Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014569.1 Corchorus olitorius cultivar O-4 contig14602, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  146328

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16223--16799
288
2.0
288
98
0
1109
37
15
15
31
1.88
19017--19419
199
2.0
197
96
0
743
37
14
17
31
1.89
22157--22193
19
1.9
19
94
0
65
40
13
29
16
1.86
23065--23093
9
3.3
9
90
9
51
89
0
0
10
0.48
29275--29346
34
2.1
34
94
0
126
31
11
5
51
1.60
33140--33244
53
2.0
53
94
0
183
45
14
7
32
1.73
38168--38231
31
2.1
31
91
5
103
17
6
15
60
1.54
41289--41357
29
2.4
29
80
4
77
34
13
11
40
1.80
41428--41461
13
2.7
13
90
4
52
91
8
0
0
0.43
43615--43946
147
2.2
150
88
6
509
50
3
11
34
1.56
44901--44970
22
3.2
20
81
16
70
14
22
10
52
1.71
50288--50342
28
2.0
28
88
0
83
34
10
23
30
1.89
50474--50512
17
2.6
14
78
21
51
48
7
10
33
1.66
64003--64028
13
2.0
13
100
0
52
61
23
7
7
1.49
69602--69698
45
2.2
45
84
1
124
37
4
20
38
1.72
74650--74685
1
36.0
1
100
0
72
0
0
0
100
0.00
85552--85585
2
17.0
2
100
0
68
0
50
0
50
1.00
90079--90131
2
27.0
2
92
3
90
52
0
47
0
1.00
92005--92071
34
2.0
34
85
5
91
25
17
14
41
1.88
93558--93614
27
2.1
27
86
0
78
17
14
43
24
1.86
93898--93939
20
2.1
20
90
0
66
54
0
7
38
1.28
95741--95856
55
2.1
56
98
1
225
20
5
16
57
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
95941--96007
32
2.0
33
91
5
109
23
31
11
32
1.91
96740--96798
24
2.5
24
97
0
109
20
37
30
11
1.89
98994--99088
33
2.9
32
80
9
102
20
34
34
10
1.87
99012--99106
33
2.9
33
80
3
111
18
35
34
10
1.86
98994--99131
66
2.1
66
80
0
150
16
34
37
11
1.85
100907--101037
49
2.7
48
85
7
158
44
6
21
28
1.76
104052--104116
6
10.8
6
100
0
130
66
0
0
33
0.92
104243--104281
2
19.5
2
94
0
69
48
0
2
48
1.15
129396--129577
91
2.0
91
97
2
348
45
23
9
21
1.81
131787--131821
18
1.9
18
88
0
52
51
5
2
40
1.40
135923--135961
18
2.1
19
90
4
62
30
2
5
61
1.31
139553--139604
27
2.0
26
88
3
77
40
0
3
55
1.18
139563--139601
20
2.0
20
94
0
69
38
0
5
56
1.22
140103--140170
30
2.3
29
84
2
82
26
8
25
39
1.85

Tables:   1

The End!