Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014564.1 Corchorus olitorius cultivar O-4 contig14597, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 941

Length: 1569
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.32


Found at i:196 original size:58 final size:59

Alignment explanation


    Indices: 24--197  Score: 334
    Period size: 58  Copynumber: 3.0  Consensus size: 59

         14 TTTTTTTTTT

                                                                       
         24 TTGCTCTAACTTTTGCCTAAGCCGTCCTTTGCAGGATTTTCAACTTAGCGAGCTTT-TG
          1 TTGCTCTAACTTTTGCCTAAGCCGTCCTTTGCAGGATTTTCAACTTAGCGAGCTTTGTG

                                                                       
         82 TTGCTCTAACTTTTGCCTAAGCCGTCCTTTGCAGGATTTTCAACTTAGCGAGCTTTGTG
          1 TTGCTCTAACTTTTGCCTAAGCCGTCCTTTGCAGGATTTTCAACTTAGCGAGCTTTGTG

                                                                      
        141 -TGCTCTAACTTTTGCCTAAGCCGTCCTTTGCAGGATTTTCAACTTAGCGAGCTTTGT
          1 TTGCTCTAACTTTTGCCTAAGCCGTCCTTTGCAGGATTTTCAACTTAGCGAGCTTTGT

        198 AAGTAGTTTA


Statistics
Matches: 115,  Mismatches: 0, Indels: 2
        0.98            0.00        0.02

Matches are distributed among these distances:
  58  113  0.98
  59    2  0.02

ACGTcount: A:0.17, C:0.24, G:0.20, T:0.39


Consensus pattern (59 bp):   
TTGCTCTAACTTTTGCCTAAGCCGTCCTTTGCAGGATTTTCAACTTAGCGAGCTTTGTG
Done.