Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01014570.1 Corchorus olitorius cultivar O-4 contig14603, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 169076
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Found at i:2412 original size:334 final size:334
Alignment explanation
Indices: 1--20054 Score: 27115
Period size: 334 Copynumber: 60.1 Consensus size: 334
* * *
1 GCCCCGAGTCTCCTTGACATATCTATATTCATCAAACCAAATCTCAGCCATGTTGGATTTAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGG-
* *
66 ATTT-ATTTTACGAGCATCAGAATCATGTTTCGATTTAATCGGAATTTAATTCGAAAAGATATAG
65 ATTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAG
*
130 GAAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTT
130 GAAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTA
* * *
195 TAAGTGTTTTGGCCAAAAATAGTGGAAAAAACCTTCGAGTCAATTTTTGCAAAATTTTAGCCGAA
195 TAAGTGTTTTGGCCAAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAA
* **
260 ATCGTGTACTAACCATCACGGTTTTTTTCGCTAAAAACGCGAAATGGGGCCTC-GCGTCAGTTTT
260 ATCGTGTACTAACCATCACGG-TTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGC-TCAGTTTT
*
324 TAATGTTTTTTG
323 TAATGATTTTTG
* * *
336 GCCCCGAGTCTCCTTGACATATCTATATTCATCTAACCAAATCTAAGCCAAGTTTGATTTAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
* *
401 TTTGATTTTACGAGCATC----TCATGTTTCGATTTAATTAGAAATTAATTCGAAAAGATTTAGG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
*
462 AAAATCGATATTAGAACCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
527 AAGTGTTTTGGCCAAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAA
196 AAGTGTTTTGGCCAAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAA
*
592 TCGTGTACTAACCATCACGGTTTTTTTGGCTAAAAACGCGATATGGGGCCTCGGCTCAGTTTTTA
261 TCGTGTACTAACCATCACGG-TTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTA
657 ATGATTTTTG
325 ATGATTTTTG
* * * * *
667 GCCCCGAGTCTCCTTGACATATCTAAATTCATCTAACCAATTCTCAGCCAAGTTCGATTTAAAGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
* *
732 TTTTATTTTACGAGCATCAGAATCATGTTTCGATTTAATCGGAAATTAATTCGAAAAGATATAGG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
* * *
797 AAAATCGATATTAGAAGCATGAAAAACGCTTCAATCTTTTTGGCGTTGAATTATATATATTCTTT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
* * * *
862 AAGTGTTTTGGCCAAAAATTGTGGAAAAAACTTTCGGGTTAATTTTAGGATAATTTTAGCCGAAA
196 AAGTGTTTTGGCCAAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAA
* * *
927 TCGTGTACTAACCATCACTGTTTTTTGGCTAAAAACGCGATATGGGGTCTCGGCTCAG-TTTTAA
261 TCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTAA
*
991 TGTTTTTTG
326 TGATTTTTG
* * *
1000 GCCCCGAGTCTCCTTGACATATCTATATTCATCAAACCAAATCTCAGCCATGTTGGATTTAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGG-
* *
1065 ATTT-ATTTTACGAGCATCAGAATCATGTTTCGATTTAATCGGAATTTAATTCGAAAAGATATAG
65 ATTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAG
1129 GAAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTA
130 GAAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTA
**
1194 TAAGTGTTTTGGCCAAAAATTGTTAAAAAAACTTTCGGGGTCAATTTTTGCAAAATTTTAGCCGA
195 TAAGTGTTTTGGCCAAAAATTGTGGAAAAAACTTTC-GGGTCAATTTTTGCAAAATTTTAGCCGA
** * * *
1259 AATCGTGTACTAATTATCACGGTTTTTTGGCTAAAAACGCGATATAGGGCTTCGGCTCAGTTTTT
259 AATCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTT
1324 AATGATTTTTG
324 AATGATTTTTG
* *
1335 GCCCCGAGTCTCCTTGACATATCTATTTTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
*
1400 TTTTATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
* * *
1465 AAAACCGATATTAGAAGTGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATAAATTCTAT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
* *
1530 AAGTGTTTTGGTCAAAAATTATGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAA
196 AAGTGTTTTGGCCAAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAA
* *
1595 TCGTGTACTAACCATCACGATATTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTAA
261 TCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTAA
*
1660 TGATTTATG
326 TGATTTTTG
** ** ** * * *
1669 GCCCCGTTCAGTTTTTATTGATTTTTGGCCCTGAGAGTCCTTGACATATCTATATTCATCTAATC
1 GCCCCG---AG-ACTCCTTGACATAT----CT---A-T-ATT--C--ATCTA-A--C--CAAATC
** * * ** *
1734 AAATCTC-AGCCATGTTGGATTTAAGGATTTGATTTTACGAGCATCAGAATCATATTTCGATTTA
44 TCAGC-CAAG---T-TGGATTT-AAGGATTTGATTTTACGAGCATCAGAATCATGTTTCGATTTA
* * * *
1798 ATTA-AAATTAATTCAAAAAGATTTAGGAAAATCGATATTTGAAGCGTGAAAAACCCTTCAATCT
103 ATCAGAAATTAATTCGAAAAGATATAGGAAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCT
* * *
1862 TTTTGGCATTGAATTATATAAATTCTATAAGTGTTTTGGCCAAAAATTATGGAAAAAACTTTCGG
168 TTTTGGCGTTGAATTATATATATTCTATAAGTGTTTTGGCCAAAAATTGTGGAAAAAACTTTCGG
1927 GTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACG
233 GTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACG
*
1992 CGATATGGGGCCTCGGCTCAGTTTTTAATGATTTTTG
298 CGTTATGGGGCCTCGGCTCAGTTTTTAATGATTTTTG
* * *
2029 GCCACGAGTCTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTTGATTTAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
*
2094 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCGGAAATTAATTCGAAAAGATATAGG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
*
2159 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCATTGAATTATATATATTCTAT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
* *
2224 AAGTGTTTTGGCCAAAAATTGTGGAAAAAACTATCGGGTCAGTTTTTGCAAAATTTTAGCCGAAA
196 AAGTGTTTTGGCCAAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAA
* * * *
2289 TCGTGTACTAACCTTCACGGTTTTTTGGATGAAAACGCGTTATGGGGCCTCGGCTCTGTTTTTAA
261 TCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTAA
*
2354 TGAATTTTG
326 TGATTTTTG
* * * * *
2363 GCCCTGAGACTCTTTGACGTATCTATATTCATCTAACCAAATTTCAGCCAAGCTGGATTTAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
2428 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
* * * *
2493 AAAATCGATATTAGAAGCGTGAAAAATCCTTCAATCTTTTTCGTGTTGAATTATATAAATTCTAT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
* * * *
2558 AAGTTTTTTTGGCCGAAAATTGTGGAAAAAAACTTTCAGTTCAATTTTTGCAAAATTTTAGCCGA
196 AAG-TGTTTTGGCCAAAAATTGTGG-AAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGA
*
2623 AATCGTGTACGT---TATCACGGTTTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTT
259 AATCGTGTAC-TAACCATCACGG--TTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTT
*
2685 TTTAATGATTTTCG
321 TTTAATGATTTTTG
* * *
2699 GCCCCGAGTCTCCTTGACATATCTATATTCATCTAATCAAATCTCAGCCAAGTTGAATTTAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
* * * *
2764 TTTTATTTTACGAGCATCAAAATCATGTTTCGATTTAATCGGAAATTAATTCGGAAAGATATAGG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
* *
2829 AAAATCGATATTATAAGCGTGAAAAATCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
* * *
2894 AAGTGTTTTGGCCAAAAATTATGGAAAAAACTTTCGGGTCAATTTTTGCGAAATTTTAGGCGAAA
196 AAGTGTTTTGGCCAAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAA
* * *
2959 TCATGTACTAACCATCATGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGTTCAGTTTTTAA
261 TCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTAA
3024 TGATTTTTTG
326 TGA-TTTTTG
* * * * *
3034 GCCCCGAGAGTCCTTGAAATATCTATATTAATATAACCAAATCTCAGCCAAGTTTGATTTAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
* * * *
3099 TTTGATTTTACAAGCATC----TCATGTTTCGATTTAATTAGAAATTAATTCGAAAAGATTTCGG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
* *
3160 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAGTCTTTTTGGCATTGAATTATATATATTCTAT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
* * *
3225 AAATGTTTTGGCCAAAAATTATGGAAAAAACTTACGGGTCAATTTTTGCAAAATTTTAGCCGAAA
196 AAGTGTTTTGGCCAAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAA
* * * * *
3290 TCGTGGATTAACCATCACGGTTTTTAT-GCTAAAAACGCGTTTTAGGGCCCCGGCTCAGTTTTTA
261 TCGTGTACTAACCATCACGGTTTTT-TGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTA
*
3354 TTGATTTTTG
325 ATGATTTTTG
* * *
3364 GCCCCGAGACTCATTGACGTATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGAA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
*
3429 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCACAAATTAATTCGAAAAGATATAGG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
* * *
3494 AAAATCGATATTAGAAGCGTGAAAAATCCTTCAATCTTTTTCGCGTTGAATTATATAAATTCTAT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
* * * *
3559 AAGTGTTTTGGCCGAAAATTGTGGAAAAAACTTTCAGGTCAATTCTTGCAAAATTTTAGCCGAAT
196 AAGTGTTTTGGCCAAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAA
* *
3624 TCGTGTACTAACCAACACGGTTTTTAGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTAA
261 TCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTAA
3689 TGATTTTTG
326 TGATTTTTG
3698 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAA-GA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
3762 TTTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAG
66 -TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAG
* *
3827 GAAAAT-GATATTGGAAGCGTGAAAAATCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTA
130 GAAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTA
* * *
3891 TAAGTATTTTGG-CAAAACATTGTGGAAAAAATCTTTCGAGTCAATTTTTGCAATATTTTAGCCG
195 TAAGTGTTTTGGCCAAAA-ATTGTGGAAAAAA-CTTTCGGGTCAATTTTTGCAAAATTTTAGCCG
* * * * * *
3955 AAATCGTATAATAACCATCACAGTTTTTTGGCTAAAAACGCGTTCTGGGGCCCCGACTCAGTTTT
258 AAATCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTT
4020 TAATGATTTTTG
323 TAATGATTTTTG
** * * * * * *
4032 GCCCTAAGAGTCCTTCACATATCTATATTCATCTAATCATATCTCAGGCATGTTGGATTTAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
* *
4097 TTTGATTTTACGAGCATCGGAATCATATTTCGATTTAATCAGAAATTATATTCGAAAAGATATAG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTA-ATTCGAAAAGATATAG
* ***
4162 GAAGATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTTATGTTGAATTATATATATTCTA
130 GAAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTA
* * * * *
4227 TAAGAGTTTTGGCCAAAGATTGTGGAAAAAATCTTTCGAGTCAATTTTTGCAATATTTT--CCAA
195 TAAGTGTTTTGGCCAAAAATTGTGGAAAAAA-CTTTCGGGTCAATTTTTGCAAAATTTTAGCCGA
* * * * ** * * *
4290 AATC--GTA-T-A-CGTTACGGATTTTTGGCAAAAAACGCG-TCCGGGAACCCCCGCTCAGTTTT
259 AATCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGG-GCCTCGGCTCAGTTTT
*
4349 TAATGATTCTTG
323 TAATGATTTTTG
**
4361 GCCCCGAGACTCCTTGACATATCTATATTCATCTCTCCAAATCTCAGCCAAGTTGGATTTAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
* * *
4426 TTTTATTTTACGAGCATCAGAATCATGTTTCGATTTAATCGGAAATTAATTCGAAAACATATAGG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
* *
4491 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGGGTTGAATTATATATATTCTTT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
* *
4556 AAGTGTTTCGGCCAAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGGAAAATTTTAGCCGAAA
196 AAGTGTTTTGGCCAAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAA
*** *
4621 TCGTGTA-T-GTTATCACGGTTTTTTGGCTAAAAACGCGATATGGGGCCTCGGCTCAGTTTTTAA
261 TCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTAA
4684 TGATTTTTG
326 TGATTTTTG
* * * * * *
4693 GCCCTGAGTCTCCTTAACATATCTATATTCATCTAATCAAATCTCAGCCATGTTGGATTGAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
* * *
4758 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATTAGAAATTAATTCGAAAAGATTTAGT
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
** * *
4823 AAAATCGATATTAGAAGTTTGAAAAACCCTACAATCTTTTTGGCGTTGAATTATATAAATTCTAT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
*
4888 AAGTGTTTTGGCCAAAAATTGTGGAAAAAAACTTTCGGGTCAATTTTAGCAAAATTTTAGCCGAA
196 AAGTGTTTTGGCCAAAAATTGTGG-AAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAA
*** * *
4953 ATCGTGTA-T-GTTATCACGGTATTTTGGCTAAAAACGCGATATGGGGCCTCGGCTCAGTTTTTA
260 ATCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTA
5016 ATGATTTTTG
325 ATGATTTTTG
* * * ** * *
5026 GCCCCG-G-CTCAGTTTTTA-ATGATTTTTGGCCCTGAGAGTCCTTTTACATATCTATATTCATC
1 GCCCCGAGACTC---CTTGACAT-A----T----CT-ATA-T--TCAT-C-TAACCA-A---ATC
* * * * * * *
5088 TAATCAAAGCTCAGCCATGTTGGATTGAAGGATTTGATTTTACGAGCATCAGAATCATATTTCGA
44 TCAGCCAAG-T-TG-GAT-TT--A-A---GGATTTGATTTTACGAGCATCAGAATCATGTTTCGA
* * *
5153 TTAAATC-GTAAACTAATTCGAAAAGATATAGGAATATCGATATTAGAAGCGTGAAAAACCCTTC
99 TTTAATCAG-AAATTAATTCGAAAAGATATAGGAAAATCGATATTAGAAGCGTGAAAAACCCTTC
* *
5217 AATCTTTTTGGCGTTGAATTATATAAATTCTATAAGTGTTTTTGGCCGAAAATTGTGGAAAAAAC
163 AATCTTTTTGGCGTTGAATTATATATATTCTATAAGTG-TTTTGGCCAAAAATTGTGGAAAAAAC
* * * *
5282 TTTCGGGTGAATTTTTGCAAAAATTTTAACCGAATTCGTGTACTAACCATCAGGGTTTTTTTGGC
227 TTTCGGGTCAATTTTTGC-AAAATTTTAGCCGAAATCGTGTACTAACCATCACGG-TTTTTTGGC
* *
5347 TAAAAACGCGTTTTGGGGTCTCGGCTCAGTTTTTAATGACTTTTT-
290 TAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTAATGA-TTTTTG
* * * *
5392 GCCCCGAGAATCCTTGACATATCTGTATTCATCTAACCAAATCTCTGCCAAGTTGTATTTAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
*
5457 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTC-AACAGATATAGG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
5521 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
* * *
5586 AAGTGTTTTGGCCAAAAATTATGGAAAAAACTTTCGGGACAATTTTTCCAAAATTTTAGCCGAAA
196 AAGTGTTTTGGCCAAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAA
* *
5651 TCGTGTACTAACCATCACGATTTTTTGGCTAAAAACGCATTATGGGGCCTCGGCTCAGTTTTTAA
261 TCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTAA
5716 TGATTTTTTG
326 TGA-TTTTTG
* * * *
5726 GCCCCGAGAGTCCTTGAAATATCTATATTTATCTAACCAAATCTCAGCCAAGTTTGATTTAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
* * *
5791 TTTGATTTTACGAGCATC----TCATGTTTCGATTTAATTAGAAATTAATTTGAAAAGATTTAGG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
* * *
5852 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCATTGAATTATATAAATTCAAT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
* ** * * * *
5917 AAGTTTTTTGGCCGGAAATTGTGAAAAAAAATTTCGAGTCAATTTTTGCAAAATTTT-------T
196 AAGTGTTTTGGCCAAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAA
*
5975 TC-TG----AA--ATCGCGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTAA
261 TCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTAA
6033 TGATTTTTG
326 TGATTTTTG
** * * *
6042 GCCCCGAGGGTCCTTGACATATCTATATTCATCTAATCAAATCTCAACCATGTTGGATTTAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
* * * *
6107 TTCGATTTTACGAGCATCTGAATCA-GATTTCGATTTAATAAGAAATTAATTCGAAATGATATAG
66 TTTGATTTTACGAGCATCAGAATCATG-TTTCGATTTAATCAGAAATTAATTCGAAAAGATATAG
* * * * **
6171 GAAAATCGATATTAGAAGCTTGAGAAACCCTTCACTCTTTTTGGTGTTGAATCCTATATATTCTA
130 GAAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTA
* *
6236 TAAGTGTTTTGGCCAAAAATTGTGGAAAAATAAATAAAAATCTTTCGAGTCAATTTTTGCAATAT
195 TAAGTGTTTTGGCCAAAAATTGTGG--------A-AAAAA-CTTTCGGGTCAATTTTTGCAAAAT
* * * * * * **
6301 TTTTGCCTAAATCGTATACTAATCATCACGG-TTTTTGGCTAAAAACGCG-TCTGGGGCCCCAAC
250 TTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGC
*
6364 TCAGTTTTTAATGATTCTTG
315 TCAGTTTTTAATGATTTTTG
* * * **
6384 GCCCCGAGACTCCTTGGCATATCTATTTTTTATCTAATAAAATCTCAGCCAAGTTGGATTTAAGG
1 GCCCCGAGACTCCTTGACATATCTA-TATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGG
* * * * * *
6449 ATTT-AATTTACGAGCTTAAGATTCATGTTTCAATTTAATCAGAAATTAATTCGAAAAGATTTAG
65 ATTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAG
* * *
6513 GAAAATCAATATTAGAAGCGTGAAAAACCCTTCAATCATTTTGGCGTTAAATTATATATATTCTA
130 GAAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTA
* * * *
6578 TAAGTGTTTTGGCCAAATATTGTGGAAAAAAATTTTCGGGTCAATTTTTGCAGAATTTTAGCCTA
195 TAAGTGTTTTGGCCAAAAATTGTGG-AAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGA
* *
6643 AATCGTTTACTAACCATCACGGTTTTTTGGCTAAAAACGCGATAT-GGGCGCTCGGCTCAGTTTT
259 AATCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGC-CTCGGCTCAGTTTT
6707 TAATGATTTTTG
323 TAATGATTTTTG
* * * * * *
