Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014544.1 Corchorus olitorius cultivar O-4 contig14577, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24493

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46--145
47
2.1
49
85
7
134
36
1
6
57
1.30
12967--13019
2
26.5
2
100
0
106
0
0
50
49
1.00
13481--13521
20
2.2
19
86
8
57
41
14
17
26
1.88
15483--15551
22
3.1
22
100
0
138
8
27
50
13
1.70
16501--16529
12
2.4
12
100
0
58
48
34
17
0
1.47
17304--17370
30
2.3
29
82
10
84
16
31
13
38
1.87
17304--17376
28
2.5
29
77
16
80
19
30
13
36
1.90
19025--19064
21
1.9
21
84
0
53
32
5
12
50
1.62
19043--19112
35
1.9
37
82
5
90
28
4
11
55
1.54
19506--19575
30
2.3
31
78
9
81
27
27
17
28
1.97
19623--19665
9
4.6
9
82
8
50
4
9
2
83
0.87
20435--20485
19
2.6
19
93
3
84
49
0
0
50
1.00
20442--20489
21
2.3
21
89
3
71
56
0
0
43
0.99
23686--23724
19
2.1
19
95
0
69
35
30
0
33
1.58
23832--23991
33
4.8
33
87
1
214
9
34
36
19
1.84
24389--24472
39
2.2
39
97
0
159
25
9
51
14
1.72
24389--24484
39
2.7
33
73
17
93
21
11
50
16
1.77

Tables:   1

The End!