Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014502.1 Corchorus olitorius cultivar O-4 contig14535, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57754

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5960--5995
15
2.4
15
80
0
54
50
0
5
44
1.25
6514--6763
129
1.9
129
89
2
385
37
10
2
49
1.52
9366--9406
21
1.9
22
85
5
57
9
17
29
43
1.80
10215--10251
18
2.0
19
89
5
58
59
2
5
32
1.34
21392--21430
13
3.0
13
76
0
51
58
0
10
30
1.31
21283--21556
146
1.9
148
85
3
383
52
2
8
35
1.47
29300--29602
146
2.1
141
83
7
371
36
14
5
42
1.71
30988--31281
89
3.3
89
93
0
498
24
26
17
31
1.97
31420--31496
40
1.9
40
86
5
111
46
18
5
29
1.70
36408--36436
15
1.9
15
100
0
58
13
24
20
41
1.89
46128--46207
39
2.1
39
97
0
151
40
21
16
22
1.91
47363--47400
19
2.0
19
94
0
67
39
18
21
21
1.93
52846--52890
22
2.0
22
100
0
90
35
17
17
28
1.93
52949--53018
22
3.0
23
72
19
72
42
12
7
37
1.71

Tables:   1

The End!