6719 GCACCGAGACTCCTTGACATATCTATTTTTATCTAACCAAATTTCAGCAAAGCTGGATTTAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
* * *
6784 TTAGATTTTACGAGCATCAGAATCACGTTTCGATTTAATCAAAAATTAATTCGAAAAGATATAGG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
* * *
6849 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCATTGAATTATATAAATTCAAT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
*
6914 AAGTGTTTTGGCCGAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAA
196 AAGTGTTTTGGCCAAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAA
* * * *
6979 TCGTGTACTAACCATCATAGTTTTTTTTGGCTAAAAACGTGTTATGGGGCTTCGGCTCAGTTTTT
261 TCGTGTACTAACCATCA-CG-GTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTT
* *
7044 ATTGATTGTTG
324 AATGATTTTTG
* * * * * * *
7055 GCCCCGAGGCTCCTTGACATATCTATTTTTATTTAACCAAATCTCAGCCACGTTAGATTCAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
*
7120 TTTGATTTTACGAGCATCAGAATCATGTTTCGAATTAATCAGAAATTAATTCGAAAAGATATAGG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
* * *
7185 AAAATCGATATTAGAAGCCTGAAAAACCCTTCAATCTTTTTGGTGTTGAATTATATAAATTCTAT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
* * * * *
7250 AAGTGTTTTGG-CAAAAGATTCTGGAAAAACCTTTCTGGTAAATTTCTGCAAAATTTTAGCCGAA
196 AAGTGTTTTGGCCAAAA-ATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAA
* * * *
7314 ATCGTGTACTGACCATCA-GGTTTTTTGGCTAAAAACGCGTTCTGGGGCCCCGGCTCAATTTTTA
260 ATCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTA
*
7378 ATGATTTTTT
325 ATGATTTTTG
* * *
7388 GCCCTGAGACTCCTTGACATATCTACATTCATCTAACCAAATTTCAGCCAAGTTGGATTTAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
* * * * * *
7453 TTTGATTTTATGAGCATGAAAATCATATTTTGATTTAATCATAAATTAATTCGAAAAGATATAGG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
* *
7518 AAAATCGATATTAGAATCGTGAAAAACCCTTCAATCTTTTTGGTGTTGAATTATATATATTCTAT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
* * * *
7583 AACTGTTTTGGCCAAAAATTGTGGAAAAAATCTTTCGAGTCAATTTTTGCAAAATTTAAGTCGAA
196 AAGTGTTTTGGCCAAAAATTGTGGAAAAAA-CTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAA
* * * * * * *
7648 ATCCTGTACTAACTATCAC-GATTTTTGGCTAAAAACGCGTTCTGGGGCCACGACTCAGTTTTCA
260 ATCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTA
*
7712 ATAATTTTTG
325 ATGATTTTTG
** * * * * * *
7722 AACACGAGACTCCTCGACATATCTATATTCATTTAACCAAATGTCAGCCAAATTAGATTTAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
* * * * * *
7787 TTTAATTTTACGAGCATCAGATTCATGTTTCAATTTAATCAAAAATTAATTCTG-TAACATATAG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTC-GAAAAGATATAG
* * * * * *
7851 GTAAATCGATATTAGAAGCGTGAAAGACCCTTAAATCTTTTTGGCGTCGAACTATGTATATTCTA
130 GAAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTA
* * * * * *
7916 TATGTCTTTTGGCCAAAGATAGTGAAAAAAACTTTCGGGTCAATTTTTTCAAAATTTTAGCCGAA
195 TAAGTGTTTTGGCCAAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAA
** * * * *
7981 ATCGTG------CGGT----TTTTTTTGGCTAAAAAAGCGTTTTGGGGCAC-CGGCTCAATTTTT
260 ATCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGC-CTCGGCTCAGTTTTT
*
8035 AATGATTTTTC
324 AATGATTTTTG
* * *
8046 GCCCCAAGACTCCATGACATATCTATATTCATTTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
* * *
8111 TTTGATTTTACGAGCATCAGAATCATATTTTGATTTAATCATAAATTAATTCGAAAAGATATAGG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
* *
8176 AAAATCGATATTAGAAGCGTGAAAAACCATTCAATCTTTTTGGCGTTGAATTATATATACTCTAT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
* *
8241 AAGTGTTTTGGCCAAAAATTGTGGAAAAAATCTTTCGAGTCAATTTTTGCAAAATTTAAGCCGAA
196 AAGTGTTTTGGCCAAAAATTGTGGAAAAAA-CTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAA
* * * *
8306 ATCGTG---T-A-CATCACGG-TTTTTGGCTAAAAACGCGTTCTGGGGCCACGACTCAGTTTTCA
260 ATCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTA
*
8365 ATGATTTTTA
325 ATGATTTTTG
* * *
8375 ACCCCGAGACTCCTTGACATATCTACATTCATCTAACCAAATCTCAGCCAAATTGGATTTAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
* * * * * *
8440 TTTGATTTTACGAGCATCAGATTCATGTTTCAATTTAATCAAAAATTAAATCGGAAACATATAGG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
* * * * *
8505 AAAATCGATATTAGATGCGGGAAAAACCCTTCAATCTTTTTGGCGTCGAATTATAAATATTCTTT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
* * * * * * * *
8570 AAGTGTTTTGGCAAAAAATTGAGGAAAATAGTTCCGGGTTAATTTTTGCAAAATTTTAACCGAAT
196 AAGTGTTTTGGCCAAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAA
* * * *
8635 TTGTGTACTAACCATCACGATTTTTTAGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTAT
261 TCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTAA
8700 TGATTTTTG
326 TGATTTTTG
* * * *
8709 GCCCCGAGGCTCCTTGACATATCTATTTTTATTTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
*
8774 TTTGATTTTACGAGCATCAGAATCATGTTTCGTTTTAATCAGAAATTAATTCGAAAAGATATAGG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
* * * * * * * *
8839 ATAATCGATTTTAGAAGCATGAAAAATCATTCAATTTTTTTGGTGTTGAATTATATAAATTCTAT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
* *
8904 AAGTGTTTTGGCCGAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAT
196 AAGTGTTTTGGCCAAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAA
* * * * *
8969 TCGTGTACTAACCAACCCGGTTTTTTAGCTAATAACGCGTTATGTGGCCTCGGCTCAGTTTTTAA
261 TCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTAA
*
9034 TGTTTTTTG
326 TGATTTTTG
9043 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
* * * *
9108 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAAAAATAAAATCGAAAAGATACAGG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
* * ** * * *
9173 AAAATCGATATTAGAAACGTTAAAAACCCTTCAATCTTTTTATCGTTAAATTATATAAATTCTGT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
** * *
9238 AAGTGTTTTGGCCGGAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATATTAGCCAAAA
196 AAGTGTTTTGGCCAAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAA
*
9303 TCGTGTACTAACCATCACGATTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTAA
261 TCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTAA
9368 TGATTTTTG
326 TGATTTTTG
*
9377 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTT-ATGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
9441 TTTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAG
66 -TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAG
* *
9506 GAAAAT-GATATTGGAAGCGTG-AAAATCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTA
130 GAAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTA
* * *
9569 TAAGTATTTTGG-CAAAACATTGTGGAAAAAATCTTTCGAGTCAATTTTTGCAATATTTTAGCCG
195 TAAGTGTTTTGGCCAAAA-ATTGTGGAAAAAA-CTTTCGGGTCAATTTTTGCAAAATTTTAGCCG
* * * * * *
9633 AAATCGTATAATAACCATCACAGTTTTTTGGCTAAAAACGCGTTCTGGGGCCCCGACTCAGTTTT
258 AAATCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTT
9698 TAATGATTTTTG
323 TAATGATTTTTG
** * * * * * *
9710 GCCCTAAGAGTCCTTCACATATCTATATTCATCTAATCATATCTCAGGCATGTTGGATTTAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
* *
9775 TTTGATTTTACGAGCATCGGAATCATATTTCGATTTAATCAGAAATTATATTCGAAAAGATATAG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTA-ATTCGAAAAGATATAG
* ***
9840 GAAGATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTTATGTTGAATTATATATATTCTA
130 GAAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTA
* * * * *
9905 TAAGAGTTTTGGCCAAAGATTGTGGAAAAAATCTTTCGAGTCAATTTTTGCAATATTTT--CCAA
195 TAAGTGTTTTGGCCAAAAATTGTGGAAAAAA-CTTTCGGGTCAATTTTTGCAAAATTTTAGCCGA
* * * * ** * * *
9968 AATC--GTA-T-A-CGTTACGGATTTTTGGCAAAAAACGCG-TCCGGGAACCCCCCGCTCAGTTT
259 AATCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGG--GCCTCGGCTCAGTTT
*
10027 TTAATGATTCTTG
322 TTAATGATTTTTG
** * *
10040 GCCCCGAGACTCCTTGACATATCTATATTCATCTCCCCAAATCT-ACGCCAAGTTAGATTCAAGG
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCA-GCCAAGTTGGATTTAAGG
*
10104 ATTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATTTAG
65 ATTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAG
*
10169 GAAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATAAATTCTA
130 GAAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTA
* * *
10234 TAAGTGTTTTGGCCGAAAATTGTGGAAAAAACTTTCGGGTAAATTTTTGCCAAATTTTAGCCGAA
195 TAAGTGTTTTGGCCAAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAA
* * * *
10299 TTCTTGTACAAACCACCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTA
260 ATCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTA
*
10364 ATGATTGTTG
325 ATGATTTTTG
* * * *
10374 GCGCCGAAACTCATTGACATATCTATATTCA-CATAACCATATCTCAGCCAAGTTGGATTTAAGG
1 GCCCCGAGACTCCTTGACATATCTATATTCATC-TAACCAAATCTCAGCCAAGTTGGATTTAAGG
*
10438 ATTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATTTAG
65 ATTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAG
*
10503 GAAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATAAATTCTA
130 GAAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTA
*
10568 TAAGTGTTTTGGCCGAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAA
195 TAAGTGTTTTGGCCAAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAA
* **
10633 TTTTTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTA
260 ATCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTA
*
10698 ATGATTGTTG
325 ATGATTTTTG
* * * * * * *
10708 GCGCCGAAACTCATTGACAAATCTATTTTTATCTAACCATATCTCAGCCAAGTTGGATTT-AGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
10772 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
* * * * *
10837 ATAATCGATATTAGAAGCATGAAAAATCCTTCAATCTTTTTGGTGTTGAATTATATAAATTCTAT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
* *
10902 AAGTGTTTTGGCCGAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCAAAA
196 AAGTGTTTTGGCCAAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAA
10967 TCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTAA
261 TCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTAA
*
11032 TGATTTTTTT
326 TGA-TTTTTG
11042 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
* * *
11107 TTTCATTTTACGAGCATCAGAATCATATTTCGATTTAATCAGAAATTAATTCGAAAAGATTTAGG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
11172 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
* *
11237 AAGTGTTTTGG-CAATAAATTGTGGAAAAAATCTTTCGAGTCAATTTTTGCAATATTTTAGCCGA
196 AAGTGTTTTGGCCAA-AAATTGTGGAAAAAA-CTTTCGGGTCAATTTTTGCAAAATTTTAGCCGA
* * * * * * * *
11301 AATCGTATAATAACCATCACGGTTTTTTGGCTGAAATCGCGTTCTTGGGCCCCAGCTCAGTTTTT
259 AATCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTT
11366 AATGATTTTTG
324 AATGATTTTTG
** ** * * *
11377 GCCCTTAGTGTCCATGACATATCTATATTCATCTAATCAAATCTCAGCCATGTTGGATTTAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
* * * * * * *
11442 TTTGGTTTTACGAGTATCAGAATCATTTTTCGATTTAGTCAGAAATGAATTTGAAAAGATATAAG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
* * * * *
11507 AAAATCAATATTAGAAGCGTG-AAAACCCTGCAATCTTTTTCGCATTAAATTATATAAATATTCT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATAT--ATATTCT
* * * * * *
11571 ATAAGTTTTTTGGCCGAAAATTGTGG-AAAAACTTTCAGTTGAATTTTTGCAAAATTTTAGCTGA
194 ATAAGTGTTTTGGCCAAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGA
* * ** *
11635 AATCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTCTAGTTCCCCGGCTCAGTTTTT
259 AATCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTT
11700 AATGATTTTTG
324 AATGATTTTTG
* *
11711 GCCCTGAGAGTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
*
11776 TTTGATTTTACGAACATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
11841 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
* * * * *
11906 AATTGTTTTGGCCAAAAATTGTGGAAAAAATCTTTCGAGTCAATTTGTGCAAAATTTAAGTCGAA
196 AAGTGTTTTGGCCAAAAATTGTGGAAAAAA-CTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAA
* * * * * *
11971 ATCCTGTACT----ATCACGG-TTTTTGGCTAAAAACGCGTTCTGGGGCCACGACTTAGTTTTCA
260 ATCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTA
12031 ATGATTTTTG
325 ATGATTTTTG
** * * * * * *
12041 AACACGAGACTCCTCGACATATCTATATTCATTTAACCAAATGTCAGCCAAATTAGATTTAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
* * * * ** *
12106 TTTAATTTTACGAGCATCAGATTCATGTTTCAATTTAATCAAAAATTAATTCGGTAACATATAGG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
* * * *
12171 TAAATCGATATTAGAAGCGTGAAAGACCCTTAAATCTTTTTGGCGTCGAATTATATATATTCTAT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
* * * * * * *
12236 ATGTCTTTTGGCCAAAGATAGTGGAAAAAATTTTC-GGTCAATTTTTTC---A----AGTCG---
196 AAGTGTTTTGGCCAAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAA
*
12290 TGCG-G---T-----T-----TTTTTTGGCTAAAAACGCGTTAT-GGGTCTCGGCTCAGTTTTTA
261 T-CGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTA
*
12340 ATGATTTTTC
325 ATGATTTTTG
* * *
12350 ACCCCAAGACTCCATGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
* *
12415 TTTGATTTTACGAGCATCAGAATCATGTGTCGATTTAATCAGAAATTAATTCTAAAAGATATAGG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
* * *
12480 AAAATCGATATTAGAAGTGTGAAAAACCCTTCAATCTTTTTTGCATTGAATTATATATATTCTAT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
* *
12545 AAGTGTTTTGGCCAAATATTGTGGAAAAAAACTTTCGAGTCAATTTTTGCAAAATTTTAGCCGAA
196 AAGTGTTTTGGCCAAAAATTGTGG-AAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAA
* *
12610 ATCGTGTACTACCCATTACGGTTTTTTGGCTAAAAACGCGTTAT-GGGCACTCGGCTCAGTTTTT
260 ATCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGC-CTCGGCTCAGTTTTT
12674 AATGATTTTTG
324 AATGATTTTTG
* * * *
12685 GCACCGAGACTCCTTGACATATCAATATTCATCTAACCAAATTTCAGCAAAGTTGGATTTAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
* * * *
12750 TTTGATTTTACGAGCATCAGAATCAGGTTTCGATTTAATCAGATATTAATTCAAAAAGATATAAG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
* ** * *
12815 AAAATTGATATTAGAAAAGTGAAAAACCCTTCAATCTTTATGGCGTTGAATTATATATATTCTTT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
* * * *
12880 AAGTGTTTTGGCCAAAGATTGTGGAAAATACTTTCGGGTCAATTTTAGCAAAGTTTTAGCCGAAA
196 AAGTGTTTTGGCCAAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAA
* * ** * * *
12945 TCGTGTACTAACCGTCACTGTTTTTTGGAAAAAAACGAGATATGAGGCCTCGGCTCA-TTTTTAA
261 TCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTAA
**
13009 TTTTTTTTG
326 TGATTTTTG
* * * *
13018 GCCCCGAGACTCCTTGACATATCTATGTTCATCTATCAAAATCTCAGCCAAGTTAGATTTAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
13083 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
* *
13148 AAAATCGATATTAGAAGTGTGAAAAACCCTTCAATCTTTTTTGCGTTGAATTATATATATTCTAT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
* *
13213 AAGTGTTTTGTCCAAATATTGTGGAAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAA
196 AAGTGTTTTGGCCAAAAATTGTGG-AAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAA
13278 ATCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTAT-GGGCACTCGGCTCAGTTTTT
260 ATCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGC-CTCGGCTCAGTTTTT
13342 AATGATTTTTG
324 AATGATTTTTG
* * *
13353 GCACCGAGACTCCTTGACATATCAATATTCATCTAACCAAATTTCAG-CATAGTTGGATTTAAGG
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCA-AGTTGGATTTAAGG
*
13417 ATTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAATATATAG
65 ATTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAG
* * ** * *
13482 AAAAATTGATATTAGAAAAGTGAAAAACCCTTCAATCTTTTTGGCATTGAATTATATATATTCTT
130 GAAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTA
* * * *
13547 TAAGTGTTTTGGCCAAAGATTGTGGAAAATACTTTCGGGTCAGTTTTTGCAAAGTTTTAGCCGAA
195 TAAGTGTTTTGGCCAAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAA
* * *
13612 ATCGTGTACTAACCGTCACGGTTTTTTGG-AAAAAACGCGATATGAGGG-CTCGGCTCAGTTTTT
260 ATCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATG-GGGCCTCGGCTCAGTTTTT
13675 AATGATTTTTG
324 AATGATTTTTG
* * * * **
13686 CCCCCGAGACTCCTTGACATATCTATATTCATCTATCCGAATCTGAGCCAAGTTATATTTAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
* *
