Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014577.1 Corchorus olitorius cultivar O-4 contig14610, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 18757
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.34


Found at i:16901 original size:21 final size:22

Alignment explanation


    Indices: 16875--16924  Score: 66
    Period size: 25  Copynumber: 2.2  Consensus size: 22

      16865 ATATTTTGCC

                                  
      16875 TTTTTTAT-TTTCTTAATTATT
          1 TTTTTTATATTTCTTAATTATT

                                     
      16896 TTTTTTATAACATTTCTTAATTATT
          1 TTTTTTAT---ATTTCTTAATTATT

                
      16921 TTTT
          1 TTTT

      16925 GGTTTAGAAG


Statistics
Matches: 25,  Mismatches: 0, Indels: 4
        0.86            0.00        0.14

Matches are distributed among these distances:
  21    8  0.32
  25   17  0.68

ACGTcount: A:0.22, C:0.06, G:0.00, T:0.72


Consensus pattern (22 bp):   
TTTTTTATATTTCTTAATTATT
Done.