Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014515.1 Corchorus olitorius cultivar O-4 contig14548, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36232

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2--26
13
1.9
13
100
0
50
96
4
0
0
0.24
1--29
14
2.1
14
100
0
58
93
6
0
0
0.36
328--390
27
2.3
26
81
7
72
34
20
14
30
1.92
1181--1218
19
2.0
20
89
5
60
13
2
13
71
1.26
4363--4415
23
2.3
23
83
6
72
26
18
18
35
1.95
5750--5792
11
3.9
11
81
0
50
27
11
20
39
1.88
10910--10985
2
40.0
2
76
15
72
47
0
3
48
1.20
18588--18636
15
3.3
15
83
11
64
2
46
0
51
1.12
19849--19887
13
2.9
14
80
7
53
71
0
0
28
0.86
20657--20816
26
5.6
28
70
16
87
18
19
3
58
1.53
20929--21360
21
20.8
21
73
14
274
21
21
4
52
1.64
21034--21193
7
22.6
7
72
11
94
20
24
3
52
1.61
21034--21085
15
3.5
15
81
5
70
15
26
1
55
1.50
21005--21275
64
4.2
62
73
12
170
21
22
3
52
1.62
21091--21265
15
11.8
14
65
17
61
21
21
4
52
1.64
21070--21270
105
1.9
106
92
1
341
22
21
3
52
1.63
21041--21360
127
2.5
123
85
9
382
21
20
4
53
1.62
21301--21360
22
2.9
21
87
9
79
21
16
5
56
1.59
25446--25514
33
2.1
33
100
0
138
43
14
21
20
1.87
26498--26527
12
2.4
13
88
11
53
66
13
6
13
1.43
30740--30821
32
2.5
34
78
11
98
12
23
41
23
1.87

Tables:   1

The End!