13751 TTTGATTTTACAAGCATCAGAATCATGTTTCGATTTAATCAGTAATTAATTCGAAAAGATATAGG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
* * *
13816 AAAATCGATATTAAAAGCGTGAGAAACCCTTCAATCTTTTTGGCATTGAATTATATATATTCTAT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
* * * *
13881 AAGTTTTTTGGCCAAAAAATGTGGAAAAAATCTTTC-GATCAATTTTTGCAATATTTTAGCCGAA
196 AAGTGTTTTGGCCAAAAATTGTGGAAAAAA-CTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAA
* * * *
13945 ATCGTATACTAACCATCA---TTTTTTGGCTAAAAACGCGTCA-GGGGCCCCGGCTTAGTTTTTA
260 ATCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTA
14006 ATGATTTTT-
325 ATGATTTTTG
* *
14015 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGATTTAAGAA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
* * * * * *
14080 TTTGATTTTACGAGCATCAGATTCATGTTTCAATTTAATCAAAAATTAATTCGGAAACATATATG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
* * * *
14145 AAAATCGATATTAGATGCGTGAAAAACCCTTCAATCTTTTTGGCGTCGAATTATAAATATTCTTT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
* * *
14210 AAGTGTTTTGGCCAAAGACTTGTGGAAAAAAGTTCCGGGTCAATTTTTGCAAAATTTTAGCCGAA
196 AAGTGTTTTGGCCAAA-AATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAA
* * *
14275 TTCGTGTACTAACCATCACGGTTTTTTGGCTAAAAATGCGTTATGGGGCCTCGGCTAAGTTTTTA
260 ATCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTA
*
14340 ATGATTTTTTT
325 ATGA-TTTTTG
*
14351 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCATCCAAGTTGGATTTAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
*
14416 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGTAATTAATTCGAAAAGATATAGG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
* * * * * * * *
14481 AAAATCAATATTAGAAACGTTAAAAACCCTTCAATCTTTTTGTCATTAAATTATATAAATTTTAT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
** * * *
14546 AAGT-TGTTTGGCCGGAATTTGTGGAAAAAACTTTCGGGTCAATTTTTGAAAAATTTTATCCGAA
196 AAGTGT-TTTGGCCAAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAA
* * * * * *
14610 ATCGTGTACTAACCATCACGATTTTTTTTTTTTTAGCT-AAAACGCGTTCTGTGGACCCCGGCTA
260 ATCGTGTACTAACCATCACG-------GTTTTTTGGCTAAAAACGCGTTATG-GGGCCTCGGCTC
14674 AGTTTTTAATGATTTTTG
317 AGTTTTTAATGATTTTTG
*** * * *
14692 GATTCAAGACTCCTTGACATATATATATATATATATATTCATCTAACCAAATCTCAGCCTAGTTG
1 GCCCCGAGACTCCTTGAC----------ATATCTATATTCATCTAACCAAATCTCAGCCAAGTTG
* * * * *
14757 GATTTAAGGATTTGATTTTACAAGCATCTGAATCATGTTTCGATTTCATTATAAATTAATTCGAA
56 GATTTAAGGATTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAA
* * * * *
14822 AAGATATAGGAAAATCGATATTAGAAGCATGAAAAACCCTTCAATCTTTTTGGCATCGATTTATT
121 AAGATATAGGAAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATA
*
14887 TATATTCTATAAGTGTTTTGGCCAAAGATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATT
186 TATATTCTATAAGTGTTTTGGCCAAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATT
* ** *** *
14952 ATAGCCGAAATCGTGTTGTAACCATCAAAATTTTTTGGCTAAAAACGCATTATGGGGCCTCGGCT
251 TTAGCCGAAATCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCT
15017 CAGTTTTTAATGATTTTTG
316 CAGTTTTTAATGATTTTTG
**
15036 GTTCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTT-AGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
* * * * * *
15100 TTTGATTTTACGAGCTTTAGAATCATTTTTTGATATAATCATAAATTAATTCGAAAAGATATAGG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
* * *
15165 AAAATTGATATTAGAAGCGTGAAAAACCCTTCAATATTTTTGGCTTTGAATTATATATATTCTAT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
* * * * *
15230 AAGTGTTTTGGCCAAAGATTTTGGAAAAAACTTTCAGGTCAATTTTTGTAAAATTTTAGCAGAAA
196 AAGTGTTTTGGCCAAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAA
* * * ** *
15295 TCGTGTACTAACTATCACGG-TTTTTGGCTAAAAACGCGTTCTGGGGCCACAACTCAGTTTTCAA
261 TCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTAA
15359 TGATATTTT-
326 TGAT-TTTTG
* *
15368 ACCCTGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
* * * *
15433 TTTGATTTTACTAGCATCAAAATCATGTTTCGATTTAATCAGAATTTAAATCGAAAAGATATAGG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
* * * *
15498 AAAATCTATATTAGAAGCGTGAGAAACCCTTCAATC-TCTTGGCGTTGAATTATATATATTCTGT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
* * * *
15562 AAGTGTTTAGGCCATAAATTGTGGAAAAAATCTTTCGAGTCAATTTTTGCAATATTTTAGCCGAA
196 AAGTGTTTTGGCCAAAAATTGTGGAAAAAA-CTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAA
** *
15627 ATC--GTA-T-A-CATCACGGTTTTTTGGCTAAAAA-GACGTTCGGGGGCCCCGGCTCAGTTTTT
260 ATCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACG-CGTTATGGGGCCTCGGCTCAGTTTTT
15686 AATGATTTTTG
324 AATGATTTTTG
* * * * * *
15697 GCCCCGAGACTCCTTGACATATCTCTATTAATCTATCCAAATCTCATCCAAGTTAGATTTAAGCA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
* * *
15762 TTTGATTTTACAAGCATCAGAATCATGTTTCGATTTAATCAAAAATTAATTCAAAAAGATATAGG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
*** *
15827 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGCCCAATTATATATATTCTAC
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
*
15892 AAGTGTTTTGGCCAAAGATTGTGG-AAAAACATTTCGGGTCAATTTTTGCAAAATTTTAGCC-AA
196 AAGTGTTTTGGCCAAAAATTGTGGAAAAAAC-TTTCGGGTCAATTTTTGCAAAATTTTAGCCGAA
* * * * *
15955 ATCGTGTACTAACCATTA-GGTTTTTTGGCTAAAAACACGTTCTGGGGCCCCGGCTCAGGTTTTA
260 ATCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTA
*
16019 ATGATTTTTT
325 ATGATTTTTG
*
16029 GCCTCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
* * *
16094 TTTGATTTTACGAGCATCAGAATCATATTTTGATTTAATCATAAATTAATTCGAAAAGATATAGG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
* *
16159 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGAGTTGAATTGTATATATTCTAT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
* * * * *
16224 AAGTGTTTTGGCCAAAAATTGTTGAAAAAATCTTTCGAGTCAATTTTTGTAAAATTTAAGCTGAA
196 AAGTGTTTTGGCCAAAAATTGTGGAAAAAA-CTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAA
* * * * *
16289 ATCGTGTACTAACTATCACGG-TTTTTGGTTAAAAACGCGTTCTGGGGCCACGACTCAGTTTTTA
260 ATCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTA
16353 ATGATTTTTG
325 ATGATTTTTG
* * * * * * *
16363 ACCCCAAGACTCCTTGACATATCTATATACATTTAAACAAATCTCAGCAAAATTGGATTTAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
* * * * * ** *
16428 TTTGATTTTACAAACATCAGATTCATGTTTCAATTTAATCAAAAATTAATTCGGTAACATATAGG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
* * * * * *
16493 TAAATCGATATTAGAAGCGTGAAAGACCTTTAAATCTTTTTGGCATCGAATTATATATATTCTAT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
* * * *
16558 AAGTGTTTTGGCCAAAGATAGTGGAAAACACTTACGGGTCAATTTTTGCAAAATTTTAGCCGAAA
196 AAGTGTTTTGGCCAAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAA
* ** * ** * * *
16623 TCGTGTACTAAGCATCACTTTTTTTTTGCTAAAATGGCGTTCTGGGGCCCCGACTCAGTTTTTAA
261 TCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTAA
16688 TGATTTTTG
326 TGATTTTTG
* * * *
16697 GCCCCAAGAGTCCTTGACATATCTATAGTCATCTAACCAAATCTCAGCCAAATTGGATTTAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
**
16762 TTTGATTTTAAAAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
* *
16827 AAAATCG-TATTAGAAACGTG-AAAACCCTTCAATCCTTTTGGCGTTGAATTATATATATTCTAT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
** * * * *
16890 AAGCATTTTGGCCAAAGATTGTGTAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTGGTCGAAA
196 AAGTGTTTTGGCCAAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAA
* * * * * * *
16955 TCGTGCA-TTACCAACATGGTTTTTTGGCTAAAAACGTGTTCTGGGGCCCCGGCTCAGTTTTTAA
261 TCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTAA
*
17019 TGATTTTTT
326 TGATTTTTG
* * * *
17028 GCCCTGAGACTCCTTGACATATCCATATTTATCTAACCAAATCTCAGCCAAGTTGGATTTAAGAA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
* * * *
17093 TTTGATTCTACGAGCATCAGAATCATATTTCGA-TTAATCATAAATTAATTCGAAATGATATAGG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
17157 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGTC-TTGAATTATATATATTCTA
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGG-CGTTGAATTATATATATTCTA
* * *
17221 TAAGTGTTTTTGCCAAAGATTGTGGAAATAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAA
195 TAAGTGTTTTGGCCAAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAA
* * * * *
17286 ATC--ATA-T-ACCTATCACGG-TTTTTGGCTAAAAACGCGTTCTGGAGCCCCGGCTCAGTTTTC
260 ATCGTGTACTAACC-ATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTT
*
17346 AATGAATTTTG
324 AATGATTTTTG
* * * *
17357 GCCCCGAGACTACTTGACATATCTATATTCATCTAACCAAATCTCATCCAAATTGGATTTAGGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
*
17422 TTTGATTTGACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
*
17487 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCCTTTTGGCGTTGAATTATATATATTCTAT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
* * *
17552 AAGTGTTTTGGCCAAAGATTGTGGAAAAAAATTTCGGGTCAATTATTGCAAAATTTTAGCCGAAA
196 AAGTGTTTTGGCCAAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAA
* ** * * *
17617 TCGTGTACTAACCATCA-GGTTTTTTGGCTAAAAACGCGTTCTAAGGCCCCAGCTCAATTTTTAA
261 TCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTAA
17681 TGATTTTTG
326 TGATTTTTG
** * * * *
17690 GCCCTAAAACTCCTTGACATATCCATATTCATTTAACCAAATCTCAGCCAAGTTGGATTAAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
** * * *
17755 TTTGATTTTACGAGCATTTGAATCATATTTCGATTTAATAATAAATTAATTCGAAAAGATATAGG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
*
17820 AAAATCGAAATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
* *
17885 AAGTGTTTTGGCCAAAGATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAGTTTTAGCCGAAA
196 AAGTGTTTTGGCCAAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAA
* * *
17950 TCGTGTACTAATCATGACGGTTTTTTGGCTAAAAACGTGCTT-TGGGGCCTCGGCTCAGTTTTTA
261 TCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCG-TTATGGGGCCTCGGCTCAGTTTTTA
18014 ATGATTTTTG
325 ATGATTTTTG
* * ** *
18024 GCCCCGAGACTCCTTTACATATCTATATTCATATAACCAAATCTCATACAAATTGGATTTAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
* * * *
18089 TTTTATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGGAAACATCTAGG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
* * * *
18154 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCATTGATTTAT-TCTTTTCTAT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
* *** * * *
18218 AAGTTTTTTCTTCAAAGATTGTGGAAAAAATCTTTCGGGTTAATTTTTGTAAAATTTTAGCCGAA
196 AAGTGTTTTGGCCAAAAATTGTGGAAAAAA-CTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAA
* * * * *
18283 ATCGTGTACTAAACATCACGG-TTTTTGGCTAAAAACAC-TCTTTGGGGCCCCGGCTTAGTTTTT
260 ATCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGT-TATGGGGCCTCGGCTCAGTTTTT
*
18346 AATAATTTTTG
324 AATGATTTTTG
* * * * * *
18357 TCTCCGAGACTCATTGACATATCTATATTCATCTAACCAAATCTTAGCCCAA-TTGGCTTGAAGG
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAG-CCAAGTTGGATTTAAGG
* * *
18421 ATTTGATTTTACGGGCATCAGAATCATGTTTCGATTTAATCAAAAATTAATTCGGAAAGATATAG
65 ATTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAG
* * * * *
18486 GAAAATCGACATTAGAAGCGTGAAAAATCCTTCAATCTTTTTAGCGTTGAATTATATATACTATA
130 GAAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTA
* * ** *
18551 TAAGTGTTTTGTCCAAAGATTGTACAAAAAACTTTCGGGTCAACTTTTGCAAAATTTTAGCCGAA
195 TAAGTGTTTTGGCCAAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAA
* *
18616 ATCGTTTACT-ACCATCACGGTTTTTTGGCTAAAAACGCGTCTA--GGGCCCCGGCTCAGTTTTT
260 ATCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGT-TATGGGGCCTCGGCTCAGTTTTT
18678 AATGATTTTTG
324 AATGATTTTTG
* * * *
18689 GCCCCGAGAATCTTTGACATATCCATATTCATCTAACCAAATCTCATCCAAGTTGGATTTAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
* * *
18754 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGGAAACATATTGG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
* * * * * *
18819 AAAATCGATATTAGAAGCTTGAATAACACTTCAATCTTTTTGGCATTGATTTATACATATTCTAT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
* ** *
18884 AAGTGATTTGGCCAAGGATTGTGGAAAAAATCTTTCGGGTCAATTTTTGCAAAATTTTAGCTGAA
196 AAGTGTTTTGGCCAAAAATTGTGGAAAAAA-CTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAA
* * ** * *
18949 ATCGTATACTAACCATCACAGTTTTTT-GCTAAAAACGCGTTCCGGTGCCCCGGCTCAGTTTTTA
260 ATCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTA
*
19013 ATGATTCTTG
325 ATGATTTTTG
* *
19023 GCCCCGAGACTCCTTGATATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGATTTAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
* * * *
19088 TTTGATTTTAAGGGCATCAGAATCATGTTTCGATTTATTCAGAAATTAATTCGAAAAGCTATAGG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
* * *
19153 AAAATCGATATTCGAACCGTGAAAAACCCTTCAAACTTTTTGGCGTTGAATTATATATATTCTAT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
* * * * *
19218 AAGTGTTTTGACCAAAGATTGTGGAAAAAGCTTTCGGGTCAATTTTTACAAAATTTTTGCCGAAA
196 AAGTGTTTTGGCCAAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAA
* * *
19283 TCGTGTACTAACCATCACAG-TTTTTGGCTAAAAACGCGTT-TCGGGGGCCCCGGCTCAGTTTTC
261 TCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTAT--GGGGCCTCGGCTCAGTTTTT
19346 AATGATTTTTG
324 AATGATTTTTG
* *
19357 GCCCCAAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGATTTAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
* *
19422 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATTAGAAATTAATTCGAAAATATATAGG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
* * *
19487 AAAATCGATATTATAAGCGTGAAAAACCCTTTAATCTTTTTGGCGTTGAATTATATATGTTCTAT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
* ** * *
19552 AAGTGTTTTGGCCAAAGATTGTATAAAAAACTTCCGGGTCAATTTTTGCAAAATTTTAGCTGAAA
196 AAGTGTTTTGGCCAAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAA
* ** * * * *
19617 TCGTGTA-TGAACCATCACAG-TTTTTGGCTAAAAACGCGTTCCGGAGCCCCGGCACAGTTTTCA
261 TCGTGTACT-AACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTA
*
19680 ATGATTTTTA
325 ATGATTTTTG
* ** *
19690 GCCTCGAGACTCCTTCTCATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGATTTAAGGA
1 GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
* *
19755 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGGAAACATATAGG
66 TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
* *
19820 AAAATCTATAATAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
131 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
* ** *
19885 AAGTGTTTTGGCCAAAGATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGTTGTAA
196 AAGTGTTTTGGCCAAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAA
* * * ** * * **
19950 TCGTGTACTAACCATCACGG-GTTTTGGCTAAAACCGCGTTCTAAGG-CTCCGACTCTGTTTTGC
261 TCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCT-CGGCTCAGTTTTTA
20013 ATGATTTTTG
325 ATGATTTTTG
* * * * *
20023 GCGCCAAGACTCGTTAAAATATCTATATTCAT
1 GCCCCGAGACTCCTTGACATATCTATATTCAT
20055 TTTACCAATT
Statistics
Matches: 17461, Mismatches: 1932, Indels: 654
0.87 0.10 0.03
Matches are distributed among these distances:
309 214 0.01
310 31 0.00
311 11 0.00
314 2 0.00
315 1 0.00
316 81 0.00
317 52 0.00
318 6 0.00
319 4 0.00
320 115 0.01
321 7 0.00
323 3 0.00
324 240 0.01
325 39 0.00
326 1 0.00
327 26 0.00
328 198 0.01
329 1091 0.06
330 836 0.05
331 838 0.05
332 1160 0.07
333 3350 0.19
334 4920 0.28
335 1763 0.10
336 1155 0.07
337 70 0.00
338 20 0.00
340 1 0.00
341 31 0.00
342 218 0.01
343 65 0.00
344 60 0.00
345 14 0.00
346 4 0.00
347 13 0.00
348 4 0.00
349 3 0.00
350 1 0.00
351 237 0.01
352 13 0.00
353 3 0.00
354 2 0.00
355 3 0.00
356 19 0.00
357 5 0.00
358 1 0.00
359 1 0.00
360 225 0.01
361 45 0.00
362 149 0.01
363 39 0.00
364 1 0.00
365 10 0.00
366 52 0.00
367 6 0.00
368 2 0.00
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (334 bp):
GCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAGTTGGATTTAAGGA
TTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAGATATAGG
AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTAT
AAGTGTTTTGGCCAAAAATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAA
TCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTATGGGGCCTCGGCTCAGTTTTTAA
TGATTTTTG
Found at i:5037 original size:28 final size:28
Alignment explanation
Indices: 4997--5057 Score: 113
Period size: 28 Copynumber: 2.2 Consensus size: 28
4987 CGCGATATGG
*
4997 GGCCTCGGCTCAGTTTTTAATGATTTTT
1 GGCCCCGGCTCAGTTTTTAATGATTTTT
5025 GGCCCCGGCTCAGTTTTTAATGATTTTT
1 GGCCCCGGCTCAGTTTTTAATGATTTTT
5053 GGCCC
1 GGCCC
5058 TGAGAGTCCT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.13, C:0.23, G:0.23, T:0.41
Consensus pattern (28 bp):
GGCCCCGGCTCAGTTTTTAATGATTTTT
Found at i:26908 original size:23 final size:23
Alignment explanation
Indices: 26882--26929 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
26872 AGCATTTCAC
26882 CAAACTTTTAGGCCTGATTTGAA
1 CAAACTTTTAGGCCTGATTTGAA
26905 CAAACTTTTAGGCCTGATTTGAA
1 CAAACTTTTAGGCCTGATTTGAA
26928 CA
1 CA
26930 TTTATCCGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (23 bp):
CAAACTTTTAGGCCTGATTTGAA
Found at i:28155 original size:28 final size:30
Alignment explanation
Indices: 28123--28199 Score: 95
Period size: 28 Copynumber: 2.6 Consensus size: 30
28113 CTTCAAATTG
* *
28123 CAAGTTCAAGGGTCAAAATGTCAAAAT-TA
1 CAAGTTCAAGGGGCAAAACGTCAAAATATA
* *
28152 -AAGTTTATGGGGCAAAACGTCAAAATCATA
1 CAAGTTCAAGGGGCAAAACGTCAAAAT-ATA
28182 CAAGTTCAAGGGGCAAAA
1 CAAGTTCAAGGGGCAAAA
28200 GGTGCATTAA
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
28 22 0.56
30 2 0.05
31 15 0.38
ACGTcount: A:0.44, C:0.14, G:0.21, T:0.21
Consensus pattern (30 bp):
CAAGTTCAAGGGGCAAAACGTCAAAATATA
Found at i:32096 original size:30 final size:30
Alignment explanation
Indices: 32062--32140 Score: 140
Period size: 30 Copynumber: 2.6 Consensus size: 30
32052 CCTGAATTGC
* *
32062 AATTTTTGGACATTTTACCTCTTGAACTTT
1 AATTTTGGGACATTTTACCTCCTGAACTTT
32092 AATTTTGGGACATTTTACCTCCTGAACTTT
1 AATTTTGGGACATTTTACCTCCTGAACTTT
32122 AATTTTGGGACATTTTACC
1 AATTTTGGGACATTTTACC
32141 CCCTCAGCCT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 47 1.00
ACGTcount: A:0.24, C:0.18, G:0.13, T:0.46
Consensus pattern (30 bp):
AATTTTGGGACATTTTACCTCCTGAACTTT
Found at i:32342 original size:29 final size:30
Alignment explanation
Indices: 32270--32344 Score: 91
Period size: 29 Copynumber: 2.5 Consensus size: 30
32260 TGGGTTGAGG
* *
32270 GGGCAAAACGTCTCAAAATTGAAGTTCATGA
1 GGGCAAAACGTC-CAAAATTAAAATTCATGA
*
32301 -GGCAAAATGTCCAAAATTAAAATTCA-GA
1 GGGCAAAACGTCCAAAATTAAAATTCATGA
*
32329 GGGCAAAACATCCAAA
1 GGGCAAAACGTCCAAA
32345 CGCTACAAGT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
28 2 0.05
29 26 0.68
30 10 0.26
ACGTcount: A:0.45, C:0.17, G:0.19, T:0.19
Consensus pattern (30 bp):
GGGCAAAACGTCCAAAATTAAAATTCATGA
Found at i:34240 original size:20 final size:21
Alignment explanation
Indices: 34215--34254 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
34205 TTTGAGATAA
34215 TAATAGTGTA-AATTAATATT
1 TAATAGTGTATAATTAATATT
34235 TAATAGTGTATAATTAATAT
1 TAATAGTGTATAATTAATAT
34255 ATAGTGTATG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.45, C:0.00, G:0.10, T:0.45
Consensus pattern (21 bp):
TAATAGTGTATAATTAATATT
Found at i:34260 original size:18 final size:18
Alignment explanation
Indices: 34212--34263 Score: 63
Period size: 18 Copynumber: 2.8 Consensus size: 18
34202 TTTTTTGAGA
34212 TAATA-ATAGTGTA-AAT
1 TAATATATAGTGTATAAT
34228 TAATATTTAATAGTGTATAAT
1 TAATA--T-ATAGTGTATAAT
34249 TAATATATAGTGTAT
1 TAATATATAGTGTAT
34264 GATAAAAGTG
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
16 5 0.16
18 9 0.29
19 1 0.03
20 8 0.26
21 8 0.26
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (18 bp):
TAATATATAGTGTATAAT
Found at i:37870 original size:42 final size:45
Alignment explanation
Indices: 37823--37910 Score: 137
Period size: 46 Copynumber: 2.0 Consensus size: 45
37813 TATATGTTAT
37823 GTTAATTAAATAAAT-A-A-ATACTACTAATAAAACCAAAGAGTG
1 GTTAATTAAATAAATAATATATACTACTAATAAAACCAAAGAGTG
*
37865 GTTAATTAAATAAATAAATATATACTACTAATAAAACCAAATAGTG
1 GTTAATTAAATAAAT-AATATATACTACTAATAAAACCAAAGAGTG
37911 CGTGCCTGGT
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
42 15 0.37
44 1 0.02
45 1 0.02
46 24 0.59
ACGTcount: A:0.55, C:0.09, G:0.08, T:0.28
Consensus pattern (45 bp):
GTTAATTAAATAAATAATATATACTACTAATAAAACCAAAGAGTG
Found at i:39727 original size:22 final size:22
Alignment explanation
Indices: 39699--39753 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
39689 ATTAATAACA
*
39699 AGGTTACAAGAATTTCATAGGG
1 AGGTTACAAGAATTTCATAGAG
* *
39721 ATGTTACAAGAATTTCATATAG
1 AGGTTACAAGAATTTCATAGAG
39743 AGGTTACAAGA
1 AGGTTACAAGA
39754 TTTTTGTAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (22 bp):
AGGTTACAAGAATTTCATAGAG
Found at i:50425 original size:30 final size:30
Alignment explanation
Indices: 50385--50444 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
50375 CTCGGGTCAG
* *
50385 AATCAGTGCATGACTAGCCACACTAATGGC
1 AATCACTGCATGACTAGCCACACCAATGGC
50415 AATCACTGCATGACTAGCCACACCAATGGC
1 AATCACTGCATGACTAGCCACACCAATGGC
50445 CACCATGCAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.33, C:0.30, G:0.18, T:0.18
Consensus pattern (30 bp):
AATCACTGCATGACTAGCCACACCAATGGC
Found at i:53001 original size:33 final size:33
Alignment explanation
Indices: 52964--53055 Score: 157
Period size: 33 Copynumber: 2.8 Consensus size: 33
52954 CCATGGAAAT
52964 GGCTATGGTTCAACCCATGGTAACCAGATGAAC
1 GGCTATGGTTCAACCCATGGTAACCAGATGAAC
* * *
52997 GGCTATGGTTCAAACCATGGAAACAAGATGAAC
1 GGCTATGGTTCAACCCATGGTAACCAGATGAAC
53030 GGCTATGGTTCAACCCATGGTAACCA
1 GGCTATGGTTCAACCCATGGTAACCA
53056 TAGAAACAAT
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 53 1.00
ACGTcount: A:0.33, C:0.23, G:0.24, T:0.21
Consensus pattern (33 bp):
GGCTATGGTTCAACCCATGGTAACCAGATGAAC
Found at i:54518 original size:19 final size:20
Alignment explanation
Indices: 54494--54540 Score: 60
Period size: 22 Copynumber: 2.3 Consensus size: 20
54484 TAAAGCTGCA
54494 AAAACTG-GAAGTAGAATAG
1 AAAACTGAGAAGTAGAATAG
*
54513 AAAACTGCAATAAGTAGAATAG
1 AAAACTG--AGAAGTAGAATAG
54535 AAAACT
1 AAAACT
54541 AACCTCTAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 7 0.29
22 17 0.71
ACGTcount: A:0.55, C:0.09, G:0.19, T:0.17
Consensus pattern (20 bp):
AAAACTGAGAAGTAGAATAG
Found at i:56516 original size:86 final size:86
Alignment explanation
Indices: 56409--56580 Score: 344
Period size: 86 Copynumber: 2.0 Consensus size: 86
56399 GACCAAATGT
56409 AGTAACAAACTAAGCAAAGAGATTGGATGTATAAACAAAGCCAACTCTCTAGGCAAACATTACCA
1 AGTAACAAACTAAGCAAAGAGATTGGATGTATAAACAAAGCCAACTCTCTAGGCAAACATTACCA
56474 AGATCTCAGAGCATAAACATC
66 AGATCTCAGAGCATAAACATC
56495 AGTAACAAACTAAGCAAAGAGATTGGATGTATAAACAAAGCCAACTCTCTAGGCAAACATTACCA
1 AGTAACAAACTAAGCAAAGAGATTGGATGTATAAACAAAGCCAACTCTCTAGGCAAACATTACCA
56560 AGATCTCAGAGCATAAACATC
66 AGATCTCAGAGCATAAACATC
56581 TTTGCATTAT
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
86 86 1.00
ACGTcount: A:0.45, C:0.21, G:0.15, T:0.19
Consensus pattern (86 bp):
AGTAACAAACTAAGCAAAGAGATTGGATGTATAAACAAAGCCAACTCTCTAGGCAAACATTACCA
AGATCTCAGAGCATAAACATC
Found at i:59406 original size:85 final size:85
Alignment explanation
Indices: 59215--59522 Score: 564
Period size: 85 Copynumber: 3.6 Consensus size: 85
59205 ACAGCCAGGA
*
59215 TAATCAGACAGAACCATAAGAAGAATTTTTTTGAAATTATAAAGAACCAGATTTAGTT-CACCAA
1 TAATCAGACAGAACCATAAGAAGAATTTTCTTGAAATTATAAAGAACCAGATTTAGTTCCACCAA
59279 AATAAAATCGCAAAAATCTC
66 AATAAAATCGCAAAAATCTC
* * *
59299 TAATCAGACTGAGCTATAAGAAGAATTTTCTTGAAATTATAAAGAACCAGATTTAGTTCCACCAA
1 TAATCAGACAGAACCATAAGAAGAATTTTCTTGAAATTATAAAGAACCAGATTTAGTTCCACCAA
59364 AATAAAATCGCAAAAATCTC
66 AATAAAATCGCAAAAATCTC
59384 TAATCAGACAGAACCATAAGAAGAATTTTCTTGAAATTATAAAGAACCAGATTTAGTTCCACCAA
1 TAATCAGACAGAACCATAAGAAGAATTTTCTTGAAATTATAAAGAACCAGATTTAGTTCCACCAA
59449 AATAAAATCGCAAAAATCTC
66 AATAAAATCGCAAAAATCTC
*
59469 TAATCAGACAGAACCATAAGAAGAATTTTCTTCAAATTATAAAGAACCAGATTT
1 TAATCAGACAGAACCATAAGAAGAATTTTCTTGAAATTATAAAGAACCAGATTT
59523 CAAACTCTCA
Statistics
Matches: 215, Mismatches: 8, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
84 54 0.25
85 161 0.75
ACGTcount: A:0.46, C:0.16, G:0.11, T:0.26
Consensus pattern (85 bp):
TAATCAGACAGAACCATAAGAAGAATTTTCTTGAAATTATAAAGAACCAGATTTAGTTCCACCAA
AATAAAATCGCAAAAATCTC
Found at i:62419 original size:41 final size:42
Alignment explanation
Indices: 62362--62441 Score: 153
Period size: 41 Copynumber: 1.9 Consensus size: 42
62352 TAGACAGCAG
62362 ATGCTGCTCAATACCACCGCAACAC-AGATCCTCCCATACGT
1 ATGCTGCTCAATACCACCGCAACACAAGATCCTCCCATACGT
62403 ATGCTGCTCAATACCACCGCAACACAAGATCCTCCCATA
1 ATGCTGCTCAATACCACCGCAACACAAGATCCTCCCATA
62442 TATATATTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
41 25 0.66
42 13 0.34
ACGTcount: A:0.31, C:0.39, G:0.11, T:0.19
Consensus pattern (42 bp):
ATGCTGCTCAATACCACCGCAACACAAGATCCTCCCATACGT
Found at i:69061 original size:14 final size:14
Alignment explanation
Indices: 69042--69071 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
69032 AGATGTATAT
69042 ATCCAAACTATCAC
1 ATCCAAACTATCAC
69056 ATCCAAACTATCAC
1 ATCCAAACTATCAC
69070 AT
1 AT
69072 AAACCTTCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.33, G:0.00, T:0.23
Consensus pattern (14 bp):
ATCCAAACTATCAC
Found at i:70376 original size:291 final size:291
Alignment explanation
Indices: 69852--70434 Score: 1139
Period size: 291 Copynumber: 2.0 Consensus size: 291
69842 GGAGACCTTA
69852 ATTTTTTAAATAAAAGAAAAGAGGGAAAAGATAGTAATCTTGTGTTATGGGTAGAAATTAGAACT
1 ATTTTTTAAATAAAAGAAAAGAGGGAAAAGATAGTAATCTTGTGTTATGGGTAGAAATTAGAACT
69917 TACAACACTGCGGTTCCCAAAAATTGCCTGTCAAAGCTGCAAGGCAGGGATTAACCCAACAATCA
66 TACAACACTGCGGTTCCCAAAAATTGCCTGTCAAAGCTGCAAGGCAGGGATTAACCCAACAATCA
69982 TGTGAGAGGTGTTAAATGCAAGAACCTTAAGGTTTCAACTCCAGACAAGAAGGGAAATCTCTAAA
131 TGTGAGAGGTGTTAAATGCAAGAACCTTAAGGTTTCAACTCCAGACAAGAAGGGAAATCTCTAAA
70047 GAGGAAAGAAGAGAGAACTTGGATCCATTGTAATTTTGTCTCATTGGATGAAGGTAGAAATTGCA
196 GAGGAAAGAAGAGAGAACTTGGATCCATTGTAATTTTGTCTCATTGGATGAAGGTAGAAATTGCA
70112 ACATTGCTGTCCAAGTTAACTGTGAAAATAT
261 ACATTGCTGTCCAAGTTAACTGTGAAAATAT
*
70143 ATTTTTTAAATAAAAGAAAAGAGGGAATAGATAGTAATCTTGTGTTATGGGTAGAAATTAGAACT
1 ATTTTTTAAATAAAAGAAAAGAGGGAAAAGATAGTAATCTTGTGTTATGGGTAGAAATTAGAACT
70208 TACAACACTGCGGTTCCCAAAAATTGCCTGTCAAAGCTGCAAGGCAGGGATTAACCCAACAATCA
66 TACAACACTGCGGTTCCCAAAAATTGCCTGTCAAAGCTGCAAGGCAGGGATTAACCCAACAATCA
70273 TGTGAGAGGTGTTAAATGCAAGAACCTTAAGGTTTCAACTCCAGACAAGAAGGGAAATCTCTAAA
131 TGTGAGAGGTGTTAAATGCAAGAACCTTAAGGTTTCAACTCCAGACAAGAAGGGAAATCTCTAAA
*
70338 GAGGAAAGAAGAGAGAACTTGGATCCATTGTAATTTTGTCTCCTTGGATGAAGGTAGAAATTGCA
196 GAGGAAAGAAGAGAGAACTTGGATCCATTGTAATTTTGTCTCATTGGATGAAGGTAGAAATTGCA
*
70403 ACATTGCTGTCCAAGTTAACTGTGAAGATAT
261 ACATTGCTGTCCAAGTTAACTGTGAAAATAT
70434 A
1 A
70435 GACCTTCTTA
Statistics
Matches: 289, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
291 289 1.00
ACGTcount: A:0.38, C:0.14, G:0.22, T:0.26
Consensus pattern (291 bp):
ATTTTTTAAATAAAAGAAAAGAGGGAAAAGATAGTAATCTTGTGTTATGGGTAGAAATTAGAACT
TACAACACTGCGGTTCCCAAAAATTGCCTGTCAAAGCTGCAAGGCAGGGATTAACCCAACAATCA
TGTGAGAGGTGTTAAATGCAAGAACCTTAAGGTTTCAACTCCAGACAAGAAGGGAAATCTCTAAA
GAGGAAAGAAGAGAGAACTTGGATCCATTGTAATTTTGTCTCATTGGATGAAGGTAGAAATTGCA
ACATTGCTGTCCAAGTTAACTGTGAAAATAT
Found at i:74567 original size:651 final size:648
Alignment explanation
Indices: 73259--75620 Score: 3378
Period size: 651 Copynumber: 3.7 Consensus size: 648
73249 CGTAGTGCTG
* * *
73259 ACACCTGAAAGCCATTCTCAAATAGACCCAAACAAAAATGGAAATTTTCTAAAGTGGAAAAAGAA
1 ACACCTGAAAGCCATTTTCAAATAGACCCAAACAAGAATGGAAATTTTCTAAAGTGGAAAAGGAA
* * * * *
73324 AGAACTTAGAACCATGGTAATTTTGTCTCATGGAAAGAACTTTAAATTTGCAACATTGCTGACCA
66 AGAACTTAGAACCATAGTAATTTTGTCTCATGGAAAGAACGTAAAATTTGCAAAATTGCTGTCCA
* ** * * *
73389 CAATCCCCGTGAACTAGAAGGTAGCTCCAAAAACTAAGATGAAAACATAGACCTTTGCCAATTTG
131 CAATCCCAGTGAACTTCAAGGTAGCTGCAAAAACTAAGATGAAGACATAGACCTTCGCCAATTTG
* * * *
73454 ACTCCTTAACACAGGCGACATCTTGGATTACTTACAAAATAACAAATCACCTTGTGCTCCAAGAA
196 ACTCCTTTACACAGGCGACATCTCGGATTACCTACAAAATCACAAATCACCTTGTGCTCCAAGAA
* * *
73519 CCACCTACCAAATGAAACAAAACACAAACACAAGATCCAACTTCAATATCTCCATCAGGGAAATC
261 CAACCTACCAAACGAAACAAAACACAAACCCAAGATCCAACTTCAATATCTCCATCA-GGAAATC
* *
73584 C-AAAAGGCATAAAAAACAGTCAGATGGGATATCAAACGCAAAGAATGGAAGAGAGAGAAACGCA
325 CAAAAAGGCATAAAAAACAGTCAGATGAGATATCAAACGCAAAGAATGGAAGAGAGAAAAACGCA
* * *
73648 GGAGCAATGGCTATATTCCAAAACGAAAAACCGCTACTCCACAATGCAAACGT-AGAGCTGACAC
390 GGAGCAATGGCTATATTCCAAAACGAAAAACCGCTACTCCACCATGCAAACGTAAGTGCTAACAC
** * *
73712 CCTAGGTATGGTTTCCAGCATTGCTGTAGTCAGTGGCTGCCTGTAAAAACCATGAATACATCTAA
455 CCTAGGTATGGTTTCCAAAATT-CTGTAGTCAGT-GATGCCTGT-AAAACCATGAGT-CATCTAA
* * *
73777 ATAGGCCCGACAAAGAGGAGAGAAAAGGTGAATC-GAGACAGAAT-AACCTATAAAGAAGAGCAA
516 ATAGGCCC-A-ACA-AGGAGAGAAAAGGTGAAACAG-GACAGAATAAACCTATAAAGATGAGCAA
* * * *
73840 CACAACAAGAGCAGACTCCCACAGCACAAAATAGTGGCTCATTTCCATCAGAGTGCCAGCCAAGC
577 CACCACAAGAGCAGATTCCCACAGCACAAAATAGAGGCTCATTTCCATTAGAGTGCCAGCCAAGC
*
73905 AACCA-C
642 AACAACC
* *
73911 ACACCTGAAAGCCACTTACAAATAGACCCAAA-AAGAATGGAAATTTTCTAAAGTGGAAAAGGAA
1 ACACCTGAAAGCCATTTTCAAATAGACCCAAACAAGAATGGAAATTTTCTAAAGTGGAAAAGGAA
*
73975 AGAACTTAGAACCATAGTAATTTTGTCTCATGGAAAGAACGTAAAATTTGCAAAATTGCTTTCCA
66 AGAACTTAGAACCATAGTAATTTTGTCTCATGGAAAGAACGTAAAATTTGCAAAATTGCTGTCCA
74040 CAATCCCAGTGAACTTCAAGGTAGCTGCAAAAACTAAGATGAAGACATAGACCTTCGCCAATTTC
131 CAATCCCAGTGAACTTCAAGGTAGCTGCAAAAACTAAGATGAAGACATAGACCTTCGCCAATTT-
* * * *
74105 G-CTCCTTCACATAGGCGTCATCTCAGATTACCTACAAAATCACAAATCACCTTGTGCTCCAAGA
195 GACTCCTTTACACAGGCGACATCTCGGATTACCTACAAAATCACAAATCACCTTGTGCTCCAAGA
*
74169 ACAACCTACCAAACGAAACAAAACACAGACCCAAGATCCAACTTCAATATCTCCATCAGGAAAGT
260 ACAACCTACCAAACGAAACAAAACACAAACCCAAGATCCAACTTCAATATCTCCATCAGGAAA-T
* *
74234 CCAAAAAGGCATAAAAAAAGAGTCAGATCAGATATCAAACGCAAAGAATGGAAGAGAGAAAAACG
324 CCAAAAAGGCAT-AAAAAACAGTCAGATGAGATATCAAACGCAAAGAATGGAAGAGAGAAAAACG
* *
74299 CAGGAGCAATGGCT-TATTCCAAAATGAAAAACTGCTACTCCACCATGCAAACGTAATGTGCTAA
388 CAGGAGCAATGGCTATATTCCAAAACGAAAAACCGCTACTCCACCATGCAAACGTAA-GTGCTAA
*
74363 CACCCTAGGTCTGGTTTCCAAAATTCTGTAGTCAGTGATGCCTGTCAAAACCATGAGTCCATCTA
452 CACCCTAGGTATGGTTTCCAAAATTCTGTAGTCAGTGATGCCTGT-AAAACCATGAGT-CATCTA
*
74428 AATAGGCCCAACAAGGAGAGAAAAGGTGAAACAGGACAGAATAAACCTATAAAGATGAGCAATAC
515 AATAGGCCCAACAAGGAGAGAAAAGGTGAAACAGGACAGAATAAACCTATAAAGATGAGCAACAC
*
74493 CACAAGAGCAGATTCCCACTGCACAAAATAGAGGCTCATTTCCATTAGAGTGCCAGCCAAGCAAC
580 CACAAGAGCAGATTCCCACAGCACAAAATAGAGGCTCATTTCCATTAGAGTGCCAGCCAAGCAAC
74558 AACC
645 AACC
* * *
74562 ACACCTGACAGCCATTTTCAAATAGACCAAAACAAGAATAGAAGA-TTTCTAAAGTGGAAAAGGA
1 ACACCTGAAAGCCATTTTCAAATAGACCCAAACAAGAATGGAA-ATTTTCTAAAGTGGAAAAGGA
74626 AAGAACTTAGAACCATAGTAATTTTGTCTCATGGAAAGAACGTAAAATTTGCAAAATTGCTGTCC
65 AAGAACTTAGAACCATAGTAATTTTGTCTCATGGAAAGAACGTAAAATTTGCAAAATTGCTGTCC
* * *
74691 ACAATCCCAGTGAACTTCAAGGTAGCTGCAAAAACTAAGATGAAGACATAGACATTCGCCAAATC
130 ACAATCCCAGTGAACTTCAAGGTAGCTGCAAAAACTAAGATGAAGACATAGACCTTCGCCAATTT
* *
74756 GGCTCCTTTACACAGGCGACA--TCGGATTACCTACAAAATCACAAATCACCTTGTACTCCAAGA
195 GACTCCTTTACACAGGCGACATCTCGGATTACCTACAAAATCACAAATCACCTTGTGCTCCAAGA
* *
74819 ACAACCTATCAAACGAAACAAAACACAAA--C-----CCAACTTCAATATCTCCATCAGGGAAGT
260 ACAACCTACCAAACGAAACAAAACACAAACCCAAGATCCAACTTCAATATCTCCATCA-GGAAAT
* *
74877 CCAAAAAGGCATAAAAAACAGTCAGATGAGATATCAAACACAAAGAA-GGAAGAGAG-TAAACGC
324 CCAAAAAGGCATAAAAAACAGTCAGATGAGATATCAAACGCAAAGAATGGAAGAGAGAAAAACGC
*
74940 AGGAGCAATGGCTATATTCCAAAACGACAAACCGCTACTCCACCATGCAAACGTAA-TGCTAACA
389 AGGAGCAATGGCTATATTCCAAAACGAAAAACCGCTACTCCACCATGCAAACGTAAGTGCTAACA
*
75004 CCCTAGGTATGGTTTCCAAAATTCAGTAGTCAGTGA----TG-----CC-T--G---TC-AAA-A
