Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01014579.1 Corchorus olitorius cultivar O-4 contig14612, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51830
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Found at i:7183 original size:2 final size:2
Alignment explanation
Indices: 7178--7209 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7168 AGGGAGCCCC
7178 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7210 TCTCTTTACC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:11516 original size:25 final size:24
Alignment explanation
Indices: 11480--11526 Score: 85
Period size: 25 Copynumber: 1.9 Consensus size: 24
11470 AATACTTACA
11480 TTAATTAAATTCTTAGGTATTTTT
1 TTAATTAAATTCTTAGGTATTTTT
11504 TTAATTCAAATTCTTAGGTATTT
1 TTAATT-AAATTCTTAGGTATTT
11527 GTGCAAACGT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 6 0.27
25 16 0.73
ACGTcount: A:0.30, C:0.06, G:0.09, T:0.55
Consensus pattern (24 bp):
TTAATTAAATTCTTAGGTATTTTT
Found at i:17960 original size:33 final size:33
Alignment explanation
Indices: 17922--18004 Score: 141
Period size: 33 Copynumber: 2.5 Consensus size: 33
17912 ACGACCAACC
17922 AAAAGACAGAGATATCCTCTT-TCTAAAAAAAAA
1 AAAAGACAGAGATATCCTCTTAT-TAAAAAAAAA
*
17955 AAAAGACAGAGATATCCTGTTATTAAAAAAAAA
1 AAAAGACAGAGATATCCTCTTATTAAAAAAAAA
17988 AAAAGACAGAGATATCC
1 AAAAGACAGAGATATCC
18005 AAAAGTACGC
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
33 47 0.98
34 1 0.02
ACGTcount: A:0.55, C:0.13, G:0.12, T:0.19
Consensus pattern (33 bp):
AAAAGACAGAGATATCCTCTTATTAAAAAAAAA
Found at i:26918 original size:31 final size:31
Alignment explanation
Indices: 26873--26951 Score: 79
Period size: 30 Copynumber: 2.5 Consensus size: 31
26863 AACTATTGCG
* * * * *
26873 CCAAGGACAATTTGCCCCCTGAATTTCCAACT
1 CCAA-GACATTTTGCCCCATAAACTTCCAAAT
*
26905 TCAAGACATTTTG-CCCATAAACTTCCAAAT
1 CCAAGACATTTTGCCCCATAAACTTCCAAAT
*
26935 CCAAGACATTTTACCCC
1 CCAAGACATTTTGCCCC
26952 TTGATGGAGG
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
30 24 0.63
31 11 0.29
32 3 0.08
ACGTcount: A:0.32, C:0.33, G:0.09, T:0.27
Consensus pattern (31 bp):
CCAAGACATTTTGCCCCATAAACTTCCAAAT
Found at i:33906 original size:32 final size:32
Alignment explanation
Indices: 33861--33958 Score: 160
Period size: 32 Copynumber: 3.1 Consensus size: 32
33851 GTTTCTGTTC
*
33861 TCAAACATTTGTTTCTAGTATTCAATGAGAAT
1 TCAAACATATGTTTCTAGTATTCAATGAGAAT
*
33893 TTAAACATATGTTTCTAGTATTCAATGAGAAT
1 TCAAACATATGTTTCTAGTATTCAATGAGAAT
* *
33925 TCAAACACATGTTTCTAGTATTCATTGAGAAT
1 TCAAACATATGTTTCTAGTATTCAATGAGAAT
33957 TC
1 TC
33959 CTCATGCTGG
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 61 1.00
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (32 bp):
TCAAACATATGTTTCTAGTATTCAATGAGAAT
Found at i:37439 original size:122 final size:127
Alignment explanation
Indices: 37293--37543 Score: 379
Period size: 122 Copynumber: 2.0 Consensus size: 127
37283 CATTATTTAA
*
37293 ACTTTTATAGTTTCACTCAACTAAAAACTCTATTTTTATTTAATTAAATCTAATAT-CTT-TA-T
1 ACTTTTACAGTTTCACTCAACTAAAAACTCTATTTTTATTTAATTAAATCTAATATCCTTATACT
*
37355 A-ATTTTTACCATTTTACTATTTTAATTAAAAAAACTTATATAT-T-AGAATTTTTTAAATAT
66 ATATTTTTACCATTTTAATATTTTAATT-AAAAAACTTATATATATAAGAATTTTTTAAATAT
* *
37415 ACTTTTACAGTTTTATTCAACTAAAAACTCTATTTTTATTTAATTAAATCTAATATCCTTATACC
1 ACTTTTACAGTTTCACTCAACTAAAAACTCTATTTTTATTTAATTAAATCTAATATCCTTATA-C
37480 TATTTTATTTTTACCATTTTAATATTTTAATTAAAAAACTTATATATATAAGAATTTTTTAAAT
65 TA---TATTTTTACCATTTTAATATTTTAATTAAAAAACTTATATATATAAGAATTTTTTAAAT
37544 TTATTTCTTA
Statistics
Matches: 115, Mismatches: 4, Indels: 11
0.88 0.03 0.08
Matches are distributed among these distances:
122 53 0.46
123 3 0.03
124 2 0.02
126 2 0.02
129 15 0.13
130 26 0.23
131 14 0.12
ACGTcount: A:0.38, C:0.11, G:0.02, T:0.49
Consensus pattern (127 bp):
ACTTTTACAGTTTCACTCAACTAAAAACTCTATTTTTATTTAATTAAATCTAATATCCTTATACT
ATATTTTTACCATTTTAATATTTTAATTAAAAAACTTATATATATAAGAATTTTTTAAATAT
Found at i:42479 original size:39 final size:39
Alignment explanation
Indices: 42425--42504 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
42415 CTCGCTGTCC
42425 CTAGCAGACAAGGATCATATCGATGAGCTGAAGTTGGAG
1 CTAGCAGACAAGGATCATATCGATGAGCTGAAGTTGGAG
*
42464 CTAGCAGACAAGGATCATATTGATGAGCTGAAGTTGGAG
1 CTAGCAGACAAGGATCATATCGATGAGCTGAAGTTGGAG
42503 CT
1 CT
42505 GGAAGCAATT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.33, C:0.15, G:0.30, T:0.23
Consensus pattern (39 bp):
CTAGCAGACAAGGATCATATCGATGAGCTGAAGTTGGAG
Found at i:46945 original size:320 final size:322
Alignment explanation
Indices: 45797--47075 Score: 1393
Period size: 320 Copynumber: 4.0 Consensus size: 322
45787 ACGTTGTGGT
* * * * * *
45797 AAAAATTGAGTAAAAATATTTTGGGTCAGTTTTTAGCCGAAATCGTG---T-A-CGTCGC-GATT
1 AAAAATTGAGGAAAAAAATTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAACCATCACAG-TT
* * * * * * *
45856 TTAGGCTAAAAACGTGTTACAGAGCCCGACTCCATTTTGCATGATTTTGGGCGCAAAGATTCCTT
65 TTTGGCTAAAAACGCGTTTCGGAGCCCGACTCAATTTTACATGATTTTGGGCGCAAAGACTCCTT
* * * *
45921 GAAATATCTATATTCATCTAACCAAATCTCAGTCAAATTGGATTTAAGAATTTGCTTTTACGAGC
130 GAAATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGATATAAGGATTTGTTTTTACGAGC
* * *
45986 AACTGAATCTTGTTTCGATTTAATTAGAAATTAATTAGGAAAAAATTTGGAAAAACG---ATT--
195 AACTGAATCTTGTTTCGATTTAAATAGAAATTAATTCGGAAAAAA-TTGGGAAAACGATAATTAG
* * * * *
46046 ----GTGAAAAACCCTTTAATCTTTCTGGCGTAGAATTATATATTTTTTCTGAGTATT-TTGGCA
259 AAGCGTGAAAAACCCGTCAATCTTTTTGGCATTGAATTATATATTTTTTCTGAGTATTGTT-GC-
46106 A
322 A
* *
