Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014533.1 Corchorus olitorius cultivar O-4 contig14566, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7874

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2037--2068
6
5.3
6
100
0
64
50
34
0
15
1.45
2098--2246
38
3.9
38
91
2
228
22
35
18
23
1.96
5361--5395
14
2.5
14
100
0
70
20
0
14
65
1.26
5409--5662
22
11.5
21
74
7
157
35
9
18
36
1.84
5430--6835
44
31.9
44
66
16
199
36
9
18
36
1.83
5430--5662
66
3.5
66
78
4
209
35
9
18
36
1.84
5685--6026
172
2.0
172
98
1
659
32
7
22
36
1.83
5885--5966
22
3.7
22
85
3
76
30
6
21
41
1.78
5908--6230
22
14.5
22
70
11
131
39
9
16
34
1.81
6089--6217
66
2.0
66
82
3
161
43
10
12
34
1.76
6343--6938
22
27.3
22
68
15
213
39
9
16
35
1.81
6531--6656
45
2.8
45
80
8
132
37
8
15
38
1.78
6958--6984
12
2.2
12
100
0
54
40
0
29
29
1.57
7012--7306
148
2.0
143
94
3
509
45
11
10
32
1.76

Tables:   1

The End!