454 CCCTAGGTATGGTTTCCAAAATTCTGTAGTCAGTGATGCCTGTAAAACCATGAGTCATCTAAATA
75052 ---CC-ACAAGGAGAGAAAAGGTGAAACAGGACAGAATAAACCTATAAAGATGAGCAACACCACA
519 GGCCCAACAAGGAGAGAAAAGGTGAAACAGGACAGAATAAACCTATAAAGATGAGCAACACCACA
75113 AGAGCAGATTCCCACAGCACAAAATAGAGGCTCATTTCCATTAGAGTGCCAGCCAAGCAACAACC
584 AGAGCAGATTCCCACAGCACAAAATAGAGGCTCATTTCCATTAGAGTGCCAGCCAAGCAACAACC
* * * *
75178 ACACCTGACAGCAATTTTCAAAAAGA---AAACAAGAATGAAAATTTTCTAAAGTGGAAAAGGAA
1 ACACCTGAAAGCCATTTTCAAATAGACCCAAACAAGAATGGAAATTTTCTAAAGTGGAAAAGGAA
* *
75240 AGAACTTAGAACCATAGTAATTTTGTCCCATGGAAAGAACGTAAAATTTGCAACATTG-TGTCCA
66 AGAACTTAGAACCATAGTAATTTTGTCTCATGGAAAGAACGTAAAATTTGCAAAATTGCTGTCCA
* *
75304 CAATCCCAGTTAACCTTCAAGGTAGCTGCAAAAACAAAGATGAAGACATAGACCTTCGCCAATTT
131 CAATCCCAGTGAA-CTTCAAGGTAGCTGCAAAAACTAAGATGAAGACATAGACCTTCGCCAATTT
* * * * *
75369 GAATCCTTTACACAGGCGACATCTTGGACTACTTACAAAATCACAAATCACC--GTCCCTCCAAG
195 GACTCCTTTACACAGGCGACATCTCGGATTACCTACAAAATCACAAATCACCTTGT-GCTCCAAG
* * * * *
75432 AACCATCTACCAAACAAAACAAAAAACAAATCCAAGATCCAACTTC-A-A--T-CA--AGGAAAT
259 AACAACCTACCAAACGAAACAAAACACAAACCCAAGATCCAACTTCAATATCTCCATCAGGAAAT
*
75490 CCAAAAAGGCATAAAAAACAGTCAGATGGGATATCAAACGCAAAGAATGGAAGAGAGAAAAACGC
324 CCAAAAAGGCATAAAAAACAGTCAGATGAGATATCAAACGCAAAGAATGGAAGAGAGAAAAACGC
*
75555 AGGAGCAATGGCTATATTCCAAAACGAAAAACCGCTACTCCACCATGCAAACGT-AGTGCTGACA
389 AGGAGCAATGGCTATATTCCAAAACGAAAAACCGCTACTCCACCATGCAAACGTAAGTGCTAACA
75619 CC
454 CC
75621 TGAAAGCCAT
Statistics
Matches: 1571, Mismatches: 110, Indels: 95
0.88 0.06 0.05
Matches are distributed among these distances:
612 19 0.01
613 206 0.13
614 43 0.03
615 94 0.06
616 149 0.09
617 3 0.00
619 1 0.00
620 2 0.00
621 11 0.01
622 2 0.00
626 1 0.00
628 1 0.00
629 2 0.00
635 2 0.00
639 42 0.03
640 19 0.01
641 48 0.03
642 32 0.02
643 34 0.02
644 4 0.00
648 1 0.00
649 26 0.02
650 156 0.10
651 291 0.19
652 280 0.18
653 75 0.05
654 27 0.02
ACGTcount: A:0.42, C:0.23, G:0.17, T:0.19
Consensus pattern (648 bp):
ACACCTGAAAGCCATTTTCAAATAGACCCAAACAAGAATGGAAATTTTCTAAAGTGGAAAAGGAA
AGAACTTAGAACCATAGTAATTTTGTCTCATGGAAAGAACGTAAAATTTGCAAAATTGCTGTCCA
CAATCCCAGTGAACTTCAAGGTAGCTGCAAAAACTAAGATGAAGACATAGACCTTCGCCAATTTG
ACTCCTTTACACAGGCGACATCTCGGATTACCTACAAAATCACAAATCACCTTGTGCTCCAAGAA
CAACCTACCAAACGAAACAAAACACAAACCCAAGATCCAACTTCAATATCTCCATCAGGAAATCC
AAAAAGGCATAAAAAACAGTCAGATGAGATATCAAACGCAAAGAATGGAAGAGAGAAAAACGCAG
GAGCAATGGCTATATTCCAAAACGAAAAACCGCTACTCCACCATGCAAACGTAAGTGCTAACACC
CTAGGTATGGTTTCCAAAATTCTGTAGTCAGTGATGCCTGTAAAACCATGAGTCATCTAAATAGG
CCCAACAAGGAGAGAAAAGGTGAAACAGGACAGAATAAACCTATAAAGATGAGCAACACCACAAG
AGCAGATTCCCACAGCACAAAATAGAGGCTCATTTCCATTAGAGTGCCAGCCAAGCAACAACC
Found at i:76928 original size:648 final size:650
Alignment explanation
Indices: 75950--78375 Score: 3439
Period size: 652 Copynumber: 3.8 Consensus size: 650
75940 CCATCCAACT
* *
75950 TCTCCATCAGGGAAATCC-AAAAGGCATAAAAAACAGTCAGATGGGATATCAAACGCAAAGAATG
1 TCTCCATCAGGAAAATCCAAAAAGGCATAAAAAACAGTCAGATGAGATATCAAACGCAAAGAATG
* *
76014 AAAGAGAGAGAAACGCAGGAGCAATGGCTATATTCCAAAACGTAAAACCGCTACTCCACCATGCA
66 GAAGAGAGAAAAACGCAGGAGCAATGGCTATATTCCAAAACG-AAAACCGCTACTCCACCATGCA
* * *
76079 AACGTAGA-GCTGACACCCTAGGTATGGTTTCCAACATTGCTGTAGTCAGTAACTGCCTGTAAAA
130 AACGTA-ATGCTAACACCCTAGGTATGGTTTCCAACATTGCTGTAGTCAGTGACTGCCTGTCAAA
* *
76143 ACCATGAATACATCTAAATAGGCCTGACAA-AGAGGAGAGAAAAGGTGAATC-GAGACAGAATAA
194 ACCATGAATCCATCTAAATAGGCC---CAACAGAGGAGAGAAAAGGTGAAACAG-GACAGAATAA
* * *
76206 CCTATAAAGAAGAGCAACACAACAAGAGCAGACTCCCACAGCACAAAATAGTGGCTCATTTCCAT
255 CCTATAAAGATGAGCAACACAACAAGAGCAGATTCCCACAGCACAAAATAGAGGCTCATTTCCAT
* * * *
76271 CAGAGTGCCAGCCAAGCAACCA-CACACCTGAAAGCGACTTACAAATAGACCCAAAAAAGAAGGG
320 TAGAGTGCCAGCCAAGCAACCACCACACCTGAAAGCCACTTACAAATAGACCCAAACAAGAATGG
* *
76335 AAATTTTCT-AAGTGGAAAAGGAAAGGACTTAGAACCATAGTAATTCTGTCTCATGGAAAGAACG
385 AAAATTTCTAAAGTGGAAAAGGAAAGGACTTAGAACCATAGTAATTTTGTCTCATGGAAAGAACG
*
76399 TAAAATTTGCAAAATTGCTGTCCACAATCCCAGTAAACTTCAAGGTAGCTGCAAAAACTAAGATG
450 TAAAATTTGCAAAATTGCTGTCCACAATCCCAGTGAACTTCAAGGTAGCTGCAAAAACTAAGATG
* * *
76464 AAGACATAGACCTTCGTCAATTTGGCTCCTTCACATAGGCGACATCTCGGATTACCTACAAAATC
515 AAGACATAGACCTTCGCCAATTTGGCTCCTT-ACACAGGCGACATCTTGGATTACCTACAAAATC
* * *
76529 ACAAATCACCTTGTGCTCCAAGAACAACCTACCAAACGAAACAAAACACAGACCCAAGATCGAAC
579 ACAAATCACCTTGTGCTCCAAGAACCACCTACCAAACGAAACAAAACACAAATCCAAGATCGAAC
76594 TTCAATA
644 TTCAATA
* * * *
76601 TCTCCATCAGGAAAATCCAAAAAGGCATAAAAGAAGAGTCACATCAGATATCAAAGGCAAAGAAT
1 TCTCCATCAGGAAAATCCAAAAAGGCATAAAA-AACAGTCAGATGAGATATCAAACGCAAAGAAT
* * * *
76666 GGTAGAGAGATAAACGCAGGAGCAATGGCT-TATTCCAAAATGACAAACTGCTACTCCACCATGC
65 GGAAGAGAGAAAAACGCAGGAGCAATGGCTATATTCCAAAACGA-AAACCGCTACTCCACCATGC
76730 AAACGTAATGCTAACACCCTAGGTATGGTTTCCGAA-ATT-CTGTAGTCAGTGA-TGCCTGTCAA
129 AAACGTAATGCTAACACCCTAGGTATGGTTTCC-AACATTGCTGTAGTCAGTGACTGCCTGTCAA
*
76792 AACCATGAGTCCATCTAAATAGGCCCAACA-AGGAGAGAAAAGGTGAAACAGGACAGAATAAACC
193 AACCATGAATCCATCTAAATAGGCCCAACAGAGGAGAGAAAAGGTGAAACAGGACAGAAT-AACC
* *
76856 TATAAAGATGAGCAACACCACAAGAGCAGATTCCCACTGCACAAAATAGAGGCTCATTTCCATTA
257 TATAAAGATGAGCAACACAACAAGAGCAGATTCCCACAGCACAAAATAGAGGCTCATTTCCATTA
* * * *
76921 GAGTGCCAGCCAAGCAA-CATCCACACCTGACAGCCATTTTCAAATAGACCCAAACAAGAATAGA
322 GAGTGCCAGCCAAGCAACCA-CCACACCTGAAAGCCACTTACAAATAGACCCAAACAAGAATGGA
* * *
76985 AGATTTCTGAAGTGGAAAAGGAAAGGAACTTAGAACCATAGTAATTTTGTCTCATGGAAAGAACA
386 AAATTTCTAAAGTGGAAAAGGAAAGG-ACTTAGAACCATAGTAATTTTGTCTCATGGAAAGAACG
* * *
77050 TAAAATTTGCAACATTGCTGTCCACAATCCGAGTGAA---CAAGGTAGCTGCAAAAACAAAGATG
450 TAAAATTTGCAAAATTGCTGTCCACAATCCCAGTGAACTTCAAGGTAGCTGCAAAAACTAAGATG
* * *
77112 AAGACATAGACCTTCGCCAATTCGGCTCCTTTAAACAGGCGAAGCATCTTGGATTACTTACAAAA
515 AAGACATAGACCTTCGCCAATTTGGCTCC-TTACACAGGCG-A-CATCTTGGATTACCTACAAAA
* * * * *
77177 TCACAAATAACCATG-CCTCCAAGAACCACCTACCATACAAAACAAAACACAAATCC-A-A--G-
577 TCACAAATCACCTTGTGCTCCAAGAACCACCTACCAAACGAAACAAAACACAAATCCAAGATCGA
77236 A--TC-A-A
642 ACTTCAATA
* * *
77241 -----ATCAGGGAAATCCAAAAAGGCATAAAAAACAGTCAGATGGGATATCAAACACAAAGAATG
1 TCTCCATCAGGAAAATCCAAAAAGGCATAAAAAACAGTCAGATGAGATATCAAACGCAAAGAATG
77301 GAAGAGAGAAAAACGCAGGAGCAATGGCTATATTCCAAAACGACAAACCGCTACTCCACCATGCA
66 GAAGAGAGAAAAACGCAGGAGCAATGGCTATATTCCAAAACGA-AAACCGCTACTCCACCATGCA
** *
77366 AACGTCGTGC-AGACACCCTAGGTATGGTTTCCAACATTGCTGTAGTCAGTGAATGCCTGTCAAA
130 AACGTAATGCTA-ACACCCTAGGTATGGTTTCCAACATTGCTGTAGTCAGTGACTGCCTGTCAAA
* * * *
77430 ACCAAGAGTCCATCTAAATAGGCCCAACA-AGGAGAGAAAAGGT-AAATCGGGACAGAGTAACCT
194 ACCATGAATCCATCTAAATAGGCCCAACAGAGGAGAGAAAAGGTGAAA-CAGGACAGAATAACCT
* *
77493 AAAAAGATGAGC-A-AC-ACAAGAGCAGATTCCCACAGCACAAAATAGAGGCTCATTTCCACTAG
258 ATAAAGATGAGCAACACAACAAGAGCAGATTCCCACAGCACAAAATAGAGGCTCATTTCCATTAG
* * * *
77555 AGT-ACAGCCAAGCAAACACCACACCAGAAAGCCACTTTCAAATAGACCCAAACAAGAATGGAAA
323 AGTGCCAGCCAAGCAACCACCACACCTGAAAGCCACTTACAAATAGACCCAAACAAGAATGGAAA
77619 ATTTCTAAAGTGGAAAAGG-AA--A---AGAACCATAGTAATTTTGTCTCATGGAAAGAACGTAA
388 ATTTCTAAAGTGGAAAAGGAAAGGACTTAGAACCATAGTAATTTTGTCTCATGGAAAGAACGTAA
* * ** *
77678 AGTTTGCAACATTGCTGTCCACAATCTTAGTTAACTTCAAGGTAGCTGCAAAAACTAAGATGAAG
453 AATTTGCAAAATTGCTGTCCACAATCCCAGTGAACTTCAAGGTAGCTGCAAAAACTAAGATGAAG
* * * *
77743 ACATAAACCTTCACCAATTTGGCTCCTTACACAGGCGATATCTTGGATTACGTACAAAATCACAA
518 ACATAGACCTTCGCCAATTTGGCTCCTTACACAGGCGACATCTTGGATTACCTACAAAATCACAA
* *
77808 GTCACCTTGTGCTCCAAGAACCACCTACCAAATGAAACAAAACACAAATCCAAGATCGAACTTTC
583 ATCACCTTGTGCTCCAAGAACCACCTACCAAACGAAACAAAACACAAATCCAAGATCGAAC-TTC
77873 AATA
647 AATA
*
77877 TCTCCATCAGGAAAATCCAAAAAGGCATAAAAAACAGTCAGATGAGATATCAAACGCAGAGAATG
1 TCTCCATCAGGAAAATCCAAAAAGGCATAAAAAACAGTCAGATGAGATATCAAACGCAAAGAATG
* *
77942 GAAGAGAGAAAAACGCAGAAGCAATGGCTATATTCCAAAACGAAAACTGCTACTCCACCATGCAA
66 GAAGAGAGAAAAACGCAGGAGCAATGGCTATATTCCAAAACGAAAACCGCTACTCCACCATGCAA
** * *
78007 ACGTGGTGCTGACACCCTTGGTATGGTTTCCAACATTGCTGTAGTCAGTGACTGCCTGTCAAAAC
131 ACGTAATGCTAACACCCTAGGTATGGTTTCCAACATTGCTGTAGTCAGTGACTGCCTGTCAAAAC
* * * *
78072 CATGAATCCATCTAAATATGCCCAACAAGGAGGAGAGAAAAGGTCAATCAGGACAGAAAAACCTA
196 CATGAATCCATCTAAATAGGCCCAAC-A-GAGGAGAGAAAAGGTGAAACAGGACAGAATAACCTA
* * * *
78137 TAAAGATGAGCAACACAACAAGAGCAAATTCCCACAGCACAAAATAGTGACTTATTTCCATTAGA
259 TAAAGATGAGCAACACAACAAGAGCAGATTCCCACAGCACAAAATAGAGGCTCATTTCCATTAGA
78202 GTGCCAGCCAAGCAACCA-CACACCTGAAAGCCACTTACAAATAGACCCAAACAAGAATGGAAAA
324 GTGCCAGCCAAGCAACCACCACACCTGAAAGCCACTTACAAATAGACCCAAACAAGAATGGAAAA
* *
78266 TTTCTAAAGTGGAAAAGGAAAGAACTTAGAACCATAGTTATTTTGTCTCATGGAAAGAACGTAAA
389 TTTCTAAAGTGGAAAAGGAAAGGACTTAGAACCATAGTAATTTTGTCTCATGGAAAGAACGTAAA
*
78331 ATTTGCAAAATTGTTGTCCAC-ATCACCAGTGAACTTCAAGGTAGC
454 ATTTGCAAAATTGCTGTCCACAATC-CCAGTGAACTTCAAGGTAGC
78376 GACATCTTGG
Statistics
Matches: 1587, Mismatches: 131, Indels: 113
0.87 0.07 0.06
Matches are distributed among these distances:
625 97 0.06
626 38 0.02
627 11 0.01
628 52 0.03
630 1 0.00
631 3 0.00
632 70 0.04
633 50 0.03
634 61 0.04
635 92 0.06
636 33 0.02
637 62 0.04
640 105 0.07
641 100 0.06
642 2 0.00
643 38 0.02
644 4 0.00
645 3 0.00
646 107 0.07
647 47 0.03
648 141 0.09
649 81 0.05
650 81 0.05
651 104 0.07
652 148 0.09
653 56 0.04
ACGTcount: A:0.41, C:0.22, G:0.18, T:0.19
Consensus pattern (650 bp):
TCTCCATCAGGAAAATCCAAAAAGGCATAAAAAACAGTCAGATGAGATATCAAACGCAAAGAATG
GAAGAGAGAAAAACGCAGGAGCAATGGCTATATTCCAAAACGAAAACCGCTACTCCACCATGCAA
ACGTAATGCTAACACCCTAGGTATGGTTTCCAACATTGCTGTAGTCAGTGACTGCCTGTCAAAAC
CATGAATCCATCTAAATAGGCCCAACAGAGGAGAGAAAAGGTGAAACAGGACAGAATAACCTATA
AAGATGAGCAACACAACAAGAGCAGATTCCCACAGCACAAAATAGAGGCTCATTTCCATTAGAGT
GCCAGCCAAGCAACCACCACACCTGAAAGCCACTTACAAATAGACCCAAACAAGAATGGAAAATT
TCTAAAGTGGAAAAGGAAAGGACTTAGAACCATAGTAATTTTGTCTCATGGAAAGAACGTAAAAT
TTGCAAAATTGCTGTCCACAATCCCAGTGAACTTCAAGGTAGCTGCAAAAACTAAGATGAAGACA
TAGACCTTCGCCAATTTGGCTCCTTACACAGGCGACATCTTGGATTACCTACAAAATCACAAATC
ACCTTGTGCTCCAAGAACCACCTACCAAACGAAACAAAACACAAATCCAAGATCGAACTTCAATA
Found at i:83685 original size:28 final size:28
Alignment explanation
Indices: 83653--83706 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
83643 AAGAACCGTC
*
83653 AAACGAAATCGGAGGCGAAGAATAGAAG
1 AAACGAAATCGGAAGCGAAGAATAGAAG
83681 AAACGAAATCGGAAGCGAAGAATAGA
1 AAACGAAATCGGAAGCGAAGAATAGA
83707 GAGAGACAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.52, C:0.11, G:0.30, T:0.07
Consensus pattern (28 bp):
AAACGAAATCGGAAGCGAAGAATAGAAG
Found at i:84879 original size:28 final size:30
Alignment explanation
Indices: 84823--84894 Score: 94
Period size: 29 Copynumber: 2.4 Consensus size: 30
84813 ATACCGTGCA
*
84823 GGTCCCTCTACTTACAAAAAGGGATCAATTT
1 GGTCCCTCTA-TTACAAAAACGGATCAATTT
*
84854 GGTCCC-CTATTACAAAAACTG-TCAATTT
1 GGTCCCTCTATTACAAAAACGGATCAATTT
*
84882 AGTCCCTCTATTA
1 GGTCCCTCTATTA
84895 ACAATTTGGT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
28 12 0.32
29 16 0.43
30 3 0.08
31 6 0.16
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.32
Consensus pattern (30 bp):
GGTCCCTCTATTACAAAAACGGATCAATTT
Found at i:84939 original size:31 final size:31
Alignment explanation
Indices: 84872--84944 Score: 87
Period size: 31 Copynumber: 2.4 Consensus size: 31
84862 ATTACAAAAA
* *
84872 CTGTCAATTTAGTCCCTCTATTAACAATTTG
1 CTGTCAATTGAGTCCCTCTATTAACAATATG
*
84903 GTGTCAATTGAGTCCCTCTACTTAACAGA-AT-
1 CTGTCAATTGAGTCCCTCTA-TTAACA-ATATG
84934 CTGTCAATTGA
1 CTGTCAATTGA
84945 TTATCTGTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
31 28 0.78
32 7 0.19
33 1 0.03
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.37
Consensus pattern (31 bp):
CTGTCAATTGAGTCCCTCTATTAACAATATG
Found at i:85266 original size:31 final size:30
Alignment explanation
Indices: 85191--85267 Score: 102
Period size: 29 Copynumber: 2.6 Consensus size: 30
85181 TGACACCAAA
85191 TTGTAAGTAGAGGGACCAAATTGACAGTTT
1 TTGTAAGTAGAGGGACCAAATTGACAGTTT
* * **
85221 TTAT-AGTAGGGGGACCAAATTGATCCTTTT
1 TTGTAAGTAGAGGGACCAAATTGA-CAGTTT
85251 TTGTAAGTAGAGGGACC
1 TTGTAAGTAGAGGGACC
85268 TATACGGTAT
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
29 18 0.46
30 10 0.26
31 11 0.28
ACGTcount: A:0.30, C:0.12, G:0.27, T:0.31
Consensus pattern (30 bp):
TTGTAAGTAGAGGGACCAAATTGACAGTTT
Found at i:95851 original size:89 final size:89
Alignment explanation
Indices: 95750--95929 Score: 360
Period size: 89 Copynumber: 2.0 Consensus size: 89
95740 ATATGCTATA
95750 TATATATAGTAGCATATATAATGTTTTACCAAGTCTTTGGCTTTTTCCATAGTCAAAAAATGGAT
1 TATATATAGTAGCATATATAATGTTTTACCAAGTCTTTGGCTTTTTCCATAGTCAAAAAATGGAT
95815 AAATTATTAAATTTTAGTCTCTTG
66 AAATTATTAAATTTTAGTCTCTTG
95839 TATATATAGTAGCATATATAATGTTTTACCAAGTCTTTGGCTTTTTCCATAGTCAAAAAATGGAT
1 TATATATAGTAGCATATATAATGTTTTACCAAGTCTTTGGCTTTTTCCATAGTCAAAAAATGGAT
95904 AAATTATTAAATTTTAGTCTCTTG
66 AAATTATTAAATTTTAGTCTCTTG
95928 TA
1 TA
95930 AGTTACAGAA
Statistics
Matches: 91, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
89 91 1.00
ACGTcount: A:0.34, C:0.11, G:0.12, T:0.43
Consensus pattern (89 bp):
TATATATAGTAGCATATATAATGTTTTACCAAGTCTTTGGCTTTTTCCATAGTCAAAAAATGGAT
AAATTATTAAATTTTAGTCTCTTG
Found at i:97401 original size:12 final size:12
Alignment explanation
Indices: 97384--97410 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
97374 CCGAATTAAT
97384 CAGGACAAAACC
1 CAGGACAAAACC
97396 CAGGACAAAACC
1 CAGGACAAAACC
97408 CAG
1 CAG
97411 ATAGGATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.48, C:0.33, G:0.19, T:0.00
Consensus pattern (12 bp):
CAGGACAAAACC
Found at i:101129 original size:60 final size:60
Alignment explanation
Indices: 101065--101229 Score: 197
Period size: 60 Copynumber: 2.8 Consensus size: 60
101055 GTTAATTGCT
* * *
101065 CAAATAAGGGTCTAACGTTTGCAAAAATGTTTAAATAAAGGTCTAATATTTTAATTTGGC
1 CAAATAAGGGCCTAACGTTTGCAAAAATATTCAAATAAAGGTCTAATATTTTAATTTGGC
* * * * * *
101125 CAAATAAAGGCCTAATGTTTGCCAAAATATTCAAATAAGGGTCTGATCTTTTAATTTGGC
1 CAAATAAGGGCCTAACGTTTGCAAAAATATTCAAATAAAGGTCTAATATTTTAATTTGGC
* * * *
101185 CAAATAAGGGCCTAACATTAT-CGAAAATACTCAAATAAGGGTCTA
1 CAAATAAGGGCCTAACGTT-TGCAAAAATATTCAAATAAAGGTCTA
101230 GAGTCGAAAA
Statistics
Matches: 89, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
60 88 0.99
61 1 0.01
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.31
Consensus pattern (60 bp):
CAAATAAGGGCCTAACGTTTGCAAAAATATTCAAATAAAGGTCTAATATTTTAATTTGGC
Found at i:101347 original size:60 final size:60
Alignment explanation
Indices: 101266--101429 Score: 186
Period size: 60 Copynumber: 2.7 Consensus size: 60
101256 AAACTGGCGA
* * * * *
101266 CAGGCCCTTATTTGAGCATTTTCGATAACGTTAGATCCTTATTTGACTAAACTAAAAGAT
1 CAGGCCCTTATTTGAGCATTTTCAATAACATTAGACCCTTATTTGACCAAACTAAAAAAT
* * * * *
101326 CGGGCCGTTATTTGAGCATTTTCAATAACATTAGGCCCTTATTTGGCCAAATTAAAAAAT
1 CAGGCCCTTATTTGAGCATTTTCAATAACATTAGACCCTTATTTGACCAAACTAAAAAAT
* * * *
101386 CAGACCCTTATTTAAGCATTTTGACA-AATATTAGACCCTTATTT
1 CAGGCCCTTATTTGAGCATTTTCA-ATAACATTAGACCCTTATTT
101430 AAGCAATTAA
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
60 85 0.99
61 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (60 bp):
CAGGCCCTTATTTGAGCATTTTCAATAACATTAGACCCTTATTTGACCAAACTAAAAAAT
Found at i:103067 original size:39 final size:41
Alignment explanation
Indices: 103023--103149 Score: 125
Period size: 45 Copynumber: 3.0 Consensus size: 41
103013 ACCACCATGA
*
103023 ACATGAAGAAGAGCACGATCACGATGAAGATCACTACCACC
1 ACATGAAGAAGAGCACGATCACGATGAAGATCACCACCACC
*
103064 ATGAACATGAAGAAGAGCACGATCACGATGATGATCACCACCA-C
1 ----ACATGAAGAAGAGCACGATCACGATGAAGATCACCACCACC
* * * * *
103108 -CATGAACACGATCACGATCATGACG-AGCATCACCACCACC
1 ACATGAAGAAGAGCACGATCACGATGAAG-ATCACCACCACC
103148 AC
1 AC
103150 CACGGCGAGG
Statistics
Matches: 71, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
38 1 0.01
39 30 0.42
40 1 0.01
41 1 0.01
44 1 0.01
45 37 0.52
ACGTcount: A:0.39, C:0.30, G:0.18, T:0.13