46107 AAAAATGGAGG-AAAAACTCTTCGGGTCAATTTTTGCAATTTTTTAGCCGAAATCGTGTACTAAC
1 AAAAATTGAGGAAAAAAAT-TTCGGG--------T-CAA-TTTTTAGCCGAAATCGTGTACTAAC
* ***** * * * * * *
46171 AATTTTTTTTTTTCCCGGATAAAAACGCATTTCGTAGTCCGGA-TCAGTTTTTA-ATGATTATGG
55 CATCACAGTTTTT---GGCTAAAAACGCGTTTCGGAG-CCCGACTCA-ATTTTACATGATTTTGG
* * * * *
46234 GCGCAAAGTCTCATTGAAATATCTATATTCATCGAACCAAATCTTAGCCACATTGGATATAAGGA
115 GCGCAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGATATAAGGA
* * * *
46299 TTTGTTTTTACGAGCATCTGAATCTTATTTCGATTTAATTAGAAATTAATTCGGAAAAAAATGGG
180 TTTGTTTTTACGAGCAACTGAATCTTGTTTCGATTTAAATAGAAATTAATTCGGAAAAAATTGGG
* * * * * *
46364 AAAATGATATTTAGAAGCATGAAAATCCTGTCAATCTTTTTGGCATTGAATTGTATATTTTTTCT
245 AAAACGATAATTAGAAGCGTGAAAAACCCGTCAATCTTTTTGGCATTGAATTATATATTTTTTCT
*
46429 AAGTATTGTTGCA
310 GAGTATTGTTGCA
* * *
46442 AAAAATTGA-GAAAAAATTTTTCGGGTTAGTTTTTAGCCGAAATCGTGTACTAACCATCA-AGGT
1 AAAAATTGAGGAAAAAA-ATTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAACCATCACA-GT
* * * *
46505 TTTTGGCTAAAAACGCCTTCCGGAGCCCGACTCAATTTTACATGATTTAGGGCGTAAAGACTCCT
64 TTTTGGCTAAAAACGCGTTTCGGAGCCCGACTCAATTTTACATGATTTTGGGCGCAAAGACTCCT
* * * *
46570 TGAAGTATCTATATTCATTTAACCAAATCTCAGCCATATTCGATATAAGGATTTGTTTTTACGAG
129 TGAAATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGATATAAGGATTTGTTTTTACGAG
* * *
46635 TAACTGAATCTTGTTTCGATTTAAATAAAAATTAATTCGGAAAAAA-TGGGAAAACGATAATTAA
194 CAACTGAATCTTGTTTCGATTTAAATAGAAATTAATTCGGAAAAAATTGGGAAAACGATAATTAG
*
46699 AAGCGTGAAAATCCCGTCAATCTTTTTGGCATTGAATTATATATTTTTTCTGAGTATTGTTGCA
259 AAGCGTGAAAAACCCGTCAATCTTTTTGGCATTGAATTATATATTTTTTCTGAGTATTGTTGCA
*
46763 AAAAATTGAGGAAAAAAATTTCCGGTCAATTTTTAGCCGAAATCGTGTACT-ACCATCACAGTTT
1 AAAAATTGAGGAAAAAAATTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAACCATCACAGTTT
* * *
46827 TTGGTTAAAAACGCGTTTCGGAGCCCGGCTCAATTTTACATGATTTTGGACGCAAAGACTCCTTG
66 TTGGCTAAAAACGCGTTTCGGAGCCCGACTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTG
*
46892 AAATATCTATATT-ATTCTAACCAAATCTCAGCCAAATTGGATTTAAGGATTTGTTTTTACGAGC
131 AAATATCTATATTCA-TCTAACCAAATCTCAGCCAAATTGGATATAAGGATTTGTTTTTACGAGC
* * * * * **
46956 ATCTTAATCTCGTTACGATTTAAATAGAAATTAATTCGGAAAAAAGTTGGAAAAATAAT-ATTAG
195 AACTGAATCTTGTTTCGATTTAAATAGAAATTAATTCGGAAAAAA-TTGGGAAAACGATAATTAG
* * * *
47020 AAGCGTGAAAAAACCTTTAATCTTTTTGGCTTTGAATTATATATTTTTTCTGAGTA
259 AAGCGTGAAAAACCCGTCAATCTTTTTGGCATTGAATTATATATTTTTTCTGAGTA
47076 GCGCGACAAA
Statistics
Matches: 807, Mismatches: 120, Indels: 73
0.81 0.12 0.07
Matches are distributed among these distances:
309 5 0.01
310 14 0.02
318 1 0.00
319 3 0.00
320 183 0.23
321 179 0.22
322 155 0.19
323 1 0.00
324 1 0.00
325 37 0.05
326 1 0.00
327 9 0.01
328 138 0.17
329 8 0.01
330 2 0.00
334 1 0.00
335 20 0.02
336 47 0.06
337 2 0.00
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.35
Consensus pattern (322 bp):
AAAAATTGAGGAAAAAAATTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAACCATCACAGTTT
TTGGCTAAAAACGCGTTTCGGAGCCCGACTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTG
AAATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGATATAAGGATTTGTTTTTACGAGCA
ACTGAATCTTGTTTCGATTTAAATAGAAATTAATTCGGAAAAAATTGGGAAAACGATAATTAGAA
GCGTGAAAAACCCGTCAATCTTTTTGGCATTGAATTATATATTTTTTCTGAGTATTGTTGCA
Found at i:49090 original size:322 final size:320
Alignment explanation
Indices: 47401--50575 Score: 4009
Period size: 322 Copynumber: 9.8 Consensus size: 320
47391 AAATCTTCTT
* * * * * *
47401 GGGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCGC-GATTTTTGGCTAAAAACGTGTTCCGT
1 GGGTCAGTTTTTAGCCGAAATCGTGTACTAA-CATCACAGTTTTTTGGCAAAAAACGCGTT-TGG
* * * *
47465 AGCCCGGCTCCATTTTGCATGATTTTGGGCGCAAAGATTCCTTGAAATATCTTTATTCATCTAAC
64 AGCCCGGCTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAAC
** * * * * ***
47530 CAAATCTCAGTCACATTGGATTTAAGAATTTGCTTTTACGAGCCTCTGAATCTTGTTTCGATTTA
129 CAAATCTCAACCACATTCGATATAAGGATTTGTTTTTACGAGTAACTGAATCTTGTTTCGATTTA
* * * * * * * *
47595 ATTAGAAATTAATTAGAAAAAAAGTTCGAAAAACGATA-TTAGAAGCGTAAAAAACCCTTTAATC
194 ATTAGAAATTAATTCGGAAAAAA--TGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATC
* * * *
47659 TTTATGACGTTGAATTATATATTTTTTCTGAGTATT-TTGGCAAAAAATAAATGGAGGAAAAACT
257 TTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTT-GCAAAAAAT---T-GAGAAAAAAAT
*
47723 TCTC
317 TTTC
* * * **
47727 TGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACAATTACTTCTTTTTTTCTTTTGG
1 GGGTC-A-----G----TTTTTAGCCGAAATCGTGTACTAAC-A-T-C-AC---AGTT-TTTTGG
* * * ** * * * * * * * *
47792 -ATAAAAACGCATTTTGTAGTCTTGATTAGTTTATA-ATAATTATGGTCGCAAAGTCTCATTGAA
48 CA-AAAAACGC-GTTTGGAGCCCGGCTCAATTT-TACATGATTTTGGGCGCAAAGACTCCTTGAA
* * * * * * *
47855 ATATCTATCTTCATCGAAACAAATCTCAACCACATTGGATATAAGGATTTGTTTTTACAAGCATC
110 ATATCTATATTCATCTAACCAAATCTCAACCACATTCGATATAAGGATTTGTTTTTACGAGTAAC
* *
47920 TGAATCTTATTTCGATTTAATTAGCAATTAATTCGGAAAAAAAATGGGAAAACGATATTTAGAAG
175 TGAATCTTGTTTCGATTTAATTAGAAATTAATTCGG--AAAAAATGGGAAAACGATATTTAGAAG
* * * *
47985 CATGAAAATCCCGTCAATCTTTTGGGCGTTGAATTATATATTTTTTCTAAGTATTGTTGCAAAGA
238 CGTGAAAATCCCGTCAATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTTGCAAAAA
*
48050 ATTGAGAAAAAAGTTTTC
303 ATTGAGAAAAAAATTTTC
* * * * * *
48068 GAGTCAGTTTTTAGCCGAAATCGTATATTAACCATCA-TGGTTTTTGGCTAAAAAA-GCGTTCCG
1 GGGTCAGTTTTTAGCCGAAATCGTGTACTAA-CATCACAGTTTTTTGGC-AAAAAACGCGTT-TG
* * *
48131 GAGCCCGGCTCAATTTTACATGATTTAGGGTGCAAAGACTCCTTGAAATATCTATATTCATTTAA
63 GAGCCCGGCTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAA
* *
