genome.fa.s14506.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014506.1 Corchorus olitorius cultivar O-4 contig14539, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67350

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2710--2864	59	2.7	58	83	8	210	26	16	12	44	1.83
2714--2864	56	2.6	55	85	9	196	27	15	11	45	1.82
5163--5252	45	2.0	45	91	0	144	40	11	15	33	1.83
5460--5528	22	3.2	22	64	13	54	53	8	14	23	1.68
5431--5540	43	2.6	42	80	8	107	47	10	15	27	1.77
5482--5666	22	8.5	22	75	10	141	42	9	13	35	1.76
7216--7241	12	2.2	12	100	0	52	7	53	7	30	1.57
7342--7369	12	2.3	12	100	0	56	0	53	7	39	1.28
7330--7369	18	2.2	18	86	0	53	0	52	12	35	1.39
8873--9079	56	3.7	55	88	5	281	28	17	13	40	1.88
9311--9386	6	12.7	6	100	0	152	0	15	0	84	0.63
10112--10287	59	3.0	59	89	3	273	32	11	23	31	1.91
10637--10678	2	20.5	2	95	4	75	47	2	0	50	1.14
10661--10853	106	1.8	106	97	0	368	41	4	17	36	1.69
13793--13939	59	2.6	57	84	7	174	29	12	8	48	1.71
13793--13939	56	2.6	56	84	9	172	29	12	8	48	1.71
15761--15910	59	2.6	58	82	9	191	28	17	9	44	1.79
15761--15910	56	2.6	55	84	9	185	28	17	9	44	1.79
16366--17008	320	2.0	320	97	0	1205	29	17	9	43	1.81
18057--18200	59	2.5	56	82	8	155	27	16	9	46	1.78
20763--20919	58	2.7	60	89	5	225	28	17	12	42	1.86
29438--29495	29	2.0	29	96	0	107	34	25	6	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35180--35246	2	34.0	2	82	14	86	50	0	4	44	1.22
35181--35249	25	2.8	25	85	10	90	52	0	4	43	1.21
49235--49272	2	19.0	2	100	0	76	0	0	50	50	1.00
50819--50934	58	2.0	58	91	0	187	32	12	11	43	1.79
65453--65477	13	1.9	13	100	0	50	56	0	0	44	0.99
66424--66486	20	3.2	20	64	31	55	41	4	7	46	1.54
66541--66597	25	2.4	24	85	5	71	63	0	3	33	1.12

Tables:   1

The End!