Consensus pattern (41 bp):
ACATGAAGAAGAGCACGATCACGATGAAGATCACCACCACC
Found at i:103077 original size:45 final size:45
Alignment explanation
Indices: 103012--103115 Score: 190
Period size: 45 Copynumber: 2.3 Consensus size: 45
103002 TATAAAGGCT
103012 CACCACCATGAACATGAAGAAGAGCACGATCACGATGAAGATCAC
1 CACCACCATGAACATGAAGAAGAGCACGATCACGATGAAGATCAC
* *
103057 TACCACCATGAACATGAAGAAGAGCACGATCACGATGATGATCAC
1 CACCACCATGAACATGAAGAAGAGCACGATCACGATGAAGATCAC
103102 CACCACCATGAACA
1 CACCACCATGAACA
103116 CGATCACGAT
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 56 1.00
ACGTcount: A:0.41, C:0.28, G:0.18, T:0.12
Consensus pattern (45 bp):
CACCACCATGAACATGAAGAAGAGCACGATCACGATGAAGATCAC
Found at i:133882 original size:72 final size:71
Alignment explanation
Indices: 133515--133966 Score: 178
Period size: 72 Copynumber: 6.3 Consensus size: 71
133505 GGTGAAATTG
* * * * *
133515 TGCATAAGGTTCAGGAAGGATCAGATGTTGAAG-CAGAAGGTAAGAAGGGTAGTGAAAAAGAAAG
1 TGCATAAGGGTCAGGAAGGAGCAAATGTTGAAGACA-AAGG-AAGAAGGATGGTGAAAAAGAAAG
* *
133579 TCAAAATG
64 TAAAAATA
* * * * * * * ** *
133587 TG-AGCAACGGTCAGGAAGGAGCAAATGTTGGAGCCAAAGGAACATCGGATGGCGAGGAAGAAGG
1 TGCA-TAAGGGTCAGGAAGGAGCAAATGTTGAAGACAAAGGAAGA-AGGATGGTGAAAAAGAAAG
*
133651 TAAAAGTA
64 TAAAAATA
* * * ** * * * * * ** * *
133659 TGCATAATGTTAAGGAATCATCGAATCTTGAAGACAAAGGTAAGATA-AATGATGCCAGAGAAGG
1 TGCATAAGGGTCAGGAAGGAGCAAATGTTGAAGACAAAGG-AAGA-AGGATGGTGAAAAAGAAAG
* *
133723 TGAAAATG
64 TAAAAATA
* * ** * * * * * * *
133731 TGCACAAGGATCAAAAAGGATCAAAAGTTGAAGA-AGAAGCTAAGACAGG-TGGTGAGAATGGAG
1 TGCATAAGGGTCAGGAAGGAGCAAATGTTGAAGACA-AAG-GAAGA-AGGATGGTGAAAAAGAAA
* * *
133794 GTGAAATTG
63 GTAAAAATA
* * * * *
133803 GGAATAAGGGTCAGGAAGGAGCAAATGTTGAAGCCAAAGG-AGTAATGTATGGTGAGAAAGAAAG
1 TGCATAAGGGTCAGGAAGGAGCAAATGTTGAAGACAAAGGAAG-AA-GGATGGTGAAAAAGAAAG
133867 TAAAAATA
64 TAAAAATA
* * * * * * *
133875 TGCATAAGGATCAAGAAGCATCGAATGTTGTAGACAAAGGTAAGAAGGATGGTGAAAAAGATAGT
1 TGCATAAGGGTCAGGAAGGAGCAAATGTTGAAGACAAAGG-AAGAAGGATGGTGAAAAAGAAAGT
* * *
133940 GAAATTG
65 AAAAATA
*
133947 TGCATAAGAGTCAGGAAGGA
1 TGCATAAGGGTCAGGAAGGA
133967 TTGAACCTTG
Statistics
Matches: 269, Mismatches: 97, Indels: 28
0.68 0.25 0.07
Matches are distributed among these distances:
70 3 0.01
71 7 0.03
72 247 0.92
73 10 0.04
74 2 0.01
ACGTcount: A:0.43, C:0.08, G:0.31, T:0.18
Consensus pattern (71 bp):
TGCATAAGGGTCAGGAAGGAGCAAATGTTGAAGACAAAGGAAGAAGGATGGTGAAAAAGAAAGTA
AAAATA
Found at i:135507 original size:24 final size:24
Alignment explanation
Indices: 135475--135524 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
135465 TGCCTATATC
135475 TGGTAAGGGAAAAACAGAGCCAGA
1 TGGTAAGGGAAAAACAGAGCCAGA
135499 TGGTAAGGGAAAAACAGAGCCAGA
1 TGGTAAGGGAAAAACAGAGCCAGA
135523 TG
1 TG
135525 TTGAGGATGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.44, C:0.12, G:0.34, T:0.10
Consensus pattern (24 bp):
TGGTAAGGGAAAAACAGAGCCAGA
Found at i:136004 original size:48 final size:48
Alignment explanation
Indices: 135930--136024 Score: 138
Period size: 48 Copynumber: 2.0 Consensus size: 48
135920 TGTGCCAATG
* * *
135930 GTATTTTTTCAAGTTAGCATTATTCGAGCCGGGTCAGCTT-ATTATAGA
1 GTATATTTTCAAGTTAGCATTATTCGAACCAGGTCAG-TTCATTATAGA
*
135978 GTATATTTTCAAGTTAGCATTGTTCGAACCAGGTCAGTTCATTATAG
1 GTATATTTTCAAGTTAGCATTATTCGAACCAGGTCAGTTCATTATAG
136025 GGATAAAGCT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
47 2 0.05
48 40 0.95
ACGTcount: A:0.26, C:0.15, G:0.20, T:0.39
Consensus pattern (48 bp):
GTATATTTTCAAGTTAGCATTATTCGAACCAGGTCAGTTCATTATAGA
Found at i:155276 original size:42 final size:42
Alignment explanation
Indices: 155217--155299 Score: 139
Period size: 42 Copynumber: 2.0 Consensus size: 42
155207 TCCTGCAGTG
* * *
155217 GTTGCCCCAGTTCCTAAAGCTGTTGTTTCCAAGCCAAAACCA
1 GTTGCCCCAATTCCTAAACCTGTTGTTACCAAGCCAAAACCA
155259 GTTGCCCCAATTCCTAAACCTGTTGTTACCAAGCCAAAACC
1 GTTGCCCCAATTCCTAAACCTGTTGTTACCAAGCCAAAACC
155300 GGCACCAATG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.28, C:0.33, G:0.14, T:0.25
Consensus pattern (42 bp):
GTTGCCCCAATTCCTAAACCTGTTGTTACCAAGCCAAAACCA
Found at i:155298 original size:21 final size:21
Alignment explanation
Indices: 155236--155299 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 21
155226 GTTCCTAAAG
*
155236 CTGTTGTTTCCAAGCCAAAAC
1 CTGTTGTTACCAAGCCAAAAC
* ** * *
155257 CAGTTG-CCCCAATTCCTAAAC
1 CTGTTGTTACCAA-GCCAAAAC
155278 CTGTTGTTACCAAGCCAAAAC
1 CTGTTGTTACCAAGCCAAAAC
155299 C
1 C
155300 GGCACCAATG
Statistics
Matches: 31, Mismatches: 10, Indels: 4
0.69 0.22 0.09
Matches are distributed among these distances:
20 4 0.13
21 23 0.74
22 4 0.13
ACGTcount: A:0.30, C:0.33, G:0.12, T:0.25
Consensus pattern (21 bp):
CTGTTGTTACCAAGCCAAAAC
Found at i:156294 original size:16 final size:16
Alignment explanation
Indices: 156269--156300 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
156259 TTTGTCTCCC
156269 TTCTCCTCTTCAAAGT
1 TTCTCCTCTTCAAAGT
*
156285 TTCTCTTCTTCAAAGT
1 TTCTCCTCTTCAAAGT
156301 GTTTGTTGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.28, G:0.06, T:0.47
Consensus pattern (16 bp):
TTCTCCTCTTCAAAGT
Found at i:156380 original size:23 final size:23
Alignment explanation
Indices: 156345--156389 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
156335 CATAATCAAT
156345 GTGGGATACTACCACTTTAACAC
1 GTGGGATACTACCACTTTAACAC
* *
156368 GTGGTATATTACCACTTTAACA
1 GTGGGATACTACCACTTTAACA
156390 TGTCCCTCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (23 bp):
GTGGGATACTACCACTTTAACAC
Found at i:163522 original size:332 final size:330
Alignment explanation
Indices: 162911--169066 Score: 4567
Period size: 332 Copynumber: 18.6 Consensus size: 330
162901 AATATAAATT
* * * * *
162911 TTTAATTAGAAATTAATCCGGGGAAAAAAAAGAAAAATGATATTAGAAGCGTGATAAGCCATTCA
1 TTTAATTAGAAATTAATTC--GGAAAAAATAGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCA
* * *
162976 ATCTTTTTGGCATTGAGTTATATATTTTTTATGAGTATTGTAGG-CAAAAATTGA-GAAGAAATT
64 ATCTTTTTGGCGTTGAATTATATATTTTTTATGAGTATTGT-GGCCAAAAATTGAGGAA-AAA-C
* * * * *
163039 TTTCAGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACGCTA-CATCAC-AGTTTTTGACT
126 TTTCGGGTAAATTTTTGCAAAATTTTAGCCGAAATCGTGTACG-AACCATCACGATTTTTTGGCT
* *** * * ** ** * * *
163102 GAAAACAATTTATGGGTCCTCGGTTTTGTTTTGCATGATTTTTGGCGCCAAGTCTCTTTGAATTA
190 AAAAACGCGTTCTGGGGCC-CGACTCAGTTTTGCATGATTTTTGGCGCCAAGACTCATTGAAATA
** * * *
163167 T-TAATATTCATCTAACCAAATCTCTTCCACATTGGAGTTAAGGATTTGTTTTTATGAATATCTG
254 TCT-ATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAACATCTG
* *
163231 AA-CTGTGCTTCGA
318 AATCCG-GTTTCGA
* **
163244 TTTAATTAGAAATTAATTCAGAAAAAATATGAAAAACGATATTAGAAGTATGAAAAGCCCTTCAA
1 TTTAATTAGAAATTAATTCGGAAAAAATA-GAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAA
* * * * *
163309 TATTTTTGGCGTTGAATTATAAATATTTTATGAGTACTGTGGCTAAAAATTGAGTGAAAAACTTT
65 TCTTTTTGGCGTTGAATTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAG-GAAAAACTTT
* ** * * *
163374 AGATTAAATTTTTGCAAAAATTTAACCGAAATTGTGTACGAACCATCACGATTTTTTGGCTAAAA
129 CGGGTAAATTTTTGCAAAATTTTAGCCGAAATCGTGTACGAACCATCACGATTTTTTGGCTAAAA
** * * *
163439 ACAAGTTCTGGGGCCCGACTCAGTTTTGTATGATTTTTGGCGCCAGGATTCATTGAAATATCTAT
194 ACGCGTTCTGGGGCCCGACTCAGTTTTGCATGATTTTTGGCGCCAAGACTCATTGAAATATCTAT
* * * *
163504 ACTT-GTCTAACAAAATCTCAGCCACATTGGATTTAAGAATTTGTTTTTACGAACATCTCAATCC
259 A-TTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAACATCTGAATCC
*
163568 GGTTTCAA
323 GGTTTCGA
**
163576 TTTAATTAGAAATTAATTCGGAAAAAAATAGAAAAAACGATATTAGAAGCGTGAAAAGTACTTCA
1 TTTAATTAGAAATTAATTCGG-AAAAAATAG-AAAAACGATATTAGAAGCGTGAAAAGCCCTTCA
* * * * *
163641 ATCTCTTTGCCGTT-ATATTATATATATTTTATGAGTATTGTGGCTAAAAATTGAGGGAAAAACC
64 ATCTTTTTGGCGTTGA-ATTATATATTTTTTATGAGTATTGTGGCCAAAAATTGA-GGAAAAACT
* * * * * * * *
163705 TTC-AGTTAATTTTTCGCAAAAATTTAGCTGAAATCGTGTACTAACCATCATGGTTTGTTGG-TA
127 TTCGGGTAAATTTTT-GCAAAATTTTAGCCGAAATCGTGTACGAACCATCACGATTTTTTGGCTA
* * * * * *
163768 AAAACGCGTTATGGGGCCCCGGCTCAGTCTTCCATGATTTTTGGCGCCAAGAATAATTGAAATAT
191 AAAACGCGTTCTGGGG-CCCGACTCAGTTTTGCATGATTTTTGGCGCCAAGACTCATTGAAATAT
** * ** * * *
163833 CTATATTCATCTAAAGAAATCTAAGGTATATTGGATTTAAGGTTTTGTTTTTAC-AAGCATCTCA
255 CTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAA-CATCTGA
163897 ATCCGGTTTCGA
319 ATCCGGTTTCGA
* *
163909 TTTAATTAGAAATTAAATCGGAAAAAAATAAGAAAAACGATATTAGAAGTGTGTAAAA-CCCTTC
1 TTTAATTAGAAATTAATTCGG-AAAAAAT-AGAAAAACGATATTAGAAGCGTG-AAAAGCCCTTC
* * * * *
163973 AATCTTTTAGGCGTTGAGTTATATATTTTTTATGAGTATTGTGGCAAAAAATTAAGG-AGAACTG
63 AATCTTTTTGGCGTTGAATTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGGAAAAACT-
* * * * * * * *
164037 TGTCCGGTCAATTTTTCCAAAATTTCAACCGAAATCGTGTACTAACCATCAC-AATTTTTGACTA
127 T-TCGGGTAAATTTTTGCAAAATTTTAGCCGAAATCGTGTACGAACCATCACGATTTTTTGGCTA
* * ** * *
164101 AAAACGCGTTCTGAGGCCCAGACTCTGTTTTGCATGATTTTTGGCGCCAACTCTCATTGATACAT
191 AAAACGCGTTCTGGGGCCC-GACTCAGTTTTGCATGATTTTTGGCGCCAAGACTCATTGAAATAT
* * * * * *
164166 TTATATCCATCTAACCAAACCTCA-CCAACAATGGATTTAAGGATATGTTTTTACGAGCATCTGA
255 CTATATTCATCTAACCAAATCTCAGCC-ACATTGGATTTAAGGATTTGTTTTTACGAACATCTGA
**
164230 ATCATGTTTCGA
319 ATCCGGTTTCGA
* * * *
164242 TTTAATTAGAAATTAATTCGG-AAAAATAGGAAAACTGATATAAGAAGCGTGAAAAACCTTTCAA
1 TTTAATTAGAAATTAATTCGGAAAAAATAGAAAAAC-GATATTAGAAGCGTGAAAAGCCCTTCAA
* * * * * *
164306 TCTTTTTGGCGTT-AGATTATATATCTTATACGAGTATCGTGACCAAAAATTGAGGAAAATAATT
65 TCTTTTTGGCGTTGA-ATTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGGAAAA-ACTT
** * * * **
164370 TCAAGTAAATTTTAGCAAAATTTTAGCCAAAATCGTGTACTAACCATCACG-GGTTTTGGCTAAA
128 TCGGGTAAATTTTTGCAAAATTTTAGCCGAAATCGTGTACGAACCATCACGATTTTTTGGCTAAA
* * * *
164434 AACACGTTAC-GGGGCCCGAGCTCAGTTTTGCATGATTTTTGGCGCTAAGACTCCTTCAAATATC
193 AACGCGTT-CTGGGGCCCGA-CTCAGTTTTGCATGATTTTTGGCGCCAAGACTCATTGAAATATC
* * ** * * *
164498 TATATTCACCTAACTAAATCTCTTCCACATTGGTTTTAAGGATTTTTTTTTTACGAATATCTGAA
256 TATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGA-TTTGTTTTTACGAACATCTGAA
***
164563 TTTTGTTTCGA
320 TCCGGTTTCGA
* * *
164574 TTTAATAAGAAATTAATTCGGAAAAAAATATGAGAAACGATATTAGAAGCGTGAAAAGCCTTTCA
1 TTTAATTAGAAATTAATTCGG-AAAAAATA-GAAAAACGATATTAGAAGCGTGAAAAGCCCTTCA
* * * * *
164639 GTCTTTTTGGAGTTGAATTATATATTTCTTATGAGTATTGTGACCAAAAATTGAGGAAAATTCTT
64 ATCTTTTTGGCGTTGAATTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGGAAAA-ACTT
* *** *
164704 TCGGGTAAA----T------TTTT-GCCAAAATCGTGTAATCACCATCAC-AGTTTTTT-ACTAA
128 TCGGGTAAATTTTTGCAAAATTTTAGCCGAAATCGTGTACGAACCATCACGA-TTTTTTGGCTAA
** * * * *
164756 AAACGCGTT-TCGGGGCTTTGGCTCAGTTTTCCATGATTTTTGGCACCAAGACTAATTGAAATAT
192 AAACGCGTTCT-GGGGC-CCGACTCAGTTTTGCATGATTTTTGGCGCCAAGACTCATTGAAATAT
* * * ** * * *
164820 CTATATTCATCTAACAAAATCTCAGCTATA-TGTGATTTAAGTTTTTGTTTTTACGAGCATTTCA
255 CTATATTCATCTAACCAAATCTCAGCCACATTG-GATTTAAGGATTTGTTTTTACGAACATCTGA
*
164884 ATCCGGTTTTGA
319 ATCCGGTTTCGA
* * *
164896 TTTGATTACAAATTAATTCGGGGGAAAAAA-AGAAAAAACGATATTAGAAGCGTGAGAAGCCCTT
1 TTTAATTAGAAATTAATTC---GGAAAAAATAG-AAAAACGATATTAGAAGCGTGAAAAGCCCTT
* * * * * ** * **
164960 CATTCATTTTGGTGTTGAGTTATATATTTTTTATAAGTATCATGGCCAAAAATTGATGAGAAATG
62 CAATCTTTTTGGCGTTGAATTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGGA-AAAAC
* ** * * * * *
165025 TTTTGGGTCTATATTTGCAAAATTTTAGCCGAAATCGTGTATG-----TCACG-GTCTTTGACTA
126 TTTCGGGTAAATTTTTGCAAAATTTTAGCCGAAATCGTGTACGAACCATCACGATTTTTTGGCTA
* * * * *
165084 AAAACGCGTTCCCGGGTCCCTGACTCAGTTTTGCATGATTTTTGGCACCAAGTCTCATTGATATA
191 AAAACGCGTT-CTGGGGCCC-GACTCAGTTTTGCATGATTTTTGGCGCCAAGACTCATTGAAATA
* * * * * * *
165149 TTTATATCCATATAACCAAACCTCACCCACAATGGATTTAAGGATTTGTTTTTACGAGCATCTGA
254 TCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAACATCTGA
** *
165214 ATCATGTTTTGA
319 ATCCGGTTTCGA
* * * * * * *
165226 TTTAATTGGAAATTAATTCAG-AAAAATGGGAAAACCGAAATTAGAAGCATGAAAAGCCTTTCAA
1 TTTAATTAGAAATTAATTCGGAAAAAAT-AGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAA
* ** **
165290 TCTTTTTGGAGTTGAATTATATATTTTTTATGAGTATTGTAACCAAAAATTGAGGATATTTA-TT
65 TCTTTTTGGCGTTGAATTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGGA-A-AAACTT
* * ** * *
165354 TCGGGTAAATTTTTGTAAAA-TTTAGCCAAAATCGTGTACG--TTATCACGGGGTTTTTTTTGCT
128 TCGGGTAAATTTTTGCAAAATTTTAGCCGAAATCGTGTACGAACCATCAC---GATTTTTTGGCT
* * * * * *
165416 AAAAATGCATTCCGGGGCCCCGACTCAATTTTTG-ATGACTTTTGGCGACAAGACTCATTGAAAT
190 AAAAACGCGTTCTGGGG-CCCGACTC-AGTTTTGCATGATTTTTGGCGCCAAGACTCATTGAAAT
* * * * * *
165480 ATCTATATTCATTTAACGAAATCTCAGCTATATTTGATTTAA-GATTTTGTTTTTACGAGCATCT
253 ATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGA-TTTGTTTTTACGAACATCT
*
165544 CAATCCGGTTTCGA
317 GAATCCGGTTTCGA
* * * * * *
165558 TTTGATTACAAATTAATTCGGAAAAAATAGGAAAAA-GAAATTAGAAACGTGAGAATCCCTTCAA
1 TTTAATTAGAAATTAATTCGGAAAAAATA-GAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAA
* * **
165622 TCTTTTTGGCGTTGAGTTATATATTTTTTATGAGTATTGTGGCAAAAAATTGAGGAGAAATGTTT
65 TCTTTTTGGCGTTGAATTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGGA-AAAACTTT
* * * * *** *
165687 CGGGTCAATTTTTACAAAATTTTAGTCGAAATCGTGTACAAACCATCACGA-TTTTTAATTAGAA
129 CGGGTAAATTTTTGCAAAATTTTAGCCGAAATCGTGTACGAACCATCACGATTTTTTGGCTAAAA
* * * * *
165751 ACGCATTCCGGGGCCCTGACTCTGTTTTGCATAGATTTTTGGCGCCAAGTCTCATTGATATATCT
194 ACGCGTTCTGGGGCCC-GACTCAGTTTTGCAT-GATTTTTGGCGCCAAGACTCATTGAAATATCT
* * * * *
165816 ATATCCATCTAACCAAACCTCACCCACAATGGATTTAAGGATTTCTTTTTACGAGA-ATCTGAAT
257 ATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGA-ACATCTGAAT
** *
165880 CATGTTTCAA
321 CCGGTTTCGA
* * * * * * *
165890 TTTAATTAGAATTTAATTTGG-AAAAATAGGAAAACCGAAATTAGAAGCATGAAAATCCTTTCAA
1 TTTAATTAGAAATTAATTCGGAAAAAATA-GAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAA
* * **
165954 TCTTTTTGGAGTTGAATTATATATTTTTAATGAGTATTGTAACCAAAAATTGAGG-AAAACTAAT
65 TCTTTTTGGCGTTGAATTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGGAAAAACT--T
* * * *
166018 TCGGGTAAATTTTTGCAAAATTTTAGCCAAAATCGTGTACTAACCATCACGGTTTTTT-GCTTAA
128 TCGGGTAAATTTTTGCAAAATTTTAGCCGAAATCGTGTACGAACCATCACGATTTTTTGGCTAAA
* ** * * * ** * *
166082 AACGCATTCTGGGGCCGCGGGTCAATTTTCCATGAATTTTGGCATCAAGACTCTTTGAAACATCT
193 AACGCGTTCTGGGGCC-CGACTCAGTTTTGCATGATTTTTGGCGCCAAGACTCATTGAAATATCT
* * * * * ** * * * * *
166147 ATATTCATTTAACGATATCTCAGCTATATTTTATTTAAGGTTTTGTCTTTACGAGCATATCAATC
257 ATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAACATCTGAATC
166212 CGGTTTCGA
322 CGGTTTCGA
* * *
166221 TTTGATTACAAATTAATTCGGAAAAAATAGCAAAAACGATATTAGAAGCGTGAGAAGCCCTTCAA
1 TTTAATTAGAAATTAATTCGGAAAAAATAG-AAAAACGATATTAGAAGCGTGAAAAGCCCTTCAA
* * * * ** * **
166286 TCATTTTGGCCTTGAGTTATATATTTTTTATGAGTGTCATGGCCAAAAATTGATGAGAAATGTTT
65 TCTTTTTGGCGTTGAATTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGGA-AAAACTTT
** * * * * * *
166351 CGTATCATTTTTTACAAAATTTTAGCCGAAATGGTATAC-ATTA-CATCACGA-TTTTTGGCTGA
129 CGGGTAAATTTTTGCAAAATTTTAGCCGAAATCGTGTACGA--ACCATCACGATTTTTTGGCTAA
* * * * *
166413 AAACGCGTTCCGGGGCCCCGGCTCAGTTTTGCATAATTTTTAGCGCCAAGACTCATTGAATTATC
192 AAACGCGTTCTGGGG-CCCGACTCAGTTTTGCATGATTTTTGGCGCCAAGACTCATTGAAATAT-
* * *
166478 CT-TATTCATC-ATTCCAAATCTCAGCCACGTTGGATTTAAGGATTT-TATTTTAC-AAGCATTT
255 CTATATTCATCTA-ACCAAATCTCAGCCACATTGGATTTAAGGATTTGT-TTTTACGAA-CATCT
**
166539 GAATCATGTTTCGA
317 GAATCCGGTTTCGA
* * * * *
166553 TTTAA-TCGAAAATTAATTCGGAAACATTAA-AAAAAAATGATGTTAGAAGCGTGAAAAGCGCTT
1 TTTAATTAG-AAATTAATTCGGAAA-A--AATAGAAAAACGATATTAGAAGCGTGAAAAGCCCTT
* * * * **
166616 CAACCTTTTTGGCATTGAATTATATATTTTTTACGAGT-TTTTCGGGTTGAATTATATATTTTTT
62 CAATCTTTTTGGCGTTGAATTATATATTTTTTATGAGTATTGT--GG-CCAA--A-A-A------
** * * * *
166680 TATGAGTTTTGCGGTTCAAAAA-TTGAGGAAAAATCTCTTGGGTCAATTTTCGCAAAATTATCGC
114 T-TGA-------GG---AAAAACTTTCGG-------------GTAAATTTTTGCAAAATTTTAGC
* * * * * * *
