Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014574.1 Corchorus olitorius cultivar O-4 contig14607, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 19284
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34


Found at i:5468 original size:21 final size:19

Alignment explanation


    Indices: 5443--5500  Score: 71
    Period size: 21  Copynumber: 2.9  Consensus size: 19

       5433 GCTGCTCTAA

                                 
       5443 TAATCTCATCTGTACAGTACC
          1 TAATCTCATCTGTACAGT--C

                  *           *
       5464 TAATCTAATCTGTACAGTG
          1 TAATCTCATCTGTACAGTC

                     *        
       5483 TAATCTCATATGTACAGT
          1 TAATCTCATCTGTACAGT

       5501 TGCTAAACAG


Statistics
Matches: 33,  Mismatches: 4, Indels: 2
        0.85            0.10        0.05

Matches are distributed among these distances:
  19   16  0.48
  21   17  0.52

ACGTcount: A:0.31, C:0.21, G:0.12, T:0.36


Consensus pattern (19 bp):   
TAATCTCATCTGTACAGTC
Done.