Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014572.1 Corchorus olitorius cultivar O-4 contig14605, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78481

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14--3860
666
5.8
660
86
3
5030
30
15
17
35
1.92
37--3860
998
3.8
994
87
3
5174
30
15
17
35
1.91
14--3860
330
11.6
330
87
3
4970
30
15
17
35
1.92
16552--16583
16
2.0
16
100
0
64
12
12
31
43
1.80
20607--20633
9
3.0
9
100
0
54
0
11
33
55
1.35
24474--24499
5
5.2
5
100
0
52
57
19
23
0
1.40
42031--42067
2
18.5
2
100
0
74
51
0
0
48
1.00
42454--42513
19
3.0
21
65
30
58
40
5
21
33
1.75
42931--42994
21
3.2
20
82
8
76
39
12
18
29
1.88
43689--43724
6
6.0
6
86
0
54
50
5
33
11
1.61
43689--43724
18
2.0
18
100
0
72
50
5
33
11
1.61
44499--44526
14
2.0
14
100
0
56
35
28
7
28
1.84
45922--46123
60
3.3
60
86
1
278
33
18
19
28
1.96
46197--46294
29
3.3
29
67
17
85
30
20
15
33
1.93
46164--46325
59
2.7
59
85
4
245
28
19
17
33
1.95
54581--54609
2
14.5
2
100
0
58
51
0
0
48
1.00
58297--58358
30
2.1
30
93
0
106
46
4
22
25
1.71
61998--62034
19
1.9
19
94
0
65
45
13
24
16
1.83
62623--62652
14
2.1
15
93
6
53
20
16
50
13
1.78
70523--70583
27
2.3
27
88
0
86
52
8
4
34
1.53

Tables:   1

The End!