166744 TGAAATCGTGTACTAACCATCACGA-TTCTTGGCTGAAAACGCGTTCCAGGGCCCCGGCTCAGTT
155 CGAAATCGTGTACGAACCATCACGATTTTTTGGCTAAAAACGCGTT-CTGGGGCCCGACTCAGTT
*
166808 TTGCATGATTTTTGGCGCCAAGACTCATTGAAATATCTATATTCATC-ATCCCAAATCTCAGCCA
219 TTGCATGATTTTTGGCGCCAAGACTCATTGAAATATCTATATTCATCTA-ACCAAATCTCAGCCA
* * * ** *
166872 CATTGGATTTAAGGATTTGATTTTACGAGCATTTGAATCATGTTGCGA
283 CATTGGATTTAAGGATTTGTTTTTACGAACATCTGAATCCGGTTTCGA
** * * *
166920 TTTAATCGGAAATTAATTCGG-----A-A-AAAAATGATATTAGAAGCGTGTAAAGCCGTTCAAT
1 TTTAATTAGAAATTAATTCGGAAAAAATAGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAAT
* * **
166978 CTTTTTGGCGTTGAATTATATATTTTCTACGAGTATT-TCGGTTAAAAATTGAGGAAAAATCTTT
66 CTTTTTGGCGTTGAATTATATATTTTTTATGAGTATTGT-GGCCAAAAATTGAGGAAAAA-CTTT
* * * * * * * * *
167042 CGGGTCAATTTTTGCAAAATTATCGCCGAAATCGTGTACTAAACATCAC-AATTATCGGCTGAAA
129 CGGGTAAATTTTTGCAAAATTTTAGCCGAAATCGTGTACGAACCATCACGATTTTTTGGCTAAAA
* * * * *
167106 ACGCGTTCCAGGGCCCCGGCTCAGTTTTGCATGATATTTGGCGCCAAGACTCATTGAATTATCCT
194 ACGCGTT-CTGGGGCCCGACTCAGTTTTGCATGATTTTTGGCGCCAAGACTCATTGAAATAT-CT
* * * *
167171 ATATTCATC-ATCCCAAATCTCAGCCACATTGGATTTAAGGATTTGATTTTACGAGCATTTGAAT
257 ATATTCATCTA-ACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAACATCTGAAT
**
167235 CATGTTTCGA
321 CCGGTTTCGA
* ** * * **
167245 TTAAATCGGAAATTAATTCGGAAAAAGTTAAAAAAAATTATATATTAGAAGCGTGGAAAA-CCCT
1 TTTAATTAGAAATTAATTCGGAAAAA-AT-AGAAAAA--CGATATTAGAAGCGT-GAAAAGCCCT
* * * ** *
167309 TCAATCTATTTGGCGTTGAATTATATATTTTTTATGATTATTGCGGTTAAAAACTGAGGAAAAAT
61 TCAATCTTTTTGGCGTTGAATTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGGAAAAA-
* **
167374 CTTTCGGG--------T-C--AATTTTTGCCGAAATCGTGTACG--TTATCACGA-TTTTTGGCT
125 CTTTCGGGTAAATTTTTGCAAAATTTTAGCCGAAATCGTGTACGAACCATCACGATTTTTTGGCT
* * * *
167425 AAAAACGCGTTCCGGGGCCCCGACTCAGTTTTCCATGATTTTTGGTGCCAAGACTCATTGAATTA
190 AAAAACGCGTTCTGGGG-CCCGACTCAGTTTTGCATGATTTTTGGCGCCAAGACTCATTGAAATA
* * * * * *
167490 TCCT-TATTCATC-ATTCCAAATCTCAGCCACGTTGTATTTAAGGATTTGATTTTACGAGCATTT
254 T-CTATATTCATCTA-ACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAACATCT
*** *
167553 GAATCATATTTCAA
317 GAATCCGGTTTCGA
** * * * * * **
167567 TTTAATCGGAAATTAATTCGGAAACATTAAAATAAATGATATTAGAAGCGTGCAAAGCGTTTCAA
1 TTTAATTAGAAATTAATTCGGAAAAAATAGAA-AAACGATATTAGAAGCGTGAAAAGCCCTTCAA
* * * * ** *
167632 TC-TTTTGGAGTTGAATTATATATTTTTTTACGAGTTTTGCGGTTTAAAAATTGAGGAAATATCT
65 TCTTTTTGGCGTTGAATTATATA-TTTTTTATGAGTATTGTGG-CCAAAAATTGAGGAAA-AACT
* * * * *
167696 CTCGGGTAAATTTTTGCAAAATTATT-GCCTAAATCGTGTACTAACCATCACGA-TTTTCGGCTG
127 TTCGGGTAAATTTTTGCAAAATT-TTAGCCGAAATCGTGTACGAACCATCACGATTTTTTGGCTA
* * * * * *
167759 AAAACGCGTTCCGGGGCCCCGGCTAAGCTTTGCGTGATTTTTGGCGCCAAGACTCATTGAATTAT
191 AAAACGCGTTCTGGGG-CCCGACTCAGTTTTGCATGATTTTTGGCGCCAAGACTCATTGAAATAT
* * * * *
167824 CCT-TATTCATC-ATTCAAAATCTTAGCCACGTTGGATTTAAGGATTTAG-TTTTGC-AAGCATC
255 -CTATATTCATCTA-ACCAAATCTCAGCCACATTGGATTTAAGGATTT-GTTTTTACGAA-CATC
** *
167885 TGAATCATGTTACGA
316 TGAATCCGGTTTCGA
** ** * * ** * *
167900 TTTAATCGGAAATTAATTCATAAAAATTAAAAAAAATTATACTAGAAGGGTGGAAAA-CCCTTCA
1 TTTAATTAGAAATTAATTCGGAAAAAAT-AGAAAAACGATATTAGAAGCGT-GAAAAGCCCTTCA
* * * **
167964 ATCTATTTGTCATTGAATTATATATTTTTTATGAGTATTGTGGTTAAAAATTGAGGAAAAATCTT
64 ATCTTTTTGGCGTTGAATTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGGAAAAA-CTT
* * * * * * *
168029 TCGGGTCAATTTTTGCAAAATTTTTGCCGAAATCTTGTACTAACCATCACGA-TTTTCGGTTGAA
128 TCGGGTAAATTTTTGCAAAATTTTAGCCGAAATCGTGTACGAACCATCACGATTTTTTGGCTAAA
* * *
168093 AACGCGTTCCGGGGCCCCAGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCATTGAATTATCC
193 AACGCGTTCTGGGGCCCGA-CTCAGTTTTGCATGATTTTTGGCGCCAAGACTCATTGAAATAT-C
* * ** * * * * *
168158 T-TATTCATC-ATTCCAAATCTCAGTCACGCTGTATTTAAGGATTTGATTTTATGAGCATTTGAA
256 TATATTCATCTA-ACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAACATCTGAA
*** *
168221 TCATATTTCAA
320 TCCGGTTTCGA
** * * * *
168232 TTTAATCGGAAATTAATTCAG-AAAAATAAAAAAATGATATTAGAAGCGTGCAAAGCCCTTCAAT
1 TTTAATTAGAAATTAATTCGGAAAAAATAGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAAT
* * * * ** * *
168296 CTTTTTGGCATTGAATTATATA-ATTTTACCGAGTATTGCGGTTAAAAATTGGGGAAAAATCTGT
66 CTTTTTGGCGTTGAATTATATATTTTTTA-TGAGTATTGTGGCCAAAAATTGAGGAAAAA-CTTT
* * * * * * * *
168360 CGGATCAATTTTTGCAAAATTTTTGCCGAAATCGTGTGCTATCCATCACGA-TTCTTGGCTGAAA
129 CGGGTAAATTTTTGCAAAATTTTAGCCGAAATCGTGTACGAACCATCACGATTTTTTGGCTAAAA
* * * * * * * * *
168424 ACGTGTTGTAGGGCCCCGTCTCATTTTTGCATGCTTTTTTTGCGCCAAGACTTACTGAAATATCT
194 ACGCGTTCT-GGGGCCCGACTCAGTTTTGCATG-ATTTTTGGCGCCAAGACTCATTGAAATATCT
* * * * *
168489 CTATTCATC-ATCCCAAATCTCAGCCACATTGGATTTAAGGATTTGATTTTACGAGCATTTGAAT
257 ATATTCATCTA-ACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAACATCTGAAT
*** *
168553 CATATTTCAA
321 CCGGTTTCGA
** * * * * *
168563 TTTAATCGGAAATTAATTTGG-AAAAATAAAAAAACGATCTTAGAAGCGTGCAAAGCCCTTTAAT
1 TTTAATTAGAAATTAATTCGGAAAAAATAGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAAT
* * ** * *
168627 CTTTTTGGCATTGAA-T-TATATTTTTTATGAGTATTGCGGTTAAAAATTGGGGAAATATCTTTC
66 CTTTTTGGCGTTGAATTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGGAAA-AACTTTC
* * * * * * *
168690 GGG--------T-C-AATTTTTA-CCGAAATCGTGTTCTAACTATCAC-AATTCTTGGTTGAAAA
130 GGGTAAATTTTTGCAAAATTTTAGCCGAAATCGTGTACGAACCATCACGATTTTTTGGCT-AAAA
** * * * * *
168743 CACGTTCCGGGGCCGGGGCCCCGGCTAAGTTTTGCATGATTTTTGGCCCCAAGACTCATTGAATT
194 -ACG---C-GTTCTGGGG-CCCGACTCAGTTTTGCATGATTTTTGGCGCCAAGACTCATTGAAAT
* * * * * ** * *
168808 ATCTATATTAAAC-ATCCCAAATCTCAGCCACCTTAGATTTAAGGATTTAATTTTACGAGCATTT
253 ATCTATATTCATCTA-ACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAACATCT
* ***
168872 AAATCATATTTCGA
317 GAATCCGGTTTCGA
* ** * *
168886 TCTAATCGGAAATTAATTCGG--AAAATA-AAAAATGATATTAGAAGCGTGGAAAGCCCTTCAAT
1 TTTAATTAGAAATTAATTCGGAAAAAATAGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAAT
* * * * ** *
168948 CTTTTTGGAGTTGAATTATACACTTTTTATCAGTATTGTGGTTAAAAATTGAGGAAAAATATTTC
66 CTTTTTGGCGTTGAATTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGGAAAAA-CTTTC
* * * * * *
169013 GGGTCAATTTTTGCAAAATTTTTGCCAAAATCTTGTACTAACCATCATGATTTT
130 GGGTAAATTTTTGCAAAATTTTAGCCGAAATCGTGTACGAACCATCACGATTTT
169067 CAGCTGAAAA
Statistics
Matches: 4783, Mismatches: 802, Indels: 474
0.79 0.13 0.08
Matches are distributed among these distances:
317 1 0.00
318 51 0.01
319 46 0.01
320 30 0.01
321 51 0.01
322 147 0.03
323 419 0.09
324 150 0.03
325 117 0.02
326 23 0.00
327 96 0.02
328 7 0.00
329 69 0.01
330 309 0.06
331 570 0.12
332 1232 0.26
333 882 0.18
334 183 0.04
335 23 0.00
336 82 0.02
337 9 0.00
338 3 0.00
339 1 0.00
345 4 0.00
346 4 0.00
352 1 0.00
353 2 0.00
354 4 0.00
355 3 0.00
356 4 0.00
357 2 0.00
358 63 0.01
359 4 0.00
366 3 0.00
367 181 0.04
368 7 0.00
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.35
Consensus pattern (330 bp):
TTTAATTAGAAATTAATTCGGAAAAAATAGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAAT
CTTTTTGGCGTTGAATTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGGAAAAACTTTCG
GGTAAATTTTTGCAAAATTTTAGCCGAAATCGTGTACGAACCATCACGATTTTTTGGCTAAAAAC
GCGTTCTGGGGCCCGACTCAGTTTTGCATGATTTTTGGCGCCAAGACTCATTGAAATATCTATAT
TCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAACATCTGAATCCGGT
TTCGA
Found at i:168977 original size:323 final size:318
Alignment explanation
Indices: 166653--169024 Score: 2596
Period size: 323 Copynumber: 7.2 Consensus size: 318
166643 TTTTTACGAG
*
166653 TTTTTCGG-GTTGAATTATATATTTTTTTATGAGTTTTGCGGTTCAAAAATTGAGGAAAAATCTC
1 TTTTT-GGAGTTGAATTATATA-TTTTTTATGAGTATTGCGGTT-AAAAATTGAGGAAAAATCT-
166717 TT-GGGTCAATTTTCGCAAAATTATCGCTGAAATCGTGTACTAACCATCACGATTCTTGGCTGAA
62 TTCGGGTCAA-TTT-------TTATC-C-GAAATCGTGTACTAACCATCACGATT-TTGGCTGAA
* * *
166781 AACGCGTTCCAGGGCCCCGGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCATTGAAATAT-C
116 AACACGTTCCGGGGCCCCGGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCATTGAATTATCC
166845 TATATTCATCATCCCAAATCTCAGCCACATTGGATTTAAGGATTTGATTTTACGAGCATTTGAAT
181 T-TATTCATCATCCCAAATCTCAGCCACATTGGATTTAAGGATTTGATTTTACGAGCATTTGAAT
* * *
166910 CATGTTGCGATTTAATCGGAAATTAATTCGG-----AAAAAAATGATATTAGAAGCGTGTAAAGC
245 CATATTTCGATTTAATCGGAAATTAATTCGGAAAATAAAAAAATGATATTAGAAGCGTGCAAAGC
*
166970 CGTTCAATC
310 CCTTCAATC
* * * *
166979 TTTTTGGCGTTGAATTATATATTTTCTACGAGTATTTCGGTTAAAAATTGAGGAAAAATCTTTCG
1 TTTTTGGAGTTGAATTATATATTTTTTATGAGTATTGCGGTTAAAAATTGAGGAAAAATCTTTCG
* * * *
167044 GGTCAATTTTTGCAAAATTATCGCCGAAATCGTGTACTAAACATCACAATTATCGGCTGAAAACG
66 GGTCAA--TTT------TTAT--CCGAAATCGTGTACTAACCATCACGATT-TTGGCTGAAAACA
* *
167109 CGTTCCAGGGCCCCGGCTCAGTTTTGCATGATATTTGGCGCCAAGACTCATTGAATTATCCTATA
120 CGTTCCGGGGCCCCGGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCATTGAATTATCCT-TA
*
167174 TTCATCATCCCAAATCTCAGCCACATTGGATTTAAGGATTTGATTTTACGAGCATTTGAATCATG
184 TTCATCATCCCAAATCTCAGCCACATTGGATTTAAGGATTTGATTTTACGAGCATTTGAATCATA
* * *
167239 TTTCGATTAAATCGGAAATTAATTCGGAAAAAGTTAAAAAAAATTATATATTAGAAGCGTGGAAA
249 TTTCGATTTAATCGGAAATTAATTCGG-AAAA--T-AAAAAAA-T-GATATTAGAAGCGTGCAAA
*
167304 ACCCTTCAATC
308 GCCCTTCAATC
* * * *
167315 TATTTGGCGTTGAATTATATATTTTTTATGATTATTGCGGTTAAAAACTGAGGAAAAATCTTTCG
1 TTTTTGGAGTTGAATTATATATTTTTTATGAGTATTGCGGTTAAAAATTGAGGAAAAATCTTTCG
* * * *
167380 GGTCAATTTTT-GCCGAAATCGTGTACGT---TATCACGATTTTTGGCTAAAAACGCGTTCCGGG
66 GGTCAATTTTTATCCGAAATCGTGTAC-TAACCATCACGA-TTTTGGCTGAAAACACGTTCCGGG
* * * *
167441 GCCCCGACTCAGTTTTCCATGATTTTTGGTGCCAAGACTCATTGAATTATCCTTATTCATCATTC
129 GCCCCGGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCATTGAATTATCCTTATTCATCATCC
* * *
167506 CAAATCTCAGCCACGTTGTATTTAAGGATTTGATTTTACGAGCATTTGAATCATATTTCAATTTA
194 CAAATCTCAGCCACATTGGATTTAAGGATTTGATTTTACGAGCATTTGAATCATATTTCGATTTA
**
167571 ATCGGAAATTAATTCGGAAACATTAAAATAAATGATATTAGAAGCGTGCAAAGCGTTTCAATC
259 ATCGGAAATTAATTCGGAAA-A-TAAAA-AAATGATATTAGAAGCGTGCAAAGCCCTTCAATC
* * * *
167634 -TTTTGGAGTTGAATTATATATTTTTTTACGAGTTTTGCGGTTTAAAAATTGAGGAAATATCTCT
1 TTTTTGGAGTTGAATTATATA-TTTTTTATGAGTATTGCGG-TTAAAAATTGAGGAAAAATCTTT
* *
167698 CGGGTAAATTTTTGCAAAATTATTGCCTAAATCGTGTACTAACCATCACGATTTTCGGCTGAAAA
64 CGGGTCAA--TTT------TTA-T-CCGAAATCGTGTACTAACCATCACGATTTT-GGCTGAAAA
* * * *
167763 CGCGTTCCGGGGCCCCGGCTAAGCTTTGCGTGATTTTTGGCGCCAAGACTCATTGAATTATCCTT
118 CACGTTCCGGGGCCCCGGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCATTGAATTATCCTT
* * * * * * *
167828 ATTCATCATTCAAAATCTTAGCCACGTTGGATTTAAGGATTT-AGTTTTGCAAGCATCTGAATCA
183 ATTCATCATCCCAAATCTCAGCCACATTGGATTTAAGGATTTGA-TTTTACGAGCATTTGAATCA
* * ** * * * * *
167892 TGTTACGATTTAATCGGAAATTAATTCATAAAAATTAAAAAAAATTATACTAGAAGGGTGGAAAA
247 TATTTCGATTTAATCGGAAATTAATTC-GGAAAA-T-AAAAAAATGATATTAGAAGCGTGCAAAG
167957 CCCTTCAATC
309 CCCTTCAATC
* * *
167967 TATTTGTCA-TTGAATTATATATTTTTTATGAGTATTGTGGTTAAAAATTGAGGAAAAATCTTTC
1 TTTTTG-GAGTTGAATTATATATTTTTTATGAGTATTGCGGTTAAAAATTGAGGAAAAATCTTTC
* *
168031 GGGTCAATTTTTGCAAAATTTTTGCCGAAATCTTGTACTAACCATCACGATTTTCGGTTGAAAAC
65 GGGTCAATTTTT-----A----T-CCGAAATCGTGTACTAACCATCACGATTTT-GGCTGAAAAC
* *
168096 GCGTTCCGGGGCCCCAGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCATTGAATTATCCTTA
119 ACGTTCCGGGGCCCCGGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCATTGAATTATCCTTA
* * ** * *
168161 TTCATCATTCCAAATCTCAGTCACGCTGTATTTAAGGATTTGATTTTATGAGCATTTGAATCATA
184 TTCATCATCCCAAATCTCAGCCACATTGGATTTAAGGATTTGATTTTACGAGCATTTGAATCATA
* *
168226 TTTCAATTTAATCGGAAATTAATTCAGAAAAATAAAAAAATGATATTAGAAGCGTGCAAAGCCCT
249 TTTCGATTTAATCGGAAATTAATTC-GGAAAATAAAAAAATGATATTAGAAGCGTGCAAAGCCCT
168291 TCAATC
313 TCAATC
* * * *
168297 TTTTTGGCA-TTGAATTATATA-ATTTTACCGAGTATTGCGGTTAAAAATTGGGGAAAAATCTGT
1 TTTTTGG-AGTTGAATTATATATTTTTTA-TGAGTATTGCGGTTAAAAATTGAGGAAAAATCTTT
* * *
168360 CGGATCAATTTTTGCAAAATTTTTGCCGAAATCGTGTGCTATCCATCACGATTCTTGGCTGAAAA
64 CGGGTCAATTTTT-----A----T-CCGAAATCGTGTACTAACCATCACGATT-TTGGCTGAAAA
** *** * * * * * * *
168425 CGTGTTGTAGGGCCCCGTCTCATTTTTGCATGCTTTTTTTGCGCCAAGACTTACTGAAATAT-CT
118 CACGTTCCGGGGCCCCGGCTCAGTTTTGCATG-ATTTTTGGCGCCAAGACTCATTGAATTATCCT
168489 CTATTCATCATCCCAAATCTCAGCCACATTGGATTTAAGGATTTGATTTTACGAGCATTTGAATC
182 -TATTCATCATCCCAAATCTCAGCCACATTGGATTTAAGGATTTGATTTTACGAGCATTTGAATC
* * * *
168554 ATATTTCAATTTAATCGGAAATTAATTTGGAAAAATAAAAAAACGATCTTAGAAGCGTGCAAAGC
246 ATATTTCGATTTAATCGGAAATTAATTCGG-AAAATAAAAAAATGATATTAGAAGCGTGCAAAGC
*
168619 CCTTTAATC
310 CCTTCAATC
* *
168628 TTTTTGGCA-TTGAA-T-TATATTTTTTATGAGTATTGCGGTTAAAAATTGGGGAAATATCTTTC
1 TTTTTGG-AGTTGAATTATATATTTTTTATGAGTATTGCGGTTAAAAATTGAGGAAAAATCTTTC
* * * *
168690 GGGTCAATTTTTA-CCGAAATCGTGTTCTAACTATCACAATTCTTGGTTGAAAACACGTTCCGGG
65 GGGTCAATTTTTATCCGAAATCGTGTACTAACCATCACGATT-TTGGCTGAAAACACGTT-----
* * *
168754 GCCGGGGCCCCGGCTAAGTTTTGCATGATTTTTGGCCCCAAGACTCATTGAATTAT-CTATATTA
124 -CCGGGGCCCCGGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCATTGAATTATCCT-TATTC
* * * * *
168818 AACATCCCAAATCTCAGCCACCTTAGATTTAAGGATTTAATTTTACGAGCATTTAAATCATATTT
187 ATCATCCCAAATCTCAGCCACATTGGATTTAAGGATTTGATTTTACGAGCATTTGAATCATATTT
* *
168883 CGATCTAATCGGAAATTAATTCGGAAAAT-AAAAAATGATATTAGAAGCGTGGAAAGCCCTTCAA
252 CGATTTAATCGGAAATTAATTCGGAAAATAAAAAAATGATATTAGAAGCGTGCAAAGCCCTTCAA
168947 TC
317 TC
* * * * *
168949 TTTTTGGAGTTGAATTATACACTTTTTATCAGTATTGTGGTTAAAAATTGAGGAAAAATATTTCG
1 TTTTTGGAGTTGAATTATATATTTTTTATGAGTATTGCGGTTAAAAATTGAGGAAAAATCTTTCG
169014 GGTCAATTTTT
66 GGTCAATTTTT
169025 GCAAAATTTT
Statistics
Matches: 1785, Mismatches: 193, Indels: 139
0.84 0.09 0.07
Matches are distributed among these distances:
318 57 0.03
319 41 0.02
320 33 0.02
321 53 0.03
322 98 0.05
323 238 0.13
324 154 0.09
325 133 0.07
326 20 0.01
328 4 0.00
329 54 0.03
330 177 0.10
331 179 0.10
332 217 0.12
333 201 0.11
334 33 0.02
335 2 0.00
336 91 0.05
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (318 bp):
TTTTTGGAGTTGAATTATATATTTTTTATGAGTATTGCGGTTAAAAATTGAGGAAAAATCTTTCG
GGTCAATTTTTATCCGAAATCGTGTACTAACCATCACGATTTTGGCTGAAAACACGTTCCGGGGC
CCCGGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCATTGAATTATCCTTATTCATCATCCCA
AATCTCAGCCACATTGGATTTAAGGATTTGATTTTACGAGCATTTGAATCATATTTCGATTTAAT
CGGAAATTAATTCGGAAAATAAAAAAATGATATTAGAAGCGTGCAAAGCCCTTCAATC
Found at i:169075 original size:652 final size:651
Alignment explanation
Indices: 162943--169076 Score: 3237
Period size: 665 Copynumber: 9.3 Consensus size: 651
162933 GAAAAAAAAG
* *
162943 AAAAATGATATTAGAAGCGTG-ATAAGCCATTCAATCTTTTTGGCA-TTGAGTTATATATTTTTT
1 AAAAATGATATTAGAAGCGTGCA-AAGCCCTTCAATCTTTTTGG-AGTTGAATTATATA-TTTTT
* * * *
163006 AT-GAGTATTGTAGG-CAAAAATTGA-GAAGAAATTTTTCAGGTCAATTTTTGCAAAATT-TTAG
63 ATCGAGTATTG-CGGTTAAAAATTGAGGAA-AAATCTTTCGGGTCAATTTTTGCAAAATTATT-G
* * ** * * *
163067 CCGAAATCGTGTACGCT-A-CATCAC-AGTTTTTGACTGAAAAC-AATT-TATGGGTCCTCGGTT
125 CCGAAATCGTGTA--CTAACCATCACGA-TTTTCGGCTGAAAACGCGTTCCA-GGG-CCCCGGCT
** * * * *
163127 TTGTTTTGCATGATTTTTGGCGCCAAGTCTCTTTGAATTAT-TAATATTCATC-TAACCAAATCT
185 CAGTTTTGCATGATTTTTGGCGCCAAGACTCATTGAATTATCT-CTATTCATCAT-CCCAAATCT
** * * * ** * **
163190 CTTCCACATTGGAGTTAAGGATTTGTTTTTATGAATATCTGAA-C-TGTGCTTCGATTTAATTAG
248 CAGCCACATTGGATTTAAGGATTTGATTTTACGAGCATTTGAATCATGT--TTCGATTTAATCGG
* * ** ** * ** * *
163253 AAATTAATTCAGAAAAAATATGAAAAACGATATTAGAAGTAT-GAAAAGCCCTTCAATATTTTTG
311 AAATTAATTCGGAAAAATTAAAAAAAAATATCTTAGAAGCGTGGAAAA-CCCTTCAATCTATTTG
* * * * * * * ** *
163317 GCGTTGAATTATAAATATTTTATGAGTACTGTGGCTAAAAATTGAGTGAAAAA-CTTTAGATTAA
375 GCATTGAATTATATATTTTTTATGAGTATTGCGGTTAAAAATTGAG-GAAAAATCTTTCGGGTCA
* * * * * *
163381 ATTTTTGCAAAAATTTAACCGAAATTGTGTACGAACCATCACGATTTTTTGGCTAAAAACAAGTT
439 A---TT-------TTT-ACCGAAATCGTGTACTAACTATCACGA--TTTTGGTTGAAAACACGTT
* * * * * *
163446 --CTGGGG-CCCGACTCAGTTTTGTATGATTTTTGGCGCCAGGATTCATTGAAATAT-CTATACT
491 CGCCGGGGCCCCGGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCATTGAATTATCCT-TA-T
* * * * * * * * * * ***
163507 T-GTC-TAACAAAATCTCAGCCACATTGGATTTAAGAATTTGTTTTTACGAACATCTCAATCCGG
554 TCATCAT-CCCAAATCTCAGCCACCTTGTATTTAAGGATTTGATTTTACGAGCATTTGAATCATA
**
163570 TTTCAATTTAATTAGAAATTAATTCGGAAAAAAATAGA
618 TTTCAATTTAATCGGAAATTAATTCGG---AAAATA-A
* * ** * **
163608 AAAAACGATATTAGAAGCGTGAAAAGTACTTCAATCTCTTTGCCGTT-ATATTATATATATTTTA
1 AAAAATGATATTAGAAGCGTGCAAAGCCCTTCAATCTTTTTGGAGTTGA-ATTATATAT-TTTTA
* * * * * *
163672 T-GAGTATTGTGGCTAAAAATTGAGGGAAAAA-CCTTC-AGTTAATTTTTCGCAAAAATT-TAGC
64 TCGAGTATTGCGGTTAAAAATTGA-GGAAAAATCTTTCGGGTCAATTTTT-GC-AAAATTATTGC
* * * * * *** *
163733 TGAAATCGTGTACTAACCATCATGGTTTGTTGG-TAAAAACGCGTTATGGGGCCCCGGCTCAGTC
126 CGAAATCGTGTACTAACCATCACGATTT-TCGGCTGAAAACGCGTTCCAGGGCCCCGGCTCAGTT
* * * * * *** * **
163797 TTCCATGATTTTTGGCGCCAAGAATAATTGAAATATCTATATTCATC-TAAAGAAATCTAAGGTA
190 TTGCATGATTTTTGGCGCCAAGACTCATTGAATTATCTCTATTCATCAT-CCCAAATCTCAGCCA
* * * * * * ** ** *
163861 TATTGGATTTAAGGTTTTGTTTTTACAAGCATCTCAATCCGGTTTCGATTTAATTAGAAATTAAA
254 CATTGGATTTAAGGATTTGATTTTACGAGCATTTGAATCATGTTTCGATTTAATCGGAAATTAAT
* * ** * * * *
163926 TCGGAAAAAAATAAGAAAAACGATATTAGAAGTGTGTAAAACCCTTCAATCT-TTTAGGCGTTGA
319 TCGG-AAAAATTAAAAAAAAATATCTTAGAAGCGTGGAAAACCCTTCAATCTATTT-GGCATTGA
* * ** * * * * * *
163990 GTTATATATTTTTTATGAGTATTGTGGCAAAAAATTAAGGAGAACTGTGTCCGGTCAATTTTTCC
382 ATTATATATTTTTTATGAGTATTGCGGTTAAAAATTGAGGAAAAATCTTTCGGGTCAA---TT--
* * ** * * * *
164055 AAAATTTCAACCGAAATCGTGTACTAACCATCACAATTTTTGACTAAAAACGCGTT--CTGAGGC
442 ----TTT--ACCGAAATCGTGTACTAACTATCACGA-TTTTGGTTGAAAACACGTTCGCCGGGGC
* * * ** *
164118 CCAGACTCTGTTTTGCATGATTTTTGGCGCCAACTCTCATTG-A-TA-CATTTATATCCATC-TA
500 CCCGGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCATTGAATTATC-CTTAT-T-CATCAT-
* * ** * * * * * *
164179 ACCAAACCTCA-CCAACAATGGATTTAAGGATATGTTTTTACGAGCATCTGAATCATGTTTCGAT
561 CCCAAATCTCAGCC-ACCTTGTATTTAAGGATTTGATTTTACGAGCATTTGAATCATATTTCAAT
** *
164243 TTAATTAGAAATTAATTCGGAAAAATAGG
625 TTAATCGGAAATTAATTCGG-AAAATA-A
* * * * * * *
164272 AAAACTGATATAAGAAGCGTGAAAAACCTTTCAATCTTTTTGGCGTT-AGATTATATA-TCTTAT
1 AAAAATGATATTAGAAGCGTGCAAAGCCCTTCAATCTTTTTGGAGTTGA-ATTATATATTTTTAT
* * *** * ** * *
164335 ACGAGTATCGTGACCAAAAATTGAGG-AAAATAATTTCAAGTAAATTTTAGCAAAATT-TTAGCC
65 -CGAGTATTGCGGTTAAAAATTGAGGAAAAAT-CTTTCGGGTCAATTTTTGCAAAATTATT-GCC
* * * * * *
164398 AAAATCGTGTACTAACCATCACGGGTTTT-GGCTAAAAACACGTTAC-GGGGCCCGAGCTCAGTT
127 GAAATCGTGTACTAACCATCAC-GATTTTCGGCTGAAAACGCGTTCCAGGGCCCCG-GCTCAGTT
* * * * * * * * **
164461 TTGCATGATTTTTGGCGCTAAGACTCCTTCAAATATCTATATTCA-CCTAACTAAATCTCTTCCA
190 TTGCATGATTTTTGGCGCCAAGACTCATTGAATTATCTCTATTCATCAT-CCCAAATCTCAGCCA
* ** ** * ** **
164525 CATTGGTTTTAAGGATTTTTTTTTTACGAATATCTGAATTTTGTTTCGATTTAATAAGAAATTAA
254 CATTGGATTTAAGGA-TTTGATTTTACGAGCATTTGAATCATGTTTCGATTTAATCGGAAATTAA
* ** * ** * * * *
164590 TTCGGAAAAAAATATGAGAAACGATATTAGAAGCGT-GAAAAGCCTTTCAGTCTTTTTGG-AGTT
318 TTCGG-AAAAATTAAAAAAAAATATCTTAGAAGCGTGGAAAA-CCCTTCAATCTATTTGGCA-TT
* * *** * *
164653 GAATTATATATTTCTTATGAGTATTGTGACCAAAAATTGAGGAAAATTCTTTCGGGTAAATTTTT
380 GAATTATATATTTTTTATGAGTATTGCGGTTAAAAATTGAGGAAAAATCTTTCGGGTCAATTTTT
* * * * * * *** * * * ***
164718 GCCAAAATCGTGTAATCACCATCACAGTTTTTTACTAAAAACGCGTT--TCGGGGCTTTGGCTCA
445 ACCGAAATCGTGTACTAACTATCAC-GATTTTGGTTGAAAACACGTTCGCCGGGGCCCCGGCTCA
* * * * * *
164781 GTTTTCCATGATTTTTGGCACCAAGACTAATTGAAATAT-CTATATTCATC-TAACAAAATCTCA
509 GTTTTGCATGATTTTTGGCGCCAAGACTCATTGAATTATCCT-TATTCATCAT-CCCAAATCTCA
* ** * * *** ** * ***
164844 GCTA--TATGTGATTTAAGTTTTTGTTTTTACGAGCATTTCAATCCGGTTTTGATTTGATTACAA
572 GCCACCT-TGT-ATTTAAGGATTTGATTTTACGAGCATTTGAATCATATTTCAATTTAATCGGAA
*
164907 ATTAATTCGGGGGAAAAAAAGA
635 ATTAATTC---GG-AAAATA-A
* * * * *
164929 AAAAACGATATTAGAAGCGTG-AGAAGCCCTTCATTCATTTTGGTGTTGAGTTATATATTTTTTA
1 AAAAATGATATTAGAAGCGTGCA-AAGCCCTTCAATCTTTTTGGAGTTGAATTATATA-TTTTTA
* *** ** * * * * * *
164993 T-AAGTATCATGGCCAAAAATTGATGAGAAATGTTTTGGGTCTATATTTGCAAAATT-TTAGCCG
64 TCGAGTATTGCGGTTAAAAATTGAGGAAAAATCTTTCGGGTCAATTTTTGCAAAATTATT-GCCG
* * * * * * *
165056 AAATCGTGTA-T----GTCACGGTCTTT-GACTAAAAACGCGTTCCCGGGTCCCTGACTCAGTTT
128 AAATCGTGTACTAACCATCACGAT-TTTCGGCTGAAAACGCGTTCCAGGG-CCCCGGCTCAGTTT
* * * * * * * *
165115 TGCATGATTTTTGGCACCAAGTCTCATTG-ATATATTTATATCCAT-ATAACCAAACCTCACCCA
191 TGCATGATTTTTGGCGCCAAGACTCATTGAAT-TATCTCTATTCATCAT-CCCAAATCTCAGCCA
* * * * *
165178 CAATGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTTGATTTAATTGGAAATTAAT
254 CATTGGATTTAAGGATTTGATTTTACGAGCATTTGAATCATGTTTCGATTTAATCGGAAATTAAT
* * *** * * *
165243 TCAGAAAAATGGGAAAACCGAA-A--TTAGAAGCAT-GAAAAGCCTTTCAATCTTTTTGG-AGTT
319 TCGGAAAAAT--TAAAAAAAAATATCTTAGAAGCGTGGAAAA-CCCTTCAATCTATTTGGCA-TT
***** * ** * *
165303 GAATTATATATTTTTTATGAGTATTGTAACCAAAAATTGAGGATATTTATTTCGGGTAAATTTTT
380 GAATTATATATTTTTTATGAGTATTGCGGTTAAAAATTGAGGAAAAATCTTTCGGGTCAA----T
* * ** *
165368 GTAAAATTTAGCCAAAATCGTGTACGT---TATCACGGGGTTTTTTTTGCTAAAA-ATGCATT--
441 -T----TTTA-CCGAAATCGTGTAC-TAACTATCAC--GATTTTGGTTG--AAAACA--CGTTCG
* * * * *
165427 CCGGGGCCCCGACTCAATTTTTG-ATGACTTTTGGCGACAAGACTCATTGAAATAT-CTATATTC
493 CCGGGGCCCCGGCTC-AGTTTTGCATGATTTTTGGCGCCAAGACTCATTGAATTATCCT-TATTC
* * * * ** * * * ***
165490 AT-TTAACGAAATCTCAGCTATATT-TGATTTAA-GATTTTGTTTTTACGAGCATCTCAATCCGG
556 ATCAT-CCCAAATCTCAGCCACCTTGT-ATTTAAGGA-TTTGATTTTACGAGCATTTGAATCATA
* * ***
165552 TTTCGATTTGATTACAAATTAATTCGGAAAA-AA
618 TTTCAATTTAATCGGAAATTAATTCGGAAAATAA
* * * * * *
165585 TAGGAAAAAGAAATTAGAAACGTG-AGAATCCCTTCAATCTTTTTGGCGTTGAGTTATATATTTT
1 -A--AAAATGATATTAGAAGCGTGCA-AAGCCCTTCAATCTTTTTGGAGTTGAATTATATA-TTT
* ** * * *
165649 TTAT-GAGTATTGTGGCAAAAAATTGAGGAGAAATGTTTCGGGTCAATTTTTACAAAATT-TTAG
61 TTATCGAGTATTGCGGTTAAAAATTGAGGAAAAATCTTTCGGGTCAATTTTTGCAAAATTATT-G
* * *** * * * * * *
165712 TCGAAATCGTGTACAAACCATCACGATTTT-TAATTAGAAACGCATTCCGGGGCCCTGACTCTGT
125 CCGAAATCGTGTACTAACCATCACGATTTTCGGCTGA-AAACGCGTTCCAGGGCCCCGGCTCAGT
* * * * * *
165776 TTTGCATAGATTTTTGGCGCCAAGTCTCATTG-ATATATCTATATCCATC-TAACCAAACCTCAC
189 TTTGCAT-GATTTTTGGCGCCAAGACTCATTGAAT-TATCTCTATTCATCAT-CCCAAATCTCAG
* ** * * * ** *
165839 CCACAATGGATTTAAGGATTTCTTTTTACGAGAATCTGAATCATGTTTCAATTTAATTAGAATTT
251 CCACATTGGATTTAAGGATTTGATTTTACGAGCATTTGAATCATGTTTCGATTTAATCGGAAATT
* ** *** ** * * *
165904 AATTTGGAAAAA-TAGGAAAACCGAAATTAGAAGCAT-GAAAATCCTTTCAATCTTTTTGG-AGT
316 AATTCGGAAAAATTAAAAAAAAATATCTTAGAAGCGTGGAAAA-CCCTTCAATCTATTTGGCA-T
* ***** * **
165966 TGAATTATATATTTTTAATGAGTATTGTAACCAAAAATTGAGGAAAACTAATTCGGGTAAATTTT
379 TGAATTATATATTTTTTATGAGTATTGCGGTTAAAAATTGAGGAAAAATCTTTCGGG--------
* * * * * * * *
166031 TGCAAAATTTTAGCCAAAATCGTGTACTAACCATCACGGTTTTTTGCTT-AAAACGCATT--CTG
436 T-C-AATTTTTA-CCGAAATCGTGTACTAACTATCAC-G-ATTTTGGTTGAAAACACGTTCGCCG
* * * * * ** * ** *
166093 GGGCCGCGGGTCAATTTTCCATGAATTTTGGCATCAAGACTCTTTGAAACAT-CTATATTCAT-T
496 GGGCCCCGGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCATTGAATTATCCT-TATTCATCA
* * * * ** * * * * *** *
166156 TAACGATATCTCAGCTATATTTTATTTAAGGTTTTG-TCTTTACGAGCATATCAATCCGGTTTCG
560 T-CCCAAATCTCAGCCACCTTGTATTTAAGGATTTGAT-TTTACGAGCATTTGAATCATATTTCA
* *** *
166220 ATTTGATTACAAATTAATTCGGAAAAAATAGC
623 ATTTAATCGGAAATTAATTCGG--AAAATA-A
* * ** *
166252 AAAAACGATATTAGAAGCGTG-AGAAGCCCTTCAATCATTTTGGCCTTGAGTTATATATTTTTTA
1 AAAAATGATATTAGAAGCGTGCA-AAGCCCTTCAATCTTTTTGGAGTTGAATTATATA-TTTTTA
* *** ** * * * ** * *
166316 T-GAGTGTCATGGCCAAAAATTGATGAGAAATGTTTCGTATCATTTTTTACAAAATT-TTAGCCG
64 TCGAGTATTGCGGTTAAAAATTGAGGAAAAATCTTTCGGGTCAATTTTTGCAAAATTATT-GCCG
* * * * *
166379 AAATGGTATACATTA-CATCACGATTTTTGGCTGAAAACGCGTTCCGGGGCCCCGGCTCAGTTTT
128 AAATCGTGTAC-TAACCATCACGATTTTCGGCTGAAAACGCGTTCCAGGGCCCCGGCTCAGTTTT
* * * *
166443 GCATAATTTTTAGCGCCAAGACTCATTGAATTATC-CTTATTCATCATTCCAAATCTCAGCCACG
192 GCATGATTTTTGGCGCCAAGACTCATTGAATTATCTC-TATTCATCATCCCAAATCTCAGCCACA
* * *
166507 TTGGATTTAAGGATTTTATTTTACAAGCATTTGAATCATGTTTCGATTTAATCGAAAATTAATTC
256 TTGGATTTAAGGATTTGATTTTACGAGCATTTGAATCATGTTTCGATTTAATCGGAAATTAATTC
* * * * *
166572 GGAAACATTAAAAAAAAATGATGTTAGAAGCGT-GAAAAGCGCTTCAACCTTTTTGGCATTGAAT
321 GGAAAAATTAAAAAAAAAT-ATCTTAGAAGCGTGGAAAA-CCCTTCAATCTATTTGGCATTGAAT
* * * **** ** * *
166636 TATATATTTTTTACGAGTTTTTCGGGTTGAATTATATATTTTTTTATGAGT-TTTGCGGTTCAAA
384 TATATATTTTTTATGAGTATTGC-GGTT-AA--A-A-A-TTGAGGAAAAATCTTT-CGGGTC-AA
** * * * * * ** * * * * ** **
166700 AATTGA-GGAAAAATCTCTTGGGT-C-AATTTTCGCAAAATTATCGCTGAAATCGTGTACTAACC
440 TTTTTACCG--AAA--TC--GTGTACTAACTAT--CACGATTTTGGTTGAAAACACGT--TCGCC
** * ** * * * * *** ** * *
166762 ---ATCACGATTC--TTGGCTGAAAACGCGTTCCAGG-GCCCCGGCTCAGTTTTGCATGATTTTT
495 GGGGCCCCGGCTCAGTT--TTG--CATG-ATTTTTGGCGCCAAGACTCA---TTG-A--A-TTAT
** * * * * * * * * * *
166821 GGCGCCAAGACTCATTGAAATATCTATATTCATCATCCCAAATCTCAGCCACATT--GGATTTAA
548 ----CC-TTATTCA-T--CAT-CCCA-AATC-TCA-GCC--ACCT-TG-TA-TTTAAGGATTT--
* * *
166884 GGATTTGATTTTACGAGCATTTGAATCATGTTGCGATTTAATCGGAAATTAATTCGG-----AA
594 -GA--T---TTTACGAGCATTTGAATCATATTTCAATTTAATCGGAAATTAATTCGGAAAATAA
* * *
166943 AAAAATGATATTAGAAGCGTGTAAAGCCGTTCAATCTTTTTGGCGTTGAATTATATATTTTCTA-
1 AAAAATGATATTAGAAGCGTGCAAAGCCCTTCAATCTTTTTGGAGTTGAATTATATATTTT-TAT
* *
167007 CGAGTATTTCGGTTAAAAATTGAGGAAAAATCTTTCGGGTCAATTTTTGCAAAATTATCGCCGAA
65 CGAGTATTGCGGTTAAAAATTGAGGAAAAATCTTTCGGGTCAATTTTTGCAAAATTATTGCCGAA
* * *
167072 ATCGTGTACTAAACATCACAATTATCGGCTGAAAACGCGTTCCAGGGCCCCGGCTCAGTTTTGCA
130 ATCGTGTACTAACCATCACGATTTTCGGCTGAAAACGCGTTCCAGGGCCCCGGCTCAGTTTTGCA
* *
167137 TGATATTTGGCGCCAAGACTCATTGAATTATCCTATATTCATCATCCCAAATCTCAGCCACATTG
195 TGATTTTTGGCGCCAAGACTCATTGAATTAT-CTCTATTCATCATCCCAAATCTCAGCCACATTG
*
167202 GATTTAAGGATTTGATTTTACGAGCATTTGAATCATGTTTCGATTAAATCGGAAATTAATTCGGA
259 GATTTAAGGATTTGATTTTACGAGCATTTGAATCATGTTTCGATTTAATCGGAAATTAATTCGGA
* *
167267 AAAAGTTAAAAAAAATTATATATTAGAAGCGTGGAAAACCCTTCAATCTATTTGGCGTTGAATTA
324 AAAA-TTAAAAAAAA--ATATCTTAGAAGCGTGGAAAACCCTTCAATCTATTTGGCATTGAATTA
* * *
167332 TATATTTTTTATGATTATTGCGGTTAAAAACTGAGGAAAAATCTTTCGGGTCAATTTTTGCCGAA
386 TATATTTTTTATGAGTATTGCGGTTAAAAATTGAGGAAAAATCTTTCGGGTCAATTTTTACCGAA
* * * *
167397 ATCGTGTACGT---TATCACGATTTTTGGCTAAAAACGCGTT--CCGGGGCCCCGACTCAGTTTT
451 ATCGTGTAC-TAACTATCACGA-TTTTGGTTGAAAACACGTTCGCCGGGGCCCCGGCTCAGTTTT
* * * *
167457 CCATGATTTTTGGTGCCAAGACTCATTGAATTATCCTTATTCATCATTCCAAATCTCAGCCACGT
514 GCATGATTTTTGGCGCCAAGACTCATTGAATTATCCTTATTCATCATCCCAAATCTCAGCCACCT
167522 TGTATTTAAGGATTTGATTTTACGAGCATTTGAATCATATTTCAATTTAATCGGAAATTAATTCG
579 TGTATTTAAGGATTTGATTTTACGAGCATTTGAATCATATTTCAATTTAATCGGAAATTAATTCG
167587 GAAACATTAA
644 GAAA-A-TAA
** *
167597 AATAAATGATATTAGAAGCGTGCAAAGCGTTTCAATC-TTTTGGAGTTGAATTATATATTTTTTT
1 AA-AAATGATATTAGAAGCGTGCAAAGCCCTTCAATCTTTTTGGAGTTGAATTATATATTTTTAT
* * * * *
167661 ACGAGTTTTGCGGTTTAAAAATTGAGGAAATATCTCTCGGGTAAATTTTTGCAAAATTATTGCCT
65 -CGAGTATTGCGG-TTAAAAATTGAGGAAAAATCTTTCGGGTCAATTTTTGCAAAATTATTGCCG
* * *
167726 AAATCGTGTACTAACCATCACGATTTTCGGCTGAAAACGCGTTCCGGGGCCCCGGCTAAGCTTTG
128 AAATCGTGTACTAACCATCACGATTTTCGGCTGAAAACGCGTTCCAGGGCCCCGGCTCAGTTTTG
* * * * *
167791 CGTGATTTTTGGCGCCAAGACTCATTGAATTATC-CTTATTCATCATTCAAAATCTTAGCCACGT
193 CATGATTTTTGGCGCCAAGACTCATTGAATTATCTC-TATTCATCATCCCAAATCTCAGCCACAT
* * * *
167855 TGGATTTAAGGATTT-AGTTTTGCAAGCATCTGAATCATGTTACGATTTAATCGGAAATTAATTC
257 TGGATTTAAGGATTTGA-TTTTACGAGCATTTGAATCATGTTTCGATTTAATCGGAAATTAATTC
** * * *
167919 ATAAAAATTAAAAAAAATTATAC-TAGAAGGGTGGAAAACCCTTCAATCTATTTGTCATTGAATT
321 GGAAAAATTAAAAAAAAATAT-CTTAGAAGCGTGGAAAACCCTTCAATCTATTTGGCATTGAATT
*
167983 ATATATTTTTTATGAGTATTGTGGTTAAAAATTGAGGAAAAATCTTTCGGGTCAATTTTTGCAAA
385 ATATATTTTTTATGAGTATTGCGGTTAAAAATTGAGGAAAAATCTTTCGGGTCAATTTTT-----
* * *
168048 ATTTTTGCCGAAATCTTGTACTAACCATCACGATTTTCGGTTGAAAACGCGTT--CCGGGGCCCC
445 A------CCGAAATCGTGTACTAACTATCACGATTTT-GGTTGAAAACACGTTCGCCGGGGCCCC
* *
168111 AGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCATTGAATTATCCTTATTCATCATTCCAAAT
503 GGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCATTGAATTATCCTTATTCATCATCCCAAAT
* *
168176 CTCAGTCACGC-TGTATTTAAGGATTTGATTTTATGAGCATTTGAATCATATTTCAATTTAATCG
568 CTCAGCCAC-CTTGTATTTAAGGATTTGATTTTACGAGCATTTGAATCATATTTCAATTTAATCG
*
168240 GAAATTAATTCAGAAAAATAA
632 GAAATTAATTC-GGAAAATAA
* *
168261 AAAAATGATATTAGAAGCGTGCAAAGCCCTTCAATCTTTTTGGCA-TTGAATTATATAATTTTAC
1 AAAAATGATATTAGAAGCGTGCAAAGCCCTTCAATCTTTTTGG-AGTTGAATTATATATTTTTAT
* * * *
168325 CGAGTATTGCGGTTAAAAATTGGGGAAAAATCTGTCGGATCAATTTTTGCAAAATTTTTGCCGAA
65 CGAGTATTGCGGTTAAAAATTGAGGAAAAATCTTTCGGGTCAATTTTTGCAAAATTATTGCCGAA
* * * ** * *
168390 ATCGTGTGCTATCCATCACGATTCTT-GGCTGAAAACGTGTTGTAGGGCCCCGTCTCATTTTTGC
130 ATCGTGTACTAACCATCACGATT-TTCGGCTGAAAACGCGTTCCAGGGCCCCGGCTCAGTTTTGC
* * * * *
168454 ATGCTTTTTTTGCGCCAAGACTTACTGAAATATCTCTATTCATCATCCCAAATCTCAGCCACATT
194 ATG-ATTTTTGGCGCCAAGACTCATTGAATTATCTCTATTCATCATCCCAAATCTCAGCCACATT
* * *
168519 GGATTTAAGGATTTGATTTTACGAGCATTTGAATCATATTTCAATTTAATCGGAAATTAATTTGG
258 GGATTTAAGGATTTGATTTTACGAGCATTTGAATCATGTTTCGATTTAATCGGAAATTAATTCGG
** * * * *
168584 AAAAA-T-AAAAAAACGATCTTAGAAGCGTGCAAAGCCCTTTAATCTTTTTGGCATTGAA-T-TA
323 AAAAATTAAAAAAAAATATCTTAGAAGCGTGGAAAACCCTTCAATCTATTTGGCATTGAATTATA
* *
168645 TATTTTTTATGAGTATTGCGGTTAAAAATTGGGGAAATATCTTTCGGGTCAATTTTTACCGAAAT
388 TATTTTTTATGAGTATTGCGGTTAAAAATTGAGGAAAAATCTTTCGGGTCAATTTTTACCGAAAT
* * *
168710 CGTGTTCTAACTATCACAATTCTTGGTTGAAAACACGTTCCGGGGCCGGGGCCCCGGCTAAGTTT
453 CGTGTACTAACTATCACGATT-TTGGTTGAAAACACGTT-C---GCCGGGGCCCCGGCTCAGTTT
* * *
168775 TGCATGATTTTTGGCCCCAAGACTCATTGAATTAT-CTATATTAAACATCCCAAATCTCAGCCAC
513 TGCATGATTTTTGGCGCCAAGACTCATTGAATTATCCT-TATTCATCATCCCAAATCTCAGCCAC
* * * *
168839 CTTAG-ATTTAAGGATTTAATTTTACGAGCATTTAAATCATATTTCGATCTAATCGGAAATTAAT
577 CTT-GTATTTAAGGATTTGATTTTACGAGCATTTGAATCATATTTCAATTTAATCGGAAATTAAT
168903 TCGGAAAAT-A
641 TCGGAAAATAA
* *
168913 AAAAATGATATTAGAAGCGTGGAAAGCCCTTCAATCTTTTTGGAGTTGAATTATACACTTTTTAT
1 AAAAATGATATTAGAAGCGTGCAAAGCCCTTCAATCTTTTTGGAGTTGAATTATATA-TTTTTAT
* * * *
168978 C-AGTATTGTGGTTAAAAATTGAGGAAAAATATTTCGGGTCAATTTTTGCAAAATTTTTGCCAAA
65 CGAGTATTGCGGTTAAAAATTGAGGAAAAATCTTTCGGGTCAATTTTTGCAAAATTATTGCCGAA
* * *
169042 ATCTTGTACTAACCATCATGATTTTCAGCTGAAAA
130 ATCGTGTACTAACCATCACGATTTTCGGCTGAAAA
Statistics
Matches: 4439, Mismatches: 762, Indels: 549
0.77 0.13 0.10
Matches are distributed among these distances:
647 45 0.01
648 38 0.01
649 2 0.00
650 91 0.02
651 11 0.00
652 306 0.07
653 94 0.02
654 317 0.07
655 141 0.03
656 149 0.03
657 108 0.02
658 16 0.00
659 195 0.04
660 18 0.00
661 52 0.01
662 246 0.06
663 464 0.10
664 646 0.15
665 656 0.15
666 266 0.06
667 34 0.01
668 1 0.00
669 9 0.00
670 8 0.00
671 4 0.00
672 12 0.00
673 2 0.00
674 5 0.00
675 1 0.00
676 7 0.00
677 10 0.00
678 1 0.00
679 10 0.00
680 13 0.00
681 12 0.00
682 2 0.00
683 2 0.00
685 7 0.00
686 6 0.00
687 13 0.00
688 5 0.00
689 1 0.00
690 10 0.00
691 188 0.04
692 99 0.02
693 16 0.00
694 53 0.01
695 7 0.00
697 1 0.00
699 39 0.01
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (651 bp):
AAAAATGATATTAGAAGCGTGCAAAGCCCTTCAATCTTTTTGGAGTTGAATTATATATTTTTATC
GAGTATTGCGGTTAAAAATTGAGGAAAAATCTTTCGGGTCAATTTTTGCAAAATTATTGCCGAAA
TCGTGTACTAACCATCACGATTTTCGGCTGAAAACGCGTTCCAGGGCCCCGGCTCAGTTTTGCAT
GATTTTTGGCGCCAAGACTCATTGAATTATCTCTATTCATCATCCCAAATCTCAGCCACATTGGA
TTTAAGGATTTGATTTTACGAGCATTTGAATCATGTTTCGATTTAATCGGAAATTAATTCGGAAA
AATTAAAAAAAAATATCTTAGAAGCGTGGAAAACCCTTCAATCTATTTGGCATTGAATTATATAT
TTTTTATGAGTATTGCGGTTAAAAATTGAGGAAAAATCTTTCGGGTCAATTTTTACCGAAATCGT
GTACTAACTATCACGATTTTGGTTGAAAACACGTTCGCCGGGGCCCCGGCTCAGTTTTGCATGAT
TTTTGGCGCCAAGACTCATTGAATTATCCTTATTCATCATCCCAAATCTCAGCCACCTTGTATTT
AAGGATTTGATTTTACGAGCATTTGAATCATATTTCAATTTAATCGGAAATTAATTCGGAAAATA
A
Done.