Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014565.1 Corchorus olitorius cultivar O-4 contig14598, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68569

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3081--3150
33
2.1
33
83
0
86
20
25
18
35
1.95
4169--4223
16
3.2
17
78
14
60
9
21
20
49
1.76
4629--4684
29
2.0
29
89
3
87
33
26
3
35
1.74
14719--14771
26
2.0
26
92
7
90
26
13
18
41
1.87
17980--18027
24
1.9
26
91
8
82
16
25
6
52
1.67
21890--21914
12
2.1
12
100
0
50
40
0
8
52
1.31
23704--23747
23
1.9
23
86
9
63
45
4
0
50
1.22
28658--28716
27
2.1
28
96
3
111
27
22
11
38
1.89
30151--30280
31
4.2
31
84
4
145
18
20
25
35
1.95
40142--40625
22
21.6
22
66
16
97
38
14
9
37
1.79
40508--40648
44
3.2
44
78
4
167
39
12
12
36
1.80
49342--49476
66
2.0
66
94
2
236
34
11
11
42
1.76
50387--50454
35
1.9
35
96
0
127
23
32
13
30
1.93
59173--59205
2
16.5
2
100
0
66
51
0
0
48
1.00
59307--59371
32
2.0
32
90
0
103
41
9
20
29
1.83
60644--60699
25
2.3
24
87
3
76
39
14
17
28
1.89
60654--60699
12
3.8
12
88
2
65
41
13
17
28
1.86
61787--61832
10
4.6
10
91
0
74
32
6
21
39
1.79
65489--65588
44
2.3
44
80
3
112
39
13
14
34
1.84
65535--65722
22
8.5
22
71
9
132
42
11
13
32
1.80
65992--66069
22
3.5
22
80
0
84
33
14
11
41
1.81
66940--67015
37
2.0
38
92
2
127
43
0
10
46
1.38

Tables:   1

The End!