genome.fa.s14523.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014523.1 Corchorus olitorius cultivar O-4 contig14556, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63754

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
312--346	18	1.9	18	88	0	52	57	2	2	37	1.29
1302--1548	96	2.6	94	76	8	257	32	14	9	43	1.77
2644--5586	318	8.9	316	74	11	2121	35	16	14	33	1.89
7399--7539	31	4.5	31	80	7	151	31	24	24	19	1.98
10470--10548	33	2.4	33	95	0	140	22	15	30	31	1.95
10556--10614	21	2.8	22	82	7	77	11	23	44	20	1.85
10621--10736	21	5.5	21	83	0	160	8	31	40	19	1.82
10610--10737	42	3.0	42	96	0	229	7	30	40	21	1.81
14195--14280	45	1.9	45	90	0	136	17	30	24	27	1.97
14249--14382	68	2.0	69	90	1	216	19	27	29	23	1.98
16721--17904	332	3.6	325	80	7	1218	36	16	14	32	1.89
21185--21349	33	4.5	34	72	21	138	33	5	29	32	1.80
21256--21312	19	3.3	18	72	23	59	31	5	28	35	1.79
21182--21335	79	1.9	79	100	0	308	32	5	28	33	1.79
21257--21349	35	2.7	36	88	6	131	34	5	27	32	1.80
21532--21719	92	2.0	94	91	5	308	23	27	30	18	1.97
21714--21758	22	2.0	22	95	0	81	26	20	33	20	1.97
23276--23355	42	1.9	42	94	0	142	23	8	12	55	1.65
25014--25055	21	2.0	20	90	4	66	33	9	21	35	1.86
25014--25055	10	4.1	10	84	6	57	33	9	21	35	1.86
40793--40955	60	2.7	60	81	7	197	33	13	21	31	1.92
40975--41058	31	2.7	31	75	0	87	27	15	17	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41670--42006	179	1.9	178	90	1	532	23	20	16	39	1.92
42238--42332	45	2.1	45	94	0	163	35	4	22	37	1.73
43270--43327	25	2.4	24	80	11	73	24	5	15	55	1.61
60030--60068	2	20.0	2	94	5	71	48	0	0	51	1.00
61777--61811	11	3.2	11	83	0	52	2	2	14	80	0.95
62361--62387	14	1.9	14	100	0	54	37	7	3	51	1.48

Tables:   1

The End!