genome.fa.s14475.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014475.1 Corchorus olitorius cultivar O-4 contig14508, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  146310

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1819--1882	32	2.0	33	93	3	112	37	7	17	37	1.79
5550--5602	4	13.2	4	92	7	90	0	22	0	77	0.77
8397--8635	80	3.0	80	96	0	444	25	20	20	34	1.96
18288--18344	21	2.6	22	88	2	80	45	10	8	35	1.70
18264--18434	22	7.8	22	76	3	132	37	10	15	36	1.82
18513--18623	22	5.1	22	78	8	102	33	8	18	39	1.81
18527--18652	22	5.8	22	74	13	100	37	9	17	35	1.82
18854--18958	22	4.8	22	70	6	61	37	5	14	42	1.69
18961--18990	2	15.5	2	93	6	53	50	0	0	50	1.00
20151--20177	10	2.7	10	100	0	54	55	7	7	29	1.55
20534--20573	21	2.0	20	85	9	55	52	5	2	40	1.37
20621--20649	12	2.5	12	94	5	51	17	6	0	75	1.01
24699--24732	17	1.9	17	88	5	50	73	0	17	8	1.08
27548--27582	2	17.5	2	93	0	61	48	0	0	51	1.00
36590--36654	34	1.9	34	93	0	112	50	13	3	32	1.57
38286--38480	63	3.1	62	86	2	284	46	17	8	28	1.77
38939--38989	18	2.8	18	90	0	84	33	27	19	19	1.96
46462--46508	23	2.0	24	88	12	71	4	21	10	63	1.43
53321--53385	31	2.2	30	83	8	80	32	1	9	56	1.40
56616--56676	27	2.3	27	82	0	68	34	13	22	29	1.92
60275--60315	21	2.0	21	85	0	55	60	29	2	7	1.36
63043--63073	16	1.9	16	100	0	62	32	6	12	48	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63714--63762	24	2.0	25	84	11	66	22	18	4	55	1.60
64799--64845	22	2.1	22	88	7	69	44	8	19	27	1.79
65486--65767	140	2.0	140	90	4	444	35	11	9	43	1.74
66583--66607	7	3.6	7	100	0	50	44	0	0	56	0.99
69811--69844	17	1.9	18	88	5	52	50	2	2	44	1.32
70529--70589	19	3.0	20	88	6	97	34	19	9	36	1.85
79928--79967	15	2.6	16	88	4	55	62	12	10	15	1.54
84340--85343	436	2.3	437	83	3	1200	30	13	13	43	1.82
93379--93473	45	2.2	44	83	9	115	40	21	5	33	1.75
96975--97084	27	4.1	27	85	0	139	23	30	27	19	1.98
97016--97152	68	2.0	68	85	2	186	21	30	28	19	1.97
97084--97213	27	4.7	27	77	5	109	23	29	25	21	1.99
97084--97212	56	2.4	54	80	7	145	24	29	25	20	1.99
97594--97727	42	3.2	42	83	0	169	25	32	14	27	1.95
98756--98846	24	3.8	24	71	0	74	34	25	18	21	1.96
98749--98853	48	2.2	48	87	0	147	34	26	18	20	1.96
102596--102623	14	2.0	14	100	0	56	21	0	35	42	1.53
104736--105228	246	2.0	246	97	0	923	36	10	9	43	1.71
105272--105511	22	10.9	22	74	7	157	40	10	14	35	1.80
105274--105510	44	5.4	45	74	9	195	40	10	13	35	1.78
105345--105511	88	1.9	88	85	2	228	41	10	14	34	1.79
105274--105883	66	9.2	66	68	15	221	39	9	15	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105612--106164	22	25.4	21	70	12	253	39	9	15	35	1.80
105933--106021	45	2.0	45	84	4	117	32	10	19	38	1.85
106039--106091	21	2.5	22	90	3	81	49	1	16	32	1.57
108891--108970	39	2.1	39	97	0	151	27	23	8	40	1.84
109323--109372	25	2.0	25	100	0	100	48	12	16	24	1.79
110751--110776	2	13.0	2	100	0	52	50	0	0	50	1.00
115668--115705	2	19.0	2	100	0	76	50	0	0	50	1.00
118366--118506	49	3.0	48	83	8	164	26	17	5	49	1.69
119317--119366	15	3.3	15	82	0	64	42	10	26	22	1.84
119384--119426	15	2.9	15	78	0	50	23	30	20	25	1.99
128811--128946	68	2.0	68	98	0	263	34	14	13	36	1.86
130954--131038	25	3.1	28	75	13	77	22	20	9	48	1.78
130982--131038	25	2.3	25	84	0	78	24	19	8	47	1.77
135413--135705	149	2.0	149	89	0	451	17	31	20	30	1.96
135748--135881	71	1.9	71	95	0	241	21	29	12	35	1.91
136292--136587	149	2.0	149	91	0	484	16	30	21	31	1.96
137806--137848	2	22.5	2	90	9	72	51	0	0	48	1.00
137806--137848	15	2.8	16	89	10	72	51	0	0	48	1.00
137809--137848	17	2.4	17	91	0	71	50	0	0	50	1.00
141462--141499	11	3.5	11	85	10	51	57	2	0	39	1.12
141697--141742	17	2.7	17	96	0	83	13	28	2	56	1.48

Tables:   1

The End!