Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014576.1 Corchorus olitorius cultivar O-4 contig14609, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  151068

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
715--822
45
2.4
45
84
1
119
35
15
25
23
1.94
738--838
45
2.2
45
91
0
166
28
20
24
25
1.99
949--975
3
9.0
3
100
0
54
66
0
33
0
0.92
6609--6649
1
41.0
1
100
0
82
100
0
0
0
0.00
17168--17202
18
2.0
17
94
5
61
68
0
0
31
0.90
19827--19887
30
2.0
30
93
0
104
47
3
22
26
1.67
20606--20736
66
2.0
66
84
3
174
19
27
25
26
1.99
22280--22343
32
2.1
31
82
11
78
26
10
10
51
1.70
23836--23880
3
15.0
3
85
0
63
4
2
28
64
1.25
23840--23880
15
2.7
15
92
0
73
4
2
26
65
1.25
29812--30237
162
2.6
162
86
1
550
29
20
23
26
1.99
30965--31032
29
2.3
31
85
10
88
35
10
20
33
1.87
41498--41536
13
3.0
13
92
0
60
2
48
15
33
1.58
63914--63965
23
2.4
22
81
15
63
59
0
0
40
0.97
64242--64303
30
2.1
30
93
0
106
25
22
4
46
1.71
65555--65631
29
2.6
29
78
10
93
16
9
24
49
1.75
69584--69618
18
1.9
18
94
0
61
34
17
0
48
1.47
72055--72079
9
2.8
9
100
0
50
84
16
0
0
0.63
79245--79303
19
3.0
19
79
18
75
37
8
22
32
1.84
79350--79386
19
1.9
19
88
0
56
48
13
21
16
1.80
88296--88346
17
3.1
16
86
8
66
35
21
21
21
1.96
92412--92464
16
3.2
17
76
5
56
0
7
18
73
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96216--96252
18
2.1
18
89
0
56
54
35
8
2
1.44
113218--113304
31
2.8
31
83
0
111
40
19
6
33
1.78
115598--116057
246
1.9
246
89
0
715
33
20
15
31
1.94
119375--119432
19
2.9
20
79
5
64
31
18
10
39
1.85
149006--150713
336
5.1
333
88
3
2355
31
17
16
34
1.93
149006--150713
669
2.5
666
87
4
2411
31
17
16
34
1.93

Tables:   1

The End!