Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014480.1 Corchorus olitorius cultivar O-4 contig14513, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42506

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
172--213
2
21.0
2
100
0
84
50
0
0
50
1.00
6784--6959
87
2.0
87
97
0
334
36
8
14
40
1.77
12098--12536
181
2.5
172
80
6
467
33
17
15
33
1.91
14126--14154
13
2.2
13
100
0
58
48
13
0
37
1.43
14818--14908
30
3.0
30
96
0
164
27
25
3
43
1.70
16657--16797
51
2.8
51
93
0
228
17
31
17
33
1.93
16814--16956
54
2.6
54
80
6
155
19
30
22
27
1.98
18207--18419
114
1.9
114
90
2
338
44
11
24
20
1.84
22692--22768
22
3.6
21
84
5
91
44
10
7
37
1.68
22924--22962
15
2.6
15
95
0
69
15
41
10
33
1.81
25363--25423
27
2.3
26
76
21
63
50
1
4
42
1.33
26059--26115
25
2.4
24
88
5
80
59
3
5
31
1.36
27130--27158
13
2.2
13
100
0
58
48
0
13
37
1.43
42098--42128
15
2.0
16
93
6
55
48
6
12
32
1.67

Tables:   1

The End!