Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014521.1 Corchorus olitorius cultivar O-4 contig14554, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5514
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.36


Found at i:379 original size:32 final size:32

Alignment explanation


    Indices: 343--407  Score: 94
    Period size: 32  Copynumber: 2.0  Consensus size: 32

        333 TTCATTAATG

                      *                     
        343 GTGAAGATCATCAATTTTCTATCTAATTTTTT
          1 GTGAAGATCACCAATTTTCTATCTAATTTTTT

                    *               **      
        375 GTGAAGATTACCAATTTTCTATCTTTTTTTTT
          1 GTGAAGATCACCAATTTTCTATCTAATTTTTT

             
        407 G
          1 G

        408 AAAAAAAAAA


Statistics
Matches: 29,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  32   29  1.00

ACGTcount: A:0.25, C:0.12, G:0.11, T:0.52


Consensus pattern (32 bp):   
GTGAAGATCACCAATTTTCTATCTAATTTTTT
Done.