48196 CCAAATCTCAGCCACATTCGATATAAGGATGTGTTTTTACGAGTAACTGAATCTTGTTTCGATTT
128 CCAAATCTCAACCACATTCGATATAAGGATTTGTTTTTACGAGTAACTGAATCTTGTTTCGATTT
* * * *
48261 AAATAGAAATTAATTCAGAAAAAATGGGAAAACGATAATTAGAAGCGTGAAAATCCAGTCAA--T
193 AATTAGAAATTAATTCGGAAAAAATGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCT
* * * *
48324 TTTTGGCATTGAATTATATATTTTTTCTGAGTATTATTACAAAAAATTGAGGAAAAAATTTTC
258 TTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTTGCAAAAAATTGAGAAAAAAATTTTC
* * *
48387 CGGTCAATTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTTTTTTGGCAAAAAACGCGTT
1 GGGTCAGTTTTTAGCCGAAATCGTGTACTAA-CATCACAG----TTTTTTGGCAAAAAACGCGTT
* * *
48452 TCAGAGCCCGGCTCAATTTTATATGATTTTGGGCGCATAGACTCCTTGAAATATCTATATTCATC
61 T-GGAGCCCGGCTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATC
* *
48517 TAACCAAATCTCAACCACATTCGATATACGGATTTTTTTTTACGAGTAACTGAATCTTG-TTCGA
125 TAACCAAATCTCAACCACATTCGATATAAGGATTTGTTTTTACGAGTAACTGAATCTTGTTTCGA
48581 TTTAATTAGAAATTAATTCGG-AAAAATGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAA
190 TTTAATTAGAAATTAATTCGGAAAAAATGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAA
*
48645 TCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTTGCATAAAATTGAGAAAAAAA-TTT
255 TCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTTGCAAAAAATTGAGAAAAAAATTTT
48709 C
320 C
* ** * * *
48710 CGGAAAGTTTTTAGCCGAAATCGTATACTAACCATCACGGGTTTTTGGCAAAAAACGCGTTTGGA
1 GGGTCAGTTTTTAGCCGAAATCGTGTACTAA-CATCACAGTTTTTTGGCAAAAAACGCGTTTGG-
* **
48775 AGCCAGGCTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTATT
64 AGCCCGGCTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAAC
*
48840 CAAATCTCAACCACATTCGATATAAGGATTTTCTTTTTACGAGTAACTGAATCTTGTTTCGATTT
129 CAAATCTCAACCACATTCGATATAAGGA-TTTGTTTTTACGAGTAACTGAATCTTGTTTCGATTT
*
48905 AATTAGAAATTAATTTGGAAAAAATGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCT
193 AATTAGAAATTAATTCGGAAAAAATGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCT
*
48970 TTTTGGCGTTGAATTATAT-TTTTTTCTGAGTATTGTTGCAAAAAATTTAGAAAAAAATTTTC
258 TTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTTGCAAAAAATTGAGAAAAAAATTTTC
*
49032 GGGTCAGTTTTTAGCCGAAAATCGTGTACGTTA-ATCACAGTTTTTTGGCAAAAAACGCGTTTCG
1 GGGTCAGTTTTTAGCCG-AAATCGTGTAC-TAACATCACAGTTTTTTGGCAAAAAACGCGTTT-G
49096 GAGCCCGGCTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAA
63 GAGCCCGGCTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAA
* * *
49161 CCAAATCTCAACCACATTCGATATACGGATTTGTTATTATGAGTAACTGAATCTTG-TTCGATTT
128 CCAAATCTCAACCACATTCGATATAAGGATTTGTTTTTACGAGTAACTGAATCTTGTTTCGATTT
* *
49225 AATTAGAAATTAATTCGG--AAAA-GGGAAAACGATATTTAGAAGCGTGAGAATCCCTTCAATCT
193 AATTAGAAATTAATTCGGAAAAAATGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCT
* * * *
49287 TATTGGCGTTGAATTATTTATATTTTCTGAGTATTTTTGCAAAAAATTGAGAAAAAAATTTTC
258 TTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTTGCAAAAAATTGAGAAAAAAATTTTC
* * *
49350 CGGTTAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTTGGCAAAAAACGCGTTTCGG
1 GGGTCAGTTTTTAGCCGAAATCGTGTACTAA-CATCACAGTTTTTTGGCAAAAAACGCGTTT-GG
* * * * * * *
49415 AGCACGACTCAATTTTACATGAGTTTAGGCGCAAAGGCTACTTGAAATATCTATATTCATTTAAC
64 AGCCCGGCTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAAC
* * * *
49480 CAAATCTCAATCACATTCGATATACGGATTTGTTTTTACGAGTATCTGAATCTTG-TTCGATTTG
129 CAAATCTCAACCACATTCGATATAAGGATTTGTTTTTACGAGTAACTGAATCTTGTTTCGATTTA
* *
49544 ATTAGAAATTAATT--AAAAAAAT-GGAAAACGATATTTAGAAGCGTGAAAATCCCTTCAATCTT
194 ATTAGAAATTAATTCGGAAAAAATGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCTT
* * *
49606 TTTGGCATTGAATTATAT-GTTTTTCTGAATATTGTTGCAAAAAATTGAG-AAAAAATTTTC
259 TTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTTGCAAAAAATTGAGAAAAAAATTTTC
*
49666 GGGTCAGTTTTTAGTCGAAATCGTGTACTAACCATCACAGTTTTTTGGCAAAAAACGCGTTTCGG
1 GGGTCAGTTTTTAGCCGAAATCGTGTACTAA-CATCACAGTTTTTTGGCAAAAAACGCGTTT-GG
*
49731 AGCCCGACTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAAC
64 AGCCCGGCTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAAC
* * *
49796 CAAATCTCAACCACATTCGATATAAGGATTTTCTTTTTAGGAGTAATTGAATCTTGTTTCGATTT
129 CAAATCTCAACCACATTCGATATAAGGA-TTTGTTTTTACGAGTAACTGAATCTTGTTTCGATTT
**** *
49861 AATTAGAAATTAATTTTTTTAAAAA-GGGAAAACAATATTTAGAAGCGTGAAAATCCCGTCAATC
193 AATTAGAAATTAA-TTCGGAAAAAATGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATC
* * *
49925 TTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTTTTG-GAAAAATTGAGAAAAAAATTCTC
257 TTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTTGCAAAAAATTGAGAAAAAAATTTTC
* * *
49988 GGGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCAC-GATTGTTTGGCAGAAAACGCGTTTCA
1 GGGTCAGTTTTTAGCCGAAATCGTGTACTAA-CATCACAG-TTTTTTGGCAAAAAACGCGTTT-G
*
50052 GAGCCCGGCTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCAATATTCATCTAA
63 GAGCCCGGCTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAA
* *
50117 CCAAATCTCAACCACATTCGATATACGGATTTGTTTTTACGAGTAACTGAATCATG-TTCGATTT
128 CCAAATCTCAACCACATTCGATATAAGGATTTGTTTTTACGAGTAACTGAATCTTGTTTCGATTT
**** * *
50181 AATTAGAAATTAATTTTTTTTAAAAA-GGGAAAACGATATTTAGAAGTGTTAAAATCCCGTCAAT
193 AATTAGAAATTAA--TTCGGAAAAAATGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAAT
* * *
50245 CTTTTTGGCATTAAATTATATATTTTTTTCT-TGTATTGTTGCAAAAAAATTGAGAAAAAAAATA
256 CTTTTTGGCGTTGAATTATATA-TTTTTTCTGAGTATTGTTGC-AAAAAATTGAG--AAAAAA-A
50309 TTTTC
316 TTTTC
* *
50314 GGGTCAGTTTTTAGCCGAAATCGAGTACTAACCATCACAGTTTTTTTTGGAAAAAAACGCGTTTC
1 GGGTCAGTTTTTAGCCGAAATCGTGTACTAA-CATCACAG--TTTTTTGGCAAAAAACGCGTTT-
