Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014529.1 Corchorus olitorius cultivar O-4 contig14562, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 20787
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1212 original size:31 final size:31

Alignment explanation


    Indices: 1176--1244  Score: 77
    Period size: 31  Copynumber: 2.2  Consensus size: 31

       1166 GCCCCTTCCG

                       *   * *         *    
       1176 TCAAGGG-TAATATGTCTTGAATTTTGGAAGT
          1 TCAAGGGATAAAATGGCCTGAA-TTTGAAAGT

                                           
       1207 TCAAGGGATAAAATGGCCTGAATTTGAAAGT
          1 TCAAGGGATAAAATGGCCTGAATTTGAAAGT

             *     
       1238 TTAAGGG
          1 TCAAGGG

       1245 GCAAAGTGTC


Statistics
Matches: 32,  Mismatches: 5, Indels: 2
        0.82            0.13        0.05

Matches are distributed among these distances:
  31   21  0.66
  32   11  0.34

ACGTcount: A:0.33, C:0.07, G:0.28, T:0.32


Consensus pattern (31 bp):   
TCAAGGGATAAAATGGCCTGAATTTGAAAGT

Found at i:6044 original size:1 final size:1

Alignment explanation


    Indices: 6040--6069  Score: 51
    Period size: 1  Copynumber: 30.0  Consensus size: 1

       6030 TTTTGGGGGG

                        *                 
       6040 AAAAAAAAAAAATAAAAAAAAAAAAAAAAA
          1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

       6070 CCAAACCAAC


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   1   27  1.00

ACGTcount: A:0.97, C:0.00, G:0.00, T:0.03


Consensus pattern (1 bp):   
A

Found at i:12703 original size:13 final size:13

Alignment explanation


    Indices: 12685--12709  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

      12675 AAGAATCTTT

                         
      12685 AAAAAAAAAAAAG
          1 AAAAAAAAAAAAG

                        
      12698 AAAAAAAAAAAA
          1 AAAAAAAAAAAA

      12710 ACTACCTGAT


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.96, C:0.00, G:0.04, T:0.00


Consensus pattern (13 bp):   
AAAAAAAAAAAAG
Done.