Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014519.1 Corchorus olitorius cultivar O-4 contig14552, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54471

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1074--1314
32
7.5
31
84
6
261
30
25
18
25
1.98
1068--1304
64
3.7
63
85
4
307
31
25
18
23
1.98
5510--5549
21
1.9
21
90
10
64
75
0
5
20
0.99
6075--6151
30
2.5
31
80
2
93
25
25
15
32
1.96
7745--7784
20
2.0
21
85
5
55
37
10
7
45
1.66
13436--13505
36
1.9
36
94
0
122
34
17
10
38
1.83
13920--13946
2
13.5
2
100
0
54
51
0
0
48
1.00
14702--14788
45
2.1
40
85
14
115
49
8
16
26
1.73
24532--24590
29
2.0
30
96
3
111
18
20
16
44
1.87
45149--45273
22
6.0
20
68
26
66
36
4
15
43
1.68
45180--45214
17
2.1
17
88
0
52
31
0
17
51
1.45
45211--46318
44
25.0
43
67
16
287
37
9
17
36
1.82
45210--45561
66
5.3
64
76
10
237
38
10
16
34
1.83
45211--45584
22
16.9
21
72
12
189
38
10
16
35
1.82
45691--45806
61
1.9
59
82
3
142
32
6
21
39
1.78
45793--45890
21
4.6
21
78
6
90
40
7
15
36
1.74
45793--45910
43
2.7
44
79
7
127
38
6
15
38
1.74
45963--46016
22
2.4
22
87
3
72
46
0
22
31
1.52
45998--46292
22
13.4
23
71
14
189
37
10
15
37
1.81
45948--46180
108
2.1
108
87
4
335
39
7
16
36
1.76
46395--46445
22
2.5
20
81
12
66
41
3
9
45
1.56

Tables:   1

The End!