** * *
50379 GGAGCCCTACTCAATTTTAAATGATTTTAGGCGCAAAGACTCCTTGAAATATCTATATTCATCTA
62 GGAGCCCGGCTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTA
*
50444 ACCAAATCTCAACCACATTCGATATACGGATTT-TTTTTACGAGTAACTGAATCTTGTTTCGATT
127 ACCAAATCTCAACCACATTCGATATAAGGATTTGTTTTTACGAGTAACTGAATCTTGTTTCGATT
*
50508 TAATTAGAAATTAATTCGGAAAAAATGGGAAAACGATATTCAGAAGCGTGAAAATCCCGTCAATC
192 TAATTAGAAATTAATTCGGAAAAAATGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATC
50573 TTT
257 TTT
50576 ATTGTTGCAA
Statistics
Matches: 2517, Mismatches: 258, Indels: 147
0.86 0.09 0.05
Matches are distributed among these distances:
316 159 0.06
317 116 0.05
318 300 0.12
319 198 0.08
320 73 0.03
321 295 0.12
322 427 0.17
323 218 0.09
324 188 0.07
325 7 0.00
326 53 0.02
327 63 0.03
328 133 0.05
329 1 0.00
330 1 0.00
331 22 0.01
332 2 0.00
335 2 0.00
336 24 0.01
337 1 0.00
338 1 0.00
339 1 0.00
340 1 0.00
341 15 0.01
342 1 0.00
343 1 0.00
344 142 0.06
345 64 0.03
346 8 0.00
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.35
Consensus pattern (320 bp):
GGGTCAGTTTTTAGCCGAAATCGTGTACTAACATCACAGTTTTTTGGCAAAAAACGCGTTTGGAG
CCCGGCTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACCA
AATCTCAACCACATTCGATATAAGGATTTGTTTTTACGAGTAACTGAATCTTGTTTCGATTTAAT
TAGAAATTAATTCGGAAAAAATGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCTTTT
TGGCGTTGAATTATATATTTTTTCTGAGTATTGTTGCAAAAAATTGAGAAAAAAATTTTC
Found at i:49851 original size:956 final size:963
Alignment explanation
Indices: 47402--51821 Score: 5970
Period size: 956 Copynumber: 4.6 Consensus size: 963
47392 AATCTTCTTG
* * * * * *
47402 GGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCGC-GATTTTTGGCTAAAAACGTGTTCCGTA
1 GGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTTGGCAAAAAACGCGTTTCGGA
* * * * *
47466 GCCCGGCTCCATTTTGCATGATTTTGGGCGCAAAGATTCCTTGAAATATCTTTATTCATCTAACC
66 GCCCGACTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACC
** * * * * * ***
47531 AAATCTCAGTCACATTGGATTTAAGAATTTGCTTTTACGAGCCTCTGAATCTTGTTTCGATTTAA
131 AAATCTCAACCACATTCGATATACGGATTTGTTTTTACGAGTAACTGAATCTTGTTTCGATTTAA
* * * * * * *
47596 TTAGAAATTAATTAGAAAAAAAGTTCGAAAAACGATA-TTAGAAGCGTAAAAAACCCTTTAATCT
196 TTAGAAATTAATT-CAAAAAAA--TGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCT
* * *
47660 TTATGACGTTGAATTATATATTTTTTCTGAGTATT-TTGGCAAAAAATAAATGGAGGAAAAACTT
258 TTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTT-GCAAAAAAT---T-GA-GAAAAAATT
* * * * * **
47724 CTCTGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACAATTACTTCTTTTTTTCTTT
317 TTCCGGTC-A-----G----TTTTTAGCCGAAATCGTGTACTAACCA-T-C-AC---AGTT-TTT
* * * ** * * * * * * *
47789 TGG-ATAAAAACGCATTTTGTAGTCTTGA-TTAGTTTATA-ATAATTATGGTCGCAAAGTCTCAT
365 TGGCA-AAAAACGCGTTTCGGAG-CCCGACTCAATTT-TACATGATTTTGGGCGCAAAGACTCCT
* * * * * *
47851 TGAAATATCTATCTTCATCGAAACAAATCTCAACCACATTGGATATAAGGA-TTTGTTTTTACAA
427 TGAAATATCTATATTCATCTAACCAAATCTCAACCACATTCGATATAAGGATTTTCTTTTTACGA
* * * *
47915 G-CATCTGAATCTTATTTCGATTTAATTAGCAATTAATTCGGAAAAAAAATGGGAAAACGATATT
492 GTAAT-TGAATCTTGTTTCGATTTAATTAGAAATTAATTTGG--AAAAAATGGGAAAACGATATT
* * *
47979 TAGAAGCATGAAAATCCCGTCAATCTTTTGGGCGTTGAATTATATATTTTTTCTAAGTATTGTTG
554 TAGAAGCGTGAAAATCCCGTCAATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTTG
* * * * * *
48044 CAAAGAATTGAGAAAAAAGTTTTCGAGTCAGTTTTTAGCCGAAATCGTATA-TTAACCATCATGG
619 CAAAAAATTGAGAAAAAAATTTTCGGGTCAGTTTTTAGCCGAAATCGTGTACTTAACCATCACGT
* * *
48108 TTTTTGGCTAAAAAA-GCGTTCCGGAGCCCGGCTCAATTTTACATGATTTAGGGTGCAAAGACTC
684 TTTTTGGC-AAAAAACGCGTTTCGGAGCCCGGCTCAATTTTACATGATTTTGGGCGCAAAGACTC
* * *
48172 CTTGAAATATCTATATTCATTTAACCAAATCTCAGCCACATTCGATATAAGGATGTGTTTTTACG
748 CTTGAAATATCTATATTCATCTAACCAAATCTCAACCACATTCGATATAAGGATTTGTTTTTACG
* *
48237 AGTAACTGAATCTTGTTTCGATTTAAATAGAAATTAATTCAGAAAAAATGGGAAAACGATAATTA
813 AGTAACTGAATCTTGTTTCGATTTAATTAGAAATTAATTC-G-AAAAATGGGAAAACGATATTTA
* * *
48302 GAAGCGTGAAAATCCAGTCAA--TTTTTGGCATTGAATTATATATTTTTTCTGAGTATTATTACA
876 GAAGCGTGAAAATCCCGTCAATCTTTTTGGCATTGAATTATATATTTTTTCTGAGTATTGTTGCA
*
48365 AAAAATTGAGGAAAAAATTTTCC
941 AAAAATTGAGAAAAAAATTTTCC
*
48388 GGTCAATTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTTTTTTGGCAAAAAACGCGTTT
1 GGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGG----TTTTTTGGCAAAAAACGCGTTT
* * * *
48453 CAGAGCCCGGCTCAATTTTATATGATTTTGGGCGCATAGACTCCTTGAAATATCTATATTCATCT
62 CGGAGCCCGACTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCT
*
48518 AACCAAATCTCAACCACATTCGATATACGGATTTTTTTTTACGAGTAACTGAATCTTG-TTCGAT
127 AACCAAATCTCAACCACATTCGATATACGGATTTGTTTTTACGAGTAACTGAATCTTGTTTCGAT
**
48582 TTAATTAGAAATTAATTCGGAAAAATGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATC
192 TTAATTAGAAATTAATTCAAAAAAATGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATC
* *
48647 TTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTTGCATAAAATTGAGAAAAAAATTTCCG
257 TTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTTGCAAAAAATTGAGAAAAAATTTTCCG
** * * *
48712 GAAAGTTTTTAGCCGAAATCGTATACTAACCATCACGGGTTTTTGGCAAAAAACGCGTTT-GGAA
322 GTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACAGTTTTTTGGCAAAAAACGCGTTTCGG-A
* * **
48776 GCCAGGCTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTATTC
386 GCCCGACTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACC
*
48841 AAATCTCAACCACATTCGATATAAGGATTTTCTTTTTACGAGTAACTGAATCTTGTTTCGATTTA
451 AAATCTCAACCACATTCGATATAAGGATTTTCTTTTTACGAGTAATTGAATCTTGTTTCGATTTA
48906 ATTAGAAATTAATTTGGAAAAAATGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCTT
