Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014568.1 Corchorus olitorius cultivar O-4 contig14601, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1877
ACGTcount: A:0.36, C:0.17, G:0.11, T:0.36


Found at i:1836 original size:13 final size:14

Alignment explanation


    Indices: 1807--1839  Score: 50
    Period size: 14  Copynumber: 2.4  Consensus size: 14

       1797 TAAAAAGATA

                     *    
       1807 AAAAAAAACGCAGG
          1 AAAAAAAACCCAGG

                          
       1821 AAAAAAAACCCA-G
          1 AAAAAAAACCCAGG

                  
       1834 AAAAAA
          1 AAAAAA

       1840 TAGTGGGTCG


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  13    7  0.39
  14   11  0.61

ACGTcount: A:0.73, C:0.15, G:0.12, T:0.00


Consensus pattern (14 bp):   
AAAAAAAACCCAGG
Done.