Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014500.1 Corchorus olitorius cultivar O-4 contig14533, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  129062

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19884--19917
16
2.1
17
88
5
52
44
2
5
47
1.42
21115--21154
21
1.9
21
100
0
80
32
15
32
20
1.93
21559--21656
49
2.0
49
100
0
196
42
16
10
30
1.81
22271--22543
147
1.9
147
91
0
447
22
28
17
31
1.97
33172--33203
2
16.0
2
100
0
64
50
0
50
0
1.00
47818--47843
7
3.7
7
100
0
52
0
11
0
88
0.52
50932--50974
18
2.4
18
80
0
50
16
16
18
48
1.81
78728--78769
2
21.0
2
95
0
75
52
0
0
47
1.00
79069--79100
10
3.2
10
90
0
55
21
9
25
43
1.82
95387--95416
3
9.7
3
92
7
51
0
33
0
66
0.92
101803--101828
6
4.3
6
100
0
52
34
34
0
30
1.58
107463--107493
3
10.0
3
93
6
53
0
35
0
64
0.94
109506--109548
21
2.0
22
95
4
79
32
18
30
18
1.95
118191--118255
32
2.0
32
100
0
130
27
18
32
21
1.97
121988--122042
15
3.6
15
74
13
58
20
30
25
23
1.98
125042--125101
25
2.4
25
94
2
104
63
6
5
25
1.39

Tables:   1

The End!