516 ATTAGAAATTAATTTGGAAAAAATGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCTT
*
48971 TTTGGCGTTGAATTATAT-TTTTTTCTGAGTATTGTTGCAAAAAATTTAGAAAAAAATTTTCGGG
581 TTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTTGCAAAAAATTGAGAAAAAAATTTTCGGG
*
49035 TCAGTTTTTAGCCGAAAATCGTGTACGTTAATCA-CA-GTTTTTTGGCAAAAAACGCGTTTCGGA
646 TCAGTTTTTAGCCG-AAATCGTGTAC-TTAACCATCACGTTTTTTGGCAAAAAACGCGTTTCGGA
49098 GCCCGGCTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACC
709 GCCCGGCTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACC
* * *
49163 AAATCTCAACCACATTCGATATACGGATTTGTTATTATGAGTAACTGAATCTTG-TTCGATTTAA
774 AAATCTCAACCACATTCGATATAAGGATTTGTTTTTACGAGTAACTGAATCTTGTTTCGATTTAA
* * * *
49227 TTAGAAATTAATTCGGAAAA-GGGAAAACGATATTTAGAAGCGTGAGAATCCCTTCAATCTTATT
839 TTAGAAATTAATTCGAAAAATGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCTTTTT
* * * *
49291 GGCGTTGAATTATTTATATTTTCTGAGTATTTTTGCAAAAAATTGAGAAAAAAATTTTCC
904 GGCATTGAATTATATATTTTTTCTGAGTATTGTTGCAAAAAATTGAGAAAAAAATTTTCC
*
49351 GGTTAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTTGGCAAAAAACGCGTTTCGGA
1 GGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTTGGCAAAAAACGCGTTTCGGA
* * * * * *
49416 GCACGACTCAATTTTACATGAGTTTAGGCGCAAAGGCTACTTGAAATATCTATATTCATTTAACC
66 GCCCGACTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACC
* * *
49481 AAATCTCAATCACATTCGATATACGGATTTGTTTTTACGAGTATCTGAATCTTG-TTCGATTTGA
131 AAATCTCAACCACATTCGATATACGGATTTGTTTTTACGAGTAACTGAATCTTGTTTCGATTTAA
*
49545 TTAGAAATTAATT-AAAAAAAT-GGAAAACGATATTTAGAAGCGTGAAAATCCCTTCAATCTTTT
196 TTAGAAATTAATTCAAAAAAATGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCTTTT
* * * *
49608 TGGCATTGAATTATAT-GTTTTTCTGAATATTGTTGCAAAAAATTGAGAAAAAATTTTCGGGTCA
261 TGGCGTTGAATTATATATTTTTTCTGAGTATTGTTGCAAAAAATTGAGAAAAAATTTTCCGGTCA
*
49672 GTTTTTAGTCGAAATCGTGTACTAACCATCACAGTTTTTTGGCAAAAAACGCGTTTCGGAGCCCG
326 GTTTTTAGCCGAAATCGTGTACTAACCATCACAGTTTTTTGGCAAAAAACGCGTTTCGGAGCCCG
49737 ACTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATC
391 ACTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATC
*
49802 TCAACCACATTCGATATAAGGATTTTCTTTTTAGGAGTAATTGAATCTTGTTTCGATTTAATTAG
456 TCAACCACATTCGATATAAGGATTTTCTTTTTACGAGTAATTGAATCTTGTTTCGATTTAATTAG
*** *
49867 AAATTAATTTTTTTAAAAA-GGGAAAACAATATTTAGAAGCGTGAAAATCCCGTCAATCTTTTTG
521 AAATTAA-TTTGGAAAAAATGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCTTTTTG
* * *
49931 GCGTTGAATTATATATTTTTTCTGAGTATTTTTG-GAAAAATTGAGAAAAAAATTCTCGGGTCAG
585 GCGTTGAATTATATATTTTTTCTGAGTATTGTTGCAAAAAATTGAGAAAAAAATTTTCGGGTCAG
* * *
49995 TTTTTAGCCGAAATCGTGTAC-TAACCATCACGATTGTTTGGCAGAAAACGCGTTTCAGAGCCCG
650 TTTTTAGCCGAAATCGTGTACTTAACCATCACG-TTTTTTGGCAAAAAACGCGTTTCGGAGCCCG
*
50059 GCTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCAATATTCATCTAACCAAATC
714 GCTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATC
* *
50124 TCAACCACATTCGATATACGGATTTGTTTTTACGAGTAACTGAATCATG-TTCGATTTAATTAGA
779 TCAACCACATTCGATATAAGGATTTGTTTTTACGAGTAACTGAATCTTGTTTCGATTTAATTAGA
** * *
50188 AATTAATTTTTTTTAAAAA-GGGAAAACGATATTTAGAAGTGTTAAAATCCCGTCAATCTTTTTG
844 AATTAA----TTCGAAAAATGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCTTTTTG
* * *
50252 GCATTAAATTATATATTTTTTTCT-TGTATTGTTGCAAAAAAATTGAGAAAAAAAATATTTTCG
905 GCATTGAATTATATA-TTTTTTCTGAGTATTGTTGC-AAAAAATTGAG--AAAAAA-ATTTTCC
* * *
50315 GGTCAGTTTTTAGCCGAAATCGAGTACTAACCATCACAGTTTTTTTTGGAAAAAAACGCGTTTCG
1 GGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCAC-G-GTTTTTTGGCAAAAAACGCGTTTCG
* * *
50380 GAGCCCTACTCAATTTTAAATGATTTTAGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAA
64 GAGCCCGACTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAA
50445 CCAAATCTCAACCACATTCGATATACGGATTT-TTTTTACGAGTAACTGAATCTTGTTTCGATTT
129 CCAAATCTCAACCACATTCGATATACGGATTTGTTTTTACGAGTAACTGAATCTTGTTTCGATTT
* *
50509 AATTAGAAATTAATTCGGAAAAAATGGGAAAACGATATTCAGAAGCGTGAAAATCCCGTCAA---
194 AATTAGAAATTAATTC-AAAAAAATGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCT
*
50571 ---T--C------------------T-T---TATTGTTGC-AAAAATTTAGAAAAAAATTTTCCG
258 TTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTTGCAAAAAATTGAG-AAAAAATTTTCCG
* *
50608 GTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTTGGTAAAAAACGCGTTTCGGAG
322 GTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACAGTTTTTTGGCAAAAAACGCGTTTCGGAG
*
50673 CCCGACTCAATTTTACATGAGTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACCA
387 CCCGACTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACCA
*
50738 AATCTCAACCACATTCGATATAAGGATTTTCTTTTTAGGAGTAATTGAATCTTGTTTCGATTTAA
452 AATCTCAACCACATTCGATATAAGGATTTTCTTTTTACGAGTAATTGAATCTTGTTTCGATTTAA
*
50803 TTAGAAATTAATTTGGAAAGAATGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCTTT
517 TTAGAAATTAATTTGGAAAAAATGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCTTT
50868 TTGGCGTTGAATTATATATTTTTTCTGAGTATTGTTGCAAAAAATTGAGAAAAATAATTTTC-GG
582 TTGGCGTTGAATTATATATTTTTTCTGAGTATTGTTGCAAAAAATTGAGAAAAA-AATTTTCGGG
50932 TCAGTTTTTAGCCGAAATCGTGTAC-TAACCATCACGGTTTTTTGGCAAAAAACGCGTTTCGGAG
646 TCAGTTTTTAGCCGAAATCGTGTACTTAACCATCAC-GTTTTTTGGCAAAAAACGCGTTTCGGAG
*
50996 CCCGACTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACCA
710 CCCGGCTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACCA
* *
51061 AATCTCAACCACATTCGATATAAGGATTTTCTTTTTACGAGTAATTGAATCTTGTTTCGATTTAA
775 AATCTCAACCACATTCGATATAAGGA-TTTGTTTTTACGAGTAACTGAATCTTGTTTCGATTTAA
*
51126 TTAGAAATTAATTTGGAAAAATCGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCTTT
