Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01014580.1 Corchorus olitorius cultivar O-4 contig14613, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10874
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32
Found at i:672 original size:322 final size:321
Alignment explanation
Indices: 7--2776 Score: 4074
Period size: 322 Copynumber: 8.7 Consensus size: 321
1 TTTTTC
* * *
7 TTTCTGAGTATTGTTGCAAAAAATTTAGAAAAAAAAATTTTCGGGTCAGTTTTTACCCGAAATCG
1 TTTCTGAGTATTGTTGCAAAAAA-TT-GAGAAAAAAATTTTCCGGTCAGTTTTTAGCCGAAATCG
*
72 TGTACGT-----T-ACAGTTTTTTTGGCAAAAAACGCGTTTCGGAACCCGGCTCAATTTTACATG
64 TGTAC-TAACCATCACAG-TTTTTTGGCAAAAAACGCGTTTCGGAGCCCGGCTCAATTTTACATG
* * * *
131 ATTTTGGGCGCAAAAACTCCTTGAAATATCTATATTCATCTAACTATATCTCAACCCCATTCGAT
127 ATTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAACCACATTCGAT
*
196 ATACGGATTTTTTTTTACGAGCAACTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAA
192 ATACGGATTTTTTTTTACGAGTAACTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAA
*
261 ATGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCTTTTTGGCGTTGAATTATTTATTT
257 ATGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCTTTTTGGCGTTGAATTATATATTT
* *
326 TTTCTGAGTATTTTTGCAAAAAAATTGAGAAAAAAATTTTCCGGTAAGTTTTTAGCCGAAATCGT
1 TTTCTGAGTATTGTTGC-AAAAAATTGAGAAAAAAATTTTCCGGTCAGTTTTTAGCCGAAATCGT
* * *
391 GTACTAACCATCACGGTTTTTTGGCAAAAAACGCGTTTAGGAGCCTGGCTCAATTTTACATGATT
65 GTACTAACCATCACAGTTTTTTGGCAAAAAACGCGTTTCGGAGCCCGGCTCAATTTTACATGATT
* *
456 TTGGCCGCAAAAACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAACCACATTCGATATA
130 TTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAACCACATTCGATATA
* * *
521 AGGATTTTCTTTTTACGAGTAATTGAATCTTGTTTCGATTTAATTAGAAATTAATTTGGAAAAAA
195 CGGATTTT-TTTTTACGAGTAACTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGG-AAAAA
*
586 TGGGAAAACGATATTTAGAAACGTGAAAATCCCGTCAATCTTTTTGGCGTTGAA-TA-ATATCTT
258 TGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCTTTTTGGCGTTGAATTATATAT-TT
* *
649 TTTCTGAGTATTGTTGCAAAAAATTTAGAAAAAAAATTTT-GGGTCAGTTTTTAGCCGAAATCGT
1 TTTCTGAGTATTGTