Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014556.1 Corchorus olitorius cultivar O-4 contig14589, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5001
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.34


Found at i:922 original size:15 final size:15

Alignment explanation


    Indices: 881--926  Score: 51
    Period size: 15  Copynumber: 3.2  Consensus size: 15

        871 TTTGACAGTG

                  *        
        881 ATAATTGTGATAATT
          1 ATAATTATGATAATT

                   *       
        896 AT-A-TAAGATAATT
          1 ATAATTATGATAATT

                  *        
        909 ATAATTTTGATAATT
          1 ATAATTATGATAATT

               
        924 ATA
          1 ATA

        927 TATGCTGATA


Statistics
Matches: 25,  Mismatches: 4, Indels: 4
        0.76            0.12        0.12

Matches are distributed among these distances:
  13   10  0.40
  14    2  0.08
  15   13  0.52

ACGTcount: A:0.46, C:0.00, G:0.09, T:0.46


Consensus pattern (15 bp):   
ATAATTATGATAATT
Done.