839 TTAGAAATTAA-TTCGAAAAAT-GGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCTTT
* * * * *
51191 TTGGCGTTGAATTATAAATTTTTTATGAGTATTGTTGCAAAAACTTGAGAAAAAAATTTTCG
902 TTGGCATTGAATTATATATTTTTTCTGAGTATTGTTGCAAAAAATTGAGAAAAAAATTTTCC
* *
51253 GGTAAGTTTTTAGCCGAAATCGTGTACTAACCATCACAGTTTTTTGGCAAAAAACGCGTTTCGGA
1 GGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTTGGCAAAAAACGCGTTTCGGA
51318 GCCCGACTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACC
66 GCCCGACTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACC
*
51383 AAATCTCAACCACATTCGATATACGGATTTGTTTTTATGAGTAACTGAATCTTGTTTCGATTTAA
131 AAATCTCAACCACATTCGATATACGGATTTGTTTTTACGAGTAACTGAATCTTGTTTCGATTTAA
** * *
51448 TTAGAAATTAATTTTTTTAAAAAA-GGGAAAATGATATTTAGAAGCGTGATAATCCCGTCAATCT
196 TTAGAAATTAA---TTCAAAAAAATGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCT
* *
51512 TTTTGGTGTTGATTTATATATTTTTTCTGAGTATTGTTGCAAAAAATTGAGAAAAAATTTTTCCG
258 TTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTTGCAAAAAATTGAGAAAAAA-TTTTCCG
*
51577 GTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACAGTTGTTTGGCAGAAAAACGCGTTTCGGA
322 GTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACAGTTTTTTGGCA-AAAAACGCGTTTCGGA
* *
51642 GCCCGACTCAATTTTTCATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAACC
386 GCCCGACTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACC
* * * * * * *
51707 AAATCTCAGCCACGTTGGATTTAAGGA-TTTGTTTTTACGAG-CATCTAAATCTTGTTTCGATTT
451 AAATCTCAACCACATTCGATATAAGGATTTTCTTTTTACGAGTAAT-TGAATCTTGTTTCGATTT
* * * *
51770 -ATTAGAAATTAATTCGAAAAAAATTGGAAAAATGATA-TTAGAAGCGTGAAAA
515 AATTAGAAATTAATTTGGAAAAAA-TGGGAAAACGATATTTAGAAGCGTGAAAA
51822 ATCTTTAAT
Statistics
Matches: 3086, Mismatches: 259, Indels: 196
0.87 0.07 0.06
Matches are distributed among these distances:
936 117 0.04
937 44 0.01
938 76 0.02
939 28 0.01
940 310 0.10
941 181 0.06
942 96 0.03
943 22 0.01
944 2 0.00
953 5 0.00
954 2 0.00
955 12 0.00
956 484 0.16
957 84 0.03
958 6 0.00
959 154 0.05
960 67 0.02
961 52 0.02
962 4 0.00
963 103 0.03
964 126 0.04
965 231 0.07
966 225 0.07
967 53 0.02
968 60 0.02
969 135 0.04
970 102 0.03
971 1 0.00
972 1 0.00
973 24 0.01
977 1 0.00
982 1 0.00
983 11 0.00
984 2 0.00
985 1 0.00
986 35 0.01
987 12 0.00
988 64 0.02
989 7 0.00
990 23 0.01
991 122 0.04
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (963 bp):
GGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTTGGCAAAAAACGCGTTTCGGA
GCCCGACTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACC
AAATCTCAACCACATTCGATATACGGATTTGTTTTTACGAGTAACTGAATCTTGTTTCGATTTAA
TTAGAAATTAATTCAAAAAAATGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCTTTT
TGGCGTTGAATTATATATTTTTTCTGAGTATTGTTGCAAAAAATTGAGAAAAAATTTTCCGGTCA
GTTTTTAGCCGAAATCGTGTACTAACCATCACAGTTTTTTGGCAAAAAACGCGTTTCGGAGCCCG
ACTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATC
TCAACCACATTCGATATAAGGATTTTCTTTTTACGAGTAATTGAATCTTGTTTCGATTTAATTAG
AAATTAATTTGGAAAAAATGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCTTTTTGG
CGTTGAATTATATATTTTTTCTGAGTATTGTTGCAAAAAATTGAGAAAAAAATTTTCGGGTCAGT
TTTTAGCCGAAATCGTGTACTTAACCATCACGTTTTTTGGCAAAAAACGCGTTTCGGAGCCCGGC
TCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTC
AACCACATTCGATATAAGGATTTGTTTTTACGAGTAACTGAATCTTGTTTCGATTTAATTAGAAA
TTAATTCGAAAAATGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCTTTTTGGCATTG
AATTATATATTTTTTCTGAGTATTGTTGCAAAAAATTGAGAAAAAAATTTTCC
Found at i:50201 original size:321 final size:321
Alignment explanation
Indices: 47401--51821 Score: 4463
Period size: 323 Copynumber: 13.8 Consensus size: 321
47391 AAATCTTCTT
* * * * *
47401 GGGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCGCGA-TTTTTGGCTAAAAACGTGTTCCGT
1 GGGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGATTTTTTGGCAAAAAACGCGTTTCGG
* * * *
47465 AGCCCGGCTCCATTTTGCATGATTTTGGGCGCAAAGATTCCTTGAAATATCTTTATTCATCTAAC
66 AGCCCGGCTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAAC
** * * * * ***
47530 CAAATCTCAGTCACATTGGATTTAAGAATTTGCTTTTACGAGCCTCTGAATCTTGTTTCGATTTA
131 CAAATCTCAACCACATTCGATATAAGGATTTGTTTTTACGAGTAACTGAATCTTGTTTCGATTTA
* * * * * * *
47595 ATTAGAAATTAA-TTAGAAAAAAAGTTCGAAAAACGATA-TTAGAAGCGTAAAAAACCCTTTAAT
196 ATTAGAAATTAATTTTG-AAAAAA--TGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAAT
* * * *
47658 CTTTATGACGTTGAATTATATATTTTTTCTGAGTATT-TTGGCAAAAAATAAATGGAGGAAAAAC
258 CTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTT-G-AAAAAAT---T-GAGAAAAAAA
*
47722 TTCTC
317 TTTTC
* * * * **
47727 TGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACAATTACTTCTTTTTTTCTTTTGG
1 GGGTC-A-----G----TTTTTAGCCGAAATCGTGTACTAACCA-T-C-AC---GATT-TTTTGG
* * * * ** * * * * * * * *
47792 -ATAAAAACGCATTTTGTAGTCTTGATTAGTTTATA-ATAATTATGGTCGCAAAGTCTCATTGAA
49 CA-AAAAACGCGTTTCGGAGCCCGGCTCAATTT-TACATGATTTTGGGCGCAAAGACTCCTTGAA
* * * * * * *
47855 ATATCTATCTTCATCGAAACAAATCTCAACCACATTGGATATAAGGATTTGTTTTTACAAGCATC
112 ATATCTATATTCATCTAACCAAATCTCAACCACATTCGATATAAGGATTTGTTTTTACGAGTAAC
* * **
47920 TGAATCTTATTTCGATTTAATTAGCAATTAATTCGGAAAAAAAATGGGAAAACGATATTTAGAAG
177 TGAATCTTGTTTCGATTTAATTAGAAATTAATTTTG--AAAAAATGGGAAAACGATATTTAGAAG
* * * *
47985 CATGAAAATCCCGTCAATCTTTTGGGCGTTGAATTATATATTTTTTCTAAGTATTGTTGCAAAGA
240 CGTGAAAATCCCGTCAATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTTG-AAAAA
*
48050 ATTGAGAAAAAAGTTTTC
304 ATTGAGAAAAAAATTTTC
* * * * * *
48068 GAGTCAGTTTTTAGCCGAAATCGTATATTAACCATCATG-GTTTTTGGCTAAAAAA-GCGTTCCG
