Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014488.1 Corchorus olitorius cultivar O-4 contig14521, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37622

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1533--1624
42
2.2
42
84
5
116
29
17
30
22
1.97
1818--1959
27
5.3
26
72
13
108
19
26
28
24
1.99
1818--1959
54
2.6
54
92
0
221
19
26
28
24
1.99
5471--5501
15
2.1
15
94
5
55
67
6
12
12
1.40
5488--5545
21
2.8
20
79
5
64
50
6
20
22
1.72
7185--7279
37
2.6
37
96
0
172
49
10
18
21
1.77
11545--11608
6
10.7
6
81
9
53
84
0
4
10
0.76
11546--11608
32
2.0
32
87
0
90
84
0
4
11
0.77
11545--11609
7
9.6
7
85
8
64
84
0
4
10
0.75
12614--12745
67
2.0
67
88
5
196
61
2
30
6
1.32
12705--12742
6
6.2
6
85
14
51
81
0
18
0
0.69
12705--12748
20
2.3
19
88
11
63
81
0
18
0
0.68
19766--19800
11
3.2
11
91
0
61
80
17
2
0
0.84
26576--26689
56
2.0
56
96
0
210
41
1
23
33
1.65
27462--27520
26
2.3
26
100
0
118
38
16
16
27
1.91
29474--29531
29
1.9
29
82
6
71
31
12
31
25
1.92
35451--35514
30
2.1
31
88
2
94
23
15
20
40
1.90

Tables:   1

The End!