Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014474.1 Corchorus olitorius cultivar O-4 contig14507, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57229

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13588--13632
4
10.0
5
86
13
55
80
0
0
20
0.72
13588--13632
23
2.0
23
91
4
74
80
0
0
20
0.72
19254--19287
17
2.0
17
88
0
50
55
29
14
0
1.40
19529--19582
16
3.4
16
70
10
56
35
35
9
20
1.85
19518--19617
32
3.2
32
84
2
121
38
32
10
20
1.85
19516--19613
31
3.1
31
86
1
115
38
31
9
20
1.84
21726--21779
19
2.6
21
77
19
60
38
18
3
38
1.69
22750--22843
45
2.2
43
92
7
156
37
22
6
34
1.80
25056--25100
24
1.9
24
86
4
65
31
17
11
40
1.85
27041--27167
61
2.1
62
81
1
148
37
7
14
40
1.75
27657--27698
17
2.4
18
84
11
61
66
14
0
19
1.25
27709--27864
52
3.0
52
86
0
231
26
17
14
40
1.89
29703--29749
2
26.0
2
80
20
59
51
0
0
48
1.00
29702--29750
17
2.8
17
81
6
62
51
0
0
48
1.00
31569--31637
30
2.3
30
85
5
86
39
13
17
30
1.87
32131--32201
29
2.4
29
85
4
97
32
25
16
25
1.96
40886--40972
45
1.9
45
92
0
147
35
4
21
37
1.74
47790--48274
152
3.2
153
91
1
771
29
18
33
18
1.95
50970--51030
19
3.0
20
84
11
72
32
19
11
36
1.88
53663--53693
16
1.9
16
93
0
53
32
16
0
51
1.44
54015--54069
20
2.8
20
74
0
56
36
12
1
49
1.52
54173--54233
23
2.8
22
85
7
79
27
14
6
50
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54173--54243
21
3.3
21
82
7
79
28
14
7
50
1.68
54339--54415
39
2.0
39
82
5
93
40
10
6
42
1.65
54527--54695
86
2.0
86
98
0
329
33
12
5
47
1.65
54731--54800
20
3.3
21
75
16
65
31
7
14
47
1.71
54776--54826
23
2.2
23
79
6
59
27
9
13
49
1.74
55146--55185
20
2.0
21
90
5
64
25
7
10
57
1.57

Tables:   1

The End!