Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014479.1 Corchorus olitorius cultivar O-4 contig14512, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48414

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1185--1294
34
3.2
34
88
1
157
35
29
7
28
1.84
5970--6040
30
2.3
30
85
2
88
53
5
15
25
1.64
6421--6531
38
2.9
38
93
2
179
16
20
18
44
1.87
20922--20965
17
2.5
18
88
3
63
43
13
20
22
1.87
30404--30452
20
2.4
20
83
10
55
75
2
6
16
1.09
31222--31259
19
2.0
19
100
0
76
68
5
26
0
1.11
31555--31580
2
13.0
2
100
0
52
50
0
0
50
1.00
33740--34010
140
1.9
140
96
0
497
36
30
12
20
1.89
41771--41835
31
2.2
29
86
5
85
27
23
13
35
1.93
42558--42623
31
2.2
31
86
2
89
36
13
22
27
1.92

Tables:   1

The End!