Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014470.1 Corchorus olitorius cultivar O-4 contig14503, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2065
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36


Found at i:1409 original size:15 final size:15

Alignment explanation


    Indices: 1389--1426  Score: 76
    Period size: 15  Copynumber: 2.5  Consensus size: 15

       1379 TTTACACAGA

                           
       1389 TTTGAGCAAAGCAAT
          1 TTTGAGCAAAGCAAT

                           
       1404 TTTGAGCAAAGCAAT
          1 TTTGAGCAAAGCAAT

                    
       1419 TTTGAGCA
          1 TTTGAGCA

       1427 TAGATTTGAA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   23  1.00

ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29


Consensus pattern (15 bp):   
TTTGAGCAAAGCAAT
Done.