genome.fa.s14487.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014487.1 Corchorus olitorius cultivar O-4 contig14520, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72182

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4--28	9	2.8	9	100	0	50	0	20	0	80	0.72
3030--3457	19	21.0	19	70	23	123	52	1	18	26	1.55
3030--3115	36	2.3	37	92	4	138	52	3	18	25	1.61
3101--3329	45	5.1	45	89	6	338	53	1	18	26	1.54
3324--3453	56	2.3	56	80	9	149	53	0	18	27	1.50
3355--3457	37	2.8	37	95	1	161	51	0	20	28	1.48
3344--3452	19	5.8	19	86	3	159	53	0	20	26	1.46
3355--3498	37	3.8	38	86	8	120	52	0	20	27	1.46
3449--3610	25	6.2	27	70	22	87	50	0	19	30	1.48
3484--3629	28	5.4	29	74	21	156	47	0	19	32	1.50
3465--3644	53	3.4	53	95	1	317	50	0	19	30	1.48
3612--3663	20	2.6	20	82	17	56	57	0	13	28	1.36
3624--3664	20	2.0	21	95	4	75	58	0	12	29	1.34
3465--3685	106	2.1	105	84	9	281	49	0	19	30	1.54
3465--3714	106	2.4	105	82	10	271	50	0	19	29	1.54
3740--3812	28	2.6	29	82	6	96	49	2	27	20	1.63
3743--3813	27	2.5	28	79	4	81	49	2	25	22	1.63
11757--12313	278	2.0	279	95	1	1010	40	11	19	28	1.86
21324--21358	17	2.1	17	94	0	61	40	0	20	40	1.52
21492--21602	58	1.9	59	85	5	154	30	16	18	34	1.93
21492--21616	29	4.3	29	80	5	128	29	15	20	35	1.93
21490--21616	58	2.2	60	80	8	145	29	14	20	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24360--24388	13	2.2	13	100	0	58	51	0	0	48	1.00
26495--26539	21	2.2	20	88	8	63	66	6	20	6	1.38
26845--26899	21	2.4	22	80	20	60	16	27	7	49	1.72
30661--30812	75	2.0	75	100	0	304	47	13	5	34	1.65
33134--33318	92	2.0	92	91	2	300	50	1	15	32	1.53
37218--37258	20	2.0	20	95	0	73	19	21	14	43	1.87
39263--39288	12	2.2	12	100	0	52	42	0	19	38	1.51
39494--39740	21	12.1	21	84	2	276	28	14	23	34	1.94
39689--39739	17	3.0	17	97	0	93	23	15	29	31	1.95
39819--39852	17	2.0	17	94	0	59	32	29	14	23	1.94
39845--39885	21	2.0	21	85	0	55	43	17	9	29	1.80
39942--39978	19	2.0	19	94	5	67	40	5	10	43	1.63
42795--42942	74	2.0	74	95	0	269	29	26	10	33	1.90
47092--47174	38	2.2	38	84	4	105	34	26	8	30	1.86
55583--55735	75	2.0	75	90	5	238	28	11	12	48	1.75
60766--60804	7	5.6	7	100	0	78	28	30	12	28	1.93
61156--61187	14	2.3	14	94	0	55	28	6	18	46	1.73
64271--65164	167	5.6	162	75	9	672	26	21	24	27	1.99
63787--65031	482	2.6	481	83	2	1477	27	21	23	27	1.99
64740--65031	151	1.9	151	83	2	381	24	21	24	29	1.99
64275--65089	318	2.6	313	78	8	835	26	21	24	27	1.99
69825--69907	41	2.0	41	85	0	112	37	26	20	15	1.93

Tables:   1

The End!