genome.fa.s14526.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014526.1 Corchorus olitorius cultivar O-4 contig14559, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117133

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--98	34	3.0	34	68	23	102	13	38	35	12	1.82
103--140	18	2.3	17	86	13	53	0	7	18	73	1.06
6658--7853	616	1.9	616	99	0	2374	28	19	23	28	1.98
24423--24459	19	1.9	19	94	0	65	37	13	18	29	1.90
24931--24970	21	1.9	21	84	0	53	50	12	7	30	1.68
25922--25952	16	2.0	15	93	6	53	0	9	0	90	0.46
41399--41525	64	2.0	63	93	1	218	43	21	10	25	1.84
41483--41577	49	1.9	50	87	6	140	37	17	10	33	1.85
41737--41838	31	3.4	31	71	17	115	36	20	20	22	1.95
41708--41807	28	3.4	28	69	18	87	34	21	21	24	1.97
41678--41838	60	2.7	60	95	2	281	35	20	20	23	1.96
41877--42043	31	5.6	31	68	15	127	26	19	20	32	1.97
41878--42034	60	2.6	59	94	1	269	26	20	20	33	1.97
64675--64749	38	2.0	38	97	0	141	16	20	25	38	1.92
70238--70381	73	2.0	73	94	0	252	30	11	17	40	1.85
72280--72363	44	2.0	42	88	9	127	34	15	7	42	1.74
92093--94171	335	6.2	333	87	2	2847	32	14	16	36	1.89
92093--94171	668	3.1	669	87	2	2855	32	14	16	36	1.89
95644--95943	20	15.1	20	70	6	214	29	29	6	35	1.82
95644--95956	40	7.8	40	92	2	479	29	29	6	34	1.82
96680--96786	43	2.5	43	90	3	171	40	14	28	17	1.88
99147--99209	33	1.9	33	90	0	99	47	14	19	19	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100670--100741	35	2.1	35	94	0	126	13	19	18	48	1.81
100742--100793	25	2.1	25	100	0	104	19	44	21	15	1.87

Tables:   1

The End!