Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001448.1 Corchorus olitorius cultivar O-4 contig01448, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 616

Length: 1028
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.40


Found at i:683 original size:17 final size:17

Alignment explanation


    Indices: 657--723  Score: 100
    Period size: 17  Copynumber: 4.0  Consensus size: 17

        647 CCATGTAATC

                             
        657 TTTG-ATCACTGGTGAT
          1 TTTGCATCACTGGTGAT

                        *    
        673 TTTGCATCACTGATGAT
          1 TTTGCATCACTGGTGAT

               *             
        690 TTTACATCACTGGTGAT
          1 TTTGCATCACTGGTGAT

                       *     
        707 TTTGCATCACTAGTGAT
          1 TTTGCATCACTGGTGAT

        724 CTAGGGGTGA


Statistics
Matches: 45,  Mismatches: 5, Indels: 1
        0.88            0.10        0.02

Matches are distributed among these distances:
  16    4  0.09
  17   41  0.91

ACGTcount: A:0.22, C:0.16, G:0.19, T:0.42


Consensus pattern (17 bp):   
TTTGCATCACTGGTGAT
Done.