Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014554.1 Corchorus olitorius cultivar O-4 contig14587, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3604

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
888--993
7
15.1
7
89
0
149
20
0
21
57
1.41
1127--1200
33
2.2
33
87
0
103
32
4
18
44
1.69
1339--1567
54
4.2
54
89
3
336
34
20
15
28
1.94
1339--1567
108
2.1
108
93
0
386
34
20
15
28
1.94
1692--2166
37
12.8
37
77
4
447
44
13
17
24
1.85
1664--2197
74
7.2
74
87
2
748
43
13
18
24
1.86
1664--2197
149
3.6
148
86
2
748
43
13
18
24
1.86
1664--2197
223
2.4
223
89
1
784
43
13
18
24
1.86
2576--2627
26
2.0
26
100
0
104
38
23
7
30
1.83
3007--3159
83
1.8
83
87
2
227
29
24
11
34
1.91
3293--3370
4
19.8
4
75
15
56
2
17
1
78
0.94
3299--3370
31
2.4
30
86
11
94
2
18
1
77
0.96
3311--3363
18
2.9
18
77
8
54
1
18
1
77
0.96

Tables:   1

The End!