1 GGGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGATTTTTTGGC-AAAAAACGCGTTTCG
* * *
48131 GAGCCCGGCTCAATTTTACATGATTTAGGGTGCAAAGACTCCTTGAAATATCTATATTCATTTAA
65 GAGCCCGGCTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAA
* *
48196 CCAAATCTCAGCCACATTCGATATAAGGATGTGTTTTTACGAGTAACTGAATCTTGTTTCGATTT
130 CCAAATCTCAACCACATTCGATATAAGGATTTGTTTTTACGAGTAACTGAATCTTGTTTCGATTT
* ** * *
48261 AAATAGAAATTAATTCAGAAAAAATGGGAAAACGATAATTAGAAGCGTGAAAATCCAGTCAA--T
195 AATTAGAAATTAATTTTGAAAAAATGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCT
* * * *
48324 TTTTGGCATTGAATTATATATTTTTTCTGAGTATTATTACAAAAAATTGAGGAAAAAATTTTC
260 TTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTT-GAAAAAATTGAGAAAAAAATTTTC
* * *
48387 CGGTCAATTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTTTTTTGGCAAAAAACGCGTT
1 GGGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCAC-G---ATTTTTTGGCAAAAAACGCGTT
* * *
48452 TCAGAGCCCGGCTCAATTTTATATGATTTTGGGCGCATAGACTCCTTGAAATATCTATATTCATC
62 TCGGAGCCCGGCTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATC
* *
48517 TAACCAAATCTCAACCACATTCGATATACGGATTTTTTTTTACGAGTAACTGAATCTTG-TTCGA
127 TAACCAAATCTCAACCACATTCGATATAAGGATTTGTTTTTACGAGTAACTGAATCTTGTTTCGA
* *
48581 TTTAATTAGAAATTAA-TTCGGAAAAATGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAA
192 TTTAATTAGAAATTAATTTTGAAAAAATGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAA
*
48645 TCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTTGCATAAAATTGAGAAAAAAA-TTT
257 TCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTTG-AAAAAATTGAGAAAAAAATTTT
48709 C
321 C
* ** * **
48710 CGGAAAGTTTTTAGCCGAAATCGTATACTAACCATCACGGGTTTTTGGCAAAAAACGCGTTT-GG
1 GGGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGATTTTTTGGCAAAAAACGCGTTTCGG
* *
48774 AAGCCAGGCTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAT
66 -AGCCCGGCTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAA
* *
48839 TCAAATCTCAACCACATTCGATATAAGGATTTTCTTTTTACGAGTAACTGAATCTTGTTTCGATT
130 CCAAATCTCAACCACATTCGATATAAGGA-TTTGTTTTTACGAGTAACTGAATCTTGTTTCGATT
*
48904 TAATTAGAAATTAATTTGGAAAAAATGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATC
194 TAATTAGAAATTAATTTTGAAAAAATGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATC
*
48969 TTTTTGGCGTTGAATTATAT-TTTTTTCTGAGTATTGTTGCAAAAAATTTAGAAAAAAATTTTC
259 TTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTTG-AAAAAATTGAGAAAAAAATTTTC
*
49032 GGGTCAGTTTTTAGCCGAAAATCGTGTACGTTA--ATCAC-AGTTTTTTGGCAAAAAACGCGTTT
1 GGGTCAGTTTTTAGCCG-AAATCGTGTAC-TAACCATCACGA-TTTTTTGGCAAAAAACGCGTTT
49094 CGGAGCCCGGCTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCT
63 CGGAGCCCGGCTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCT
* * *
49159 AACCAAATCTCAACCACATTCGATATACGGATTTGTTATTATGAGTAACTGAATCTTG-TTCGAT
128 AACCAAATCTCAACCACATTCGATATAAGGATTTGTTTTTACGAGTAACTGAATCTTGTTTCGAT
* * * *
49223 TTAATTAGAAATTAA-TTCG-GAAAA-GGGAAAACGATATTTAGAAGCGTGAGAATCCCTTCAAT
193 TTAATTAGAAATTAATTTTGAAAAAATGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAAT
* * * *
49285 CTTATTGGCGTTGAATTATTTATATTTTCTGAGTATTTTTGCAAAAAATTGAGAAAAAAATTTTC
258 CTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTTG-AAAAAATTGAGAAAAAAATTTTC
* * *
49350 CGGTTAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTTGGCAAAAAACGCGTTTCGG
1 GGGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGATTTTTTGGCAAAAAACGCGTTTCGG
* * * * * * *
49415 AGCACGACTCAATTTTACATGAGTTTAGGCGCAAAGGCTACTTGAAATATCTATATTCATTTAAC
66 AGCCCGGCTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAAC
* * * *
49480 CAAATCTCAATCACATTCGATATACGGATTTGTTTTTACGAGTATCTGAATCTTG-TTCGATTTG
131 CAAATCTCAACCACATTCGATATAAGGATTTGTTTTTACGAGTAACTGAATCTTGTTTCGATTTA
* *
49544 ATTAGAAATTAA--TTAAAAAAAT-GGAAAACGATATTTAGAAGCGTGAAAATCCCTTCAATCTT
196 ATTAGAAATTAATTTTGAAAAAATGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCTT
* * *
49606 TTTGGCATTGAATTATAT-GTTTTTCTGAATATTGTTGCAAAAAATTGAG-AAAAAATTTTC
261 TTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTTG-AAAAAATTGAGAAAAAAATTTTC
*
49666 GGGTCAGTTTTTAGTCGAAATCGTGTACTAACCATCAC-AGTTTTTTGGCAAAAAACGCGTTTCG
1 GGGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGA-TTTTTTGGCAAAAAACGCGTTTCG
*
49730 GAGCCCGACTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAA
65 GAGCCCGGCTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAA
* * *
49795 CCAAATCTCAACCACATTCGATATAAGGATTTTCTTTTTAGGAGTAATTGAATCTTGTTTCGATT
130 CCAAATCTCAACCACATTCGATATAAGGA-TTTGTTTTTACGAGTAACTGAATCTTGTTTCGATT
** *
49860 TAATTAGAAATTAATTTTTTTAAAAA-GGGAAAACAATATTTAGAAGCGTGAAAATCCCGTCAAT
194 TAATTAGAAATTAA-TTTTGAAAAAATGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAAT
* * *
49924 CTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTTTTGGAAAAATTGAGAAAAAAATTCTC
258 CTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTTGAAAAAATTGAGAAAAAAATTTTC
* * *
49988 GGGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGATTGTTTGGCAGAAAACGCGTTTCAG
1 GGGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGATTTTTTGGCAAAAAACGCGTTTCGG
*
50053 AGCCCGGCTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCAATATTCATCTAAC
66 AGCCCGGCTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAAC
* *
50118 CAAATCTCAACCACATTCGATATACGGATTTGTTTTTACGAGTAACTGAATCATG-TTCGATTTA
131 CAAATCTCAACCACATTCGATATAAGGATTTGTTTTTACGAGTAACTGAATCTTGTTTCGATTTA
** * *
50182 ATTAGAAATTAATTTTTTTTAAAAA-GGGAAAACGATATTTAGAAGTGTTAAAATCCCGTCAATC
196 ATTAGAAATTAA--TTTTGAAAAAATGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATC
