Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014541.1 Corchorus olitorius cultivar O-4 contig14574, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71917

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
577--606
2
15.0
2
100
0
60
50
0
0
50
1.00
7202--7274
23
3.3
23
84
7
105
57
8
4
30
1.47
7210--7275
21
3.0
21
82
8
87
59
9
4
27
1.48
7756--7785
15
1.9
16
93
6
53
6
16
0
76
0.99
8621--9522
136
6.6
133
89
4
1261
31
13
18
37
1.89
8965--9026
30
2.0
31
84
3
81
22
9
19
48
1.78
19025--19243
107
2.0
108
91
3
350
17
15
24
42
1.88
40820--40858
18
2.1
18
85
4
51
28
15
12
43
1.83
51443--51502
32
1.9
31
89
3
93
45
10
13
31
1.76
52861--52892
16
2.0
16
93
0
55
46
0
0
53
1.00
52861--52907
19
2.5
18
86
6
58
51
0
0
48
1.00
52933--53009
35
2.3
35
88
4
122
44
16
16
22
1.87
56262--56373
58
1.9
58
85
7
156
32
13
21
33
1.92
57639--57708
36
1.9
36
91
0
113
21
10
8
60
1.55
58226--58634
205
2.0
199
91
2
665
43
8
11
36
1.70
58707--58752
24
2.0
23
91
4
74
54
4
8
32
1.51
58743--58823
39
2.0
40
88
2
119
38
3
8
49
1.51
60155--60235
42
2.0
40
85
4
108
13
13
14
58
1.65

Tables:   1

The End!