Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014489.1 Corchorus olitorius cultivar O-4 contig14522, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2013
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.35


Found at i:245 original size:14 final size:14

Alignment explanation


    Indices: 228--255  Score: 56
    Period size: 14  Copynumber: 2.0  Consensus size: 14

        218 TATTTTACAA

                          
        228 AAAGTTTTTTTAAT
          1 AAAGTTTTTTTAAT

                          
        242 AAAGTTTTTTTAAT
          1 AAAGTTTTTTTAAT

        256 TTATTATTCG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   14  1.00

ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57


Consensus pattern (14 bp):   
AAAGTTTTTTTAAT

Found at i:1759 original size:10 final size:10

Alignment explanation


    Indices: 1744--1770  Score: 54
    Period size: 10  Copynumber: 2.7  Consensus size: 10

       1734 GTAACACAAA

                      
       1744 TCACATACCT
          1 TCACATACCT

                      
       1754 TCACATACCT
          1 TCACATACCT

                   
       1764 TCACATA
          1 TCACATA

       1771 ATTCTCTTTA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   17  1.00

ACGTcount: A:0.33, C:0.37, G:0.00, T:0.30


Consensus pattern (10 bp):   
TCACATACCT
Done.