* * *
50246 TTTTTGGCATTAAATTATATATTTTTTTCT-TGTATTGTTGCAAAAAAATTGAGAAAAAAAATAT
259 TTTTTGGCGTTGAATTATATA-TTTTTTCTGAGTATTGTTG--AAAAAATTGAG--AAAAAA-AT
50310 TTTC
318 TTTC
* * *
50314 GGGTCAGTTTTTAGCCGAAATCGAGTACTAACCATCACAGTTTTTTTTGGAAAAAAACGCGTTTC
1 GGGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCAC-G-ATTTTTTGGCAAAAAACGCGTTTC
** * *
50379 GGAGCCCTACTCAATTTTAAATGATTTTAGGCGCAAAGACTCCTTGAAATATCTATATTCATCTA
64 GGAGCCCGGCTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTA
*
50444 ACCAAATCTCAACCACATTCGATATACGGATTT-TTTTTACGAGTAACTGAATCTTGTTTCGATT
129 ACCAAATCTCAACCACATTCGATATAAGGATTTGTTTTTACGAGTAACTGAATCTTGTTTCGATT
** *
50508 TAATTAGAAATTAATTCGGAAAAAATGGGAAAACGATATTCAGAAGCGTGAAAATCCCGTCAATC
194 TAATTAGAAATTAATTTTGAAAAAATGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATC
*** * * ** * * *** * * *
50573 TTTATTGTTGC-AAAAATTTAGAAAAAAATTTTCCG-GTCAGTTTTTAGCCGAAATCGTGTACTA
259 TTT-TTG--GCGTTGAA-TT--ATATATTTTTTCTGAGT-A-TTGTT-GAAAAAATTGAG-A-AA
** **
50636 ACCA-TCAC
313 AAAATTTTC
* *** * * * * * * * *
50644 -GGT---TTTTTGGTAAAAAACGCGTTTCGGAGCCCGACTCA--A--TTTT------ACATGAGT
1 GGGTCAGTTTTTAGCCGAAATCGTG-TAC-TA-ACC-A-TCACGATTTTTTGGCAAAAAACGCGT
* * ** * * * * * *** * * * * *
50695 TTGGGCGCAAAGACTC--CTTGAAAT-ATCTATATTCATC-TA-A--CC---AAATCTCAACCAC
61 TTCGGAGC-CCGGCTCAATTTTACATGAT-TTTGGGC-GCAAAGACTCCTTGAAA--T-ATCTAT
* ** ** *** * * * * *
50750 ATTCGATATAA--GGAT-T--TTCTTTTTAGGAGTA-ATTGAATCTTG--TTT-CGATTTAATTA
120 ATTC-ATCTAACCAAATCTCAACCACATT-CGA-TATA-AGGAT-TTGTTTTTACGA-GTAACT-
** * *** ** *** * ** * *
50806 GAAAT-TAATTTGGAAAGAATGGGAAAACGATATTT--AGAAGCGTGAAAATCCCGTCAATCTTT
178 G-AATCTTGTTTCGATTTAATTAGAAATTAAT-TTTGAAAAAATGGGAAAA---CG---AT-ATT
* * * *
50868 TTG--GCGTTG--AAT----T-ATATATTTTT-TC--TG----A-GTA-----T-T--G--TTG-
234 TAGAAGCG-TGAAAATCCCGTCA-ATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGT
*
50905 -CAAAAAATTGAGAAAAATAATTTTC
297 TGAAAAAATTGAGAAAAA-AATTTTC
*
50930 -GGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTTGGCAAAAAACGCGTTTCGG
1 GGGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGATTTTTTGGCAAAAAACGCGTTTCGG
*
50994 AGCCCGACTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAAC
66 AGCCCGGCTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAAC
* *
51059 CAAATCTCAACCACATTCGATATAAGGATTTTCTTTTTACGAGTAATTGAATCTTGTTTCGATTT
131 CAAATCTCAACCACATTCGATATAAGGA-TTTGTTTTTACGAGTAACTGAATCTTGTTTCGATTT
*
51124 AATTAGAAATTAA-TTTGGAAAAATCGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATC
195 AATTAGAAATTAATTTTGAAAAAAT-GGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATC
* * *
51188 TTTTTGGCGTTGAATTATAAATTTTTTATGAGTATTGTTGCAAAAACTTGAGAAAAAAATTTTC
259 TTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTTG-AAAAAATTGAGAAAAAAATTTTC
*
51252 GGGTAAGTTTTTAGCCGAAATCGTGTACTAACCATCAC-AGTTTTTTGGCAAAAAACGCGTTTCG
1 GGGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGA-TTTTTTGGCAAAAAACGCGTTTCG
*
51316 GAGCCCGACTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAA
65 GAGCCCGGCTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAA
* *
51381 CCAAATCTCAACCACATTCGATATACGGATTTGTTTTTATGAGTAACTGAATCTTGTTTCGATTT
130 CCAAATCTCAACCACATTCGATATAAGGATTTGTTTTTACGAGTAACTGAATCTTGTTTCGATTT
* * *
51446 AATTAGAAATTAATTTTTTTAAAAAA-GGGAAAATGATATTTAGAAGCGTGATAATCCCGTCAAT
195 AATTAGAAATTAA--TTTTGAAAAAATGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAAT
* * *
51510 CTTTTTGGTGTTGATTTATATATTTTTTCTGAGTATTGTTGCAAAAAATTGAGAAAAAATTTTTC
258 CTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTTG-AAAAAATTGAGAAAAAAATTTTC
* *
51575 CGGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCAC-AGTTGTTTGGCAGAAAAACGCGTTTC
1 GGGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGA-TTTTTTGGCA-AAAAACGCGTTTC
* * *
51639 GGAGCCCGACTCAATTTTTCATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCAA
64 GGAGCCCGGCTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTA
* * * * * * *
51704 ACCAAATCTCAGCCACGTTGGATTTAAGGATTTGTTTTTACGAGCATCTAAATCTTGTTTCGATT
129 ACCAAATCTCAACCACATTCGATATAAGGATTTGTTTTTACGAGTAACTGAATCTTGTTTCGATT
* * *
51769 T-ATTAGAAATTAA-TTCGAAAAAAATTGGAAAAATGATA-TTAGAAGCGTGAAAA
194 TAATTAGAAATTAATTTTG-AAAAAA-TGGGAAAACGATATTTAGAAGCGTGAAAA
51822 ATCTTTAAT
Statistics
Matches: 3435, Mismatches: 468, Indels: 388
0.80 0.11 0.09
Matches are distributed among these distances:
284 5 0.00
285 3 0.00
286 13 0.00
287 1 0.00
288 6 0.00
289 14 0.00
293 6 0.00
294 12 0.00
295 14 0.00
296 7 0.00
297 8 0.00
298 12 0.00
299 8 0.00
300 11 0.00
301 26 0.01
302 25 0.01
303 5 0.00
305 2 0.00
309 2 0.00
310 1 0.00
311 3 0.00
312 12 0.00
313 28 0.01
314 21 0.01
315 14 0.00
316 166 0.05
317 123 0.04
318 312 0.09
319 214 0.06
320 81 0.02
321 298 0.09
322 497 0.14
323 548 0.16
324 320 0.09
325 19 0.01
326 65 0.02
327 65 0.02
328 137 0.04
329 9 0.00
330 8 0.00
331 35 0.01
332 13 0.00
333 4 0.00
334 1 0.00
335 1 0.00
336 25 0.01
337 1 0.00
338 1 0.00
339 1 0.00
340 1 0.00
341 15 0.00
342 1 0.00
343 1 0.00
344 141 0.04
345 64 0.02
346 9 0.00
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (321 bp):
GGGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGATTTTTTGGCAAAAAACGCGTTTCGG
AGCCCGGCTCAATTTTACATGATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAAC
CAAATCTCAACCACATTCGATATAAGGATTTGTTTTTACGAGTAACTGAATCTTGTTTCGATTTA
ATTAGAAATTAATTTTGAAAAAATGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCTT
TTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTTGAAAAAATTGAGAAAAAAATTTTC
Done.