Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014540.1 Corchorus olitorius cultivar O-4 contig14573, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58095

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
190--247
19
3.2
19
67
30
54
29
15
15
39
1.88
1--519
108
4.9
106
90
3
742
26
11
18
42
1.85
10--519
143
3.6
140
86
6
697
27
11
18
42
1.85
432--487
18
3.1
18
66
19
53
28
8
17
44
1.79
10--519
35
14.4
35
87
5
670
27
11
18
42
1.85
1059--1093
16
2.2
16
90
10
54
25
0
28
45
1.54
9808--10061
108
2.3
109
85
4
345
41
12
9
36
1.76
12272--12325
18
2.9
18
81
5
72
42
7
1
48
1.42
16101--16346
129
1.9
129
91
1
404
20
32
20
26
1.97
26205--26320
42
2.8
42
94
2
200
30
4
27
37
1.76
27324--27745
104
4.1
104
98
0
819
30
20
21
26
1.98
27809--27917
56
1.9
56
96
0
200
31
18
24
25
1.98
37723--37789
2
33.5
2
96
0
125
50
47
0
1
1.10
38972--39007
18
2.0
18
100
0
72
27
16
5
50
1.68
56885--57109
75
3.0
75
89
0
351
36
16
25
21
1.94
58036--58095
2
30.0
2
100
0
120
50
0
50
0
1.00

Tables:   1

The End!