Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014522.1 Corchorus olitorius cultivar O-4 contig14555, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74166

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--171
3
57.0
3
98
0
315
64
0
0
35
0.93
1807--1852
20
2.1
20
84
15
56
13
13
2
71
1.23
4219--4262
15
2.9
14
80
12
52
59
0
0
40
0.98
4221--4286
35
1.9
34
84
9
89
56
0
3
40
1.15
4434--7084
332
8.0
329
75
10
1859
37
15
13
33
1.87
6836--7299
247
1.8
252
81
5
582
35
13
15
35
1.87
8265--8300
15
2.4
15
90
0
54
52
0
0
47
1.00
8559--8594
8
4.2
8
86
13
54
52
0
22
25
1.47
10266--10383
49
2.4
49
94
1
202
24
13
16
44
1.84
18980--19018
12
3.3
12
96
3
71
25
43
0
30
1.55
19029--19078
26
2.0
24
88
7
73
20
22
2
56
1.53
19079--19106
12
2.3
12
100
0
56
25
42
0
32
1.55
22496--22522
9
3.0
9
100
0
54
77
0
22
0
0.76
22826--22867
16
2.6
16
78
14
50
2
16
0
80
0.81
30089--30138
19
2.6
19
78
6
57
44
0
0
56
0.99
31152--31208
3
19.0
3
82
13
73
63
0
1
35
1.05
31139--31208
30
2.4
30
90
2
106
62
2
1
32
1.18
31434--31467
2
17.0
2
100
0
68
50
0
50
0
1.00
36740--36831
46
2.0
46
93
0
157
32
10
20
35
1.88
39186--39248
29
2.2
28
91
2
99
22
20
17
39
1.92
44178--44248
37
1.9
37
94
0
124
40
28
14
16
1.87
44263--44329
30
2.2
30
94
2
116
47
8
11
31
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46016--46089
36
2.1
36
84
5
96
25
27
24
22
2.00
46620--46650
15
2.1
15
100
0
62
6
25
19
48
1.72
48905--48936
16
2.1
16
88
11
50
25
0
15
59
1.36
54508--54572
22
2.9
22
73
19
62
33
27
6
32
1.82
56258--56297
13
3.2
13
89
7
64
35
15
10
40
1.80
59897--59932
18
1.9
18
88
5
54
63
8
16
11
1.49
60117--60148
13
2.5
13
95
5
57
53
18
9
18
1.71

Tables:   1

The End!