genome.fa.s14575.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014575.1 Corchorus olitorius cultivar O-4 contig14608, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60225

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5738--5783	20	2.3	20	85	7	67	34	13	32	19	1.90
8450--8569	61	2.0	60	88	1	177	24	15	24	36	1.93
9210--9244	17	2.0	18	88	5	54	82	0	14	2	0.77
16350--16394	3	15.0	3	100	0	90	66	0	33	0	0.92
40382--40411	14	2.1	14	93	0	51	53	6	3	36	1.44
52920--54236	26	52.0	25	91	4	1904	27	12	27	33	1.92
52920--54334	51	27.7	50	89	6	1942	27	12	27	33	1.92
53724--53763	19	2.1	19	95	0	71	25	10	35	30	1.88
54200--54272	36	2.0	36	97	0	137	23	10	28	36	1.89
54176--54302	61	2.1	61	86	4	186	25	11	25	36	1.91
54156--54323	86	1.9	86	85	8	234	25	12	26	35	1.92
54236--54346	25	4.3	26	85	3	154	24	11	30	33	1.91
54344--58066	332	11.4	329	77	7	3412	33	13	16	36	1.88
55705--58053	656	3.6	660	85	4	2869	33	13	16	35	1.89
58900--58939	20	2.0	20	95	0	71	50	7	15	27	1.70
59663--59726	10	6.4	10	74	13	60	48	12	37	1	1.51
59605--59679	39	1.9	39	86	5	107	46	21	25	6	1.75
59695--59936	62	3.6	62	69	23	204	37	20	39	2	1.67
59718--59874	78	2.0	78	97	0	296	36	19	40	2	1.66
59695--60005	140	2.2	140	99	0	613	36	20	39	2	1.67
59739--59977	78	3.1	78	81	13	223	35	20	41	2	1.66
59799--59953	62	2.5	60	88	6	179	36	20	40	2	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59858--60006	78	1.9	78	97	0	280	36	20	40	2	1.66
59978--60067	34	2.6	34	100	0	180	46	18	31	3	1.65
60171--60225	2	27.0	2	96	3	101	49	0	49	1	1.11

Tables:   1

The End!