Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014483.1 Corchorus olitorius cultivar O-4 contig14516, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1986
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30


Found at i:28 original size:21 final size:21

Alignment explanation


    Indices: 1--85  Score: 125
    Period size: 21  Copynumber: 4.0  Consensus size: 21

                                 
          1 AGAAGGTTCCAAGTTCATTGG
          1 AGAAGGTTCCAAGTTCATTGG

            *                    
         22 GGAAGGTTCCAAGTTCATTGG
          1 AGAAGGTTCCAAGTTCATTGG

                         *     * 
         43 AGAAGGTTCCAAGATCATTAG
          1 AGAAGGTTCCAAGTTCATTGG

                    *    *       
         64 AGAAGGTTTCAAGCTCATTGG
          1 AGAAGGTTCCAAGTTCATTGG

             
         85 A
          1 A

         86 ATTGCCTAAG


Statistics
Matches: 57,  Mismatches: 7, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  21   57  1.00

ACGTcount: A:0.31, C:0.14, G:0.28, T:0.27


Consensus pattern (21 bp):   
AGAAGGTTCCAAGTTCATTGG

Done.