Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014484.1 Corchorus olitorius cultivar O-4 contig14517, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2889
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31


Found at i:2120 original size:21 final size:21

Alignment explanation


    Indices: 2096--2250  Score: 235
    Period size: 21  Copynumber: 7.4  Consensus size: 21

       2086 CTTAGGCAAT

                         *       
       2096 TCCAATGAGCTTGAAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                    *            
       2117 TCCAATGATCTTGGAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                    *            
       2138 TCCAATGAACTTGGAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                                 
       2159 TCCAATGAGCTTGGAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                                  
       2180 TCCAATGAGCTTGGAA-CTTGC
          1 TCCAATGAGCTTGGAACCTT-C

                                  
       2201 TCCAATGAGCTTGGAA-CTTGC
          1 TCCAATGAGCTTGGAACCTT-C

                                  
       2222 TCCAATGAGCTTGGAA-CTTGC
          1 TCCAATGAGCTTGGAACCTT-C

                    
       2243 TCCAATGA
          1 TCCAATGA

       2251 ACTTCTAGCA


Statistics
Matches: 129,  Mismatches: 4, Indels: 2
        0.96            0.03        0.01

Matches are distributed among these distances:
  20    3  0.02
  21  126  0.98

ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29


Consensus pattern (21 bp):   
TCCAATGAGCTTGGAACCTTC

Done.