Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014525.1 Corchorus olitorius cultivar O-4 contig14558, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52745

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4041--4078
19
2.0
19
85
10
51
39
31
0
28
1.57
5030--5071
21
2.0
21
90
0
66
9
14
21
54
1.68
6118--6172
2
25.5
2
79
20
58
47
9
0
43
1.35
6121--6173
7
8.0
7
89
10
85
45
11
0
43
1.40
11701--11776
37
2.1
37
94
0
134
23
21
6
48
1.73
13958--14080
62
2.0
62
90
0
192
19
11
18
50
1.77
17267--17325
27
2.2
27
90
0
91
28
18
16
35
1.93
17320--17374
27
2.0
27
100
0
110
27
18
21
32
1.96
18127--18328
71
2.7
71
88
6
280
42
13
17
26
1.87
18279--18379
50
2.0
50
100
0
202
43
13
13
28
1.83
19828--19888
23
2.7
22
82
9
79
40
29
0
29
1.57
19916--19949
17
2.0
17
100
0
68
47
17
0
35
1.48
21329--21480
77
2.0
75
85
7
207
30
30
14
24
1.95
21471--21566
35
2.8
34
82
7
106
32
33
12
21
1.91
35925--35955
16
1.9
16
93
0
53
83
0
0
16
0.64
40740--40781
19
2.2
19
95
0
75
47
4
23
23
1.70
42071--42129
30
1.9
31
83
16
79
42
10
8
38
1.69
46856--46887
10
3.2
10
90
0
55
59
18
21
0
1.38

Tables:   1

The End!