Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014517.1 Corchorus olitorius cultivar O-4 contig14550, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 622

Length: 1037
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28


Found at i:591 original size:15 final size:14

Alignment explanation


    Indices: 537--593  Score: 62
    Period size: 14  Copynumber: 4.0  Consensus size: 14

        527 TTTAAAAGTC

                   * *    
        537 AAAAATGCTCTTCA
          1 AAAAATGGTTTTCA

                           
        551 AAAAA-GTGTTTTCA
          1 AAAAATG-GTTTTCA

            *             
        565 GAAAATGGTTTTCA
          1 AAAAATGGTTTTCA

                           
        579 AAAAATCGGTTTTCA
          1 AAAAAT-GGTTTTCA

        594 CAAGGGTTTA


Statistics
Matches: 36,  Mismatches: 4, Indels: 5
        0.80            0.09        0.11

Matches are distributed among these distances:
  13    1  0.03
  14   26  0.72
  15    9  0.25

ACGTcount: A:0.40, C:0.12, G:0.14, T:0.33


Consensus pattern (14 bp):   
AAAAATGGTTTTCA
Done.