Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014507.1 Corchorus olitorius cultivar O-4 contig14540, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55951

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4302--4333
6
5.3
6
100
0
64
84
0
15
0
0.63
4952--4996
21
2.2
20
88
4
63
44
11
11
33
1.75
5667--5717
22
2.4
22
86
3
68
49
7
11
31
1.68
6014--6057
20
2.1
21
88
12
65
50
11
6
31
1.65
6452--6616
87
1.9
87
93
3
289
49
6
10
33
1.63
6744--6797
19
2.7
21
70
18
53
48
3
9
38
1.53
6998--7069
21
3.3
21
77
7
72
50
8
15
26
1.72
7054--7105
26
1.9
28
88
7
81
59
9
13
17
1.60
9724--9756
16
2.1
16
100
0
66
57
0
12
30
1.35
10021--10059
20
2.0
20
85
10
53
35
5
5
53
1.45
13230--13257
3
9.3
3
100
0
56
0
0
32
67
0.91
15458--15723
132
2.0
132
94
0
469
28
18
11
41
1.85
15970--16073
55
1.9
55
89
0
163
24
11
18
46
1.82
31533--31557
2
12.5
2
100
0
50
0
48
0
52
1.00
34941--34974
2
17.0
2
100
0
68
0
50
0
50
1.00
39945--40077
3
44.3
3
100
0
266
33
0
0
66
0.92
55177--55267
16
5.6
16
70
11
69
6
16
43
32
1.74
55177--55249
32
2.3
32
95
0
128
6
17
41
34
1.76
55239--55291
17
3.1
16
82
17
63
1
18
52
26
1.56
55417--55463
13
3.8
12
78
13
51
55
4
0
40
1.19
55717--55788
31
2.3
31
75
17
78
61
8
4
26
1.43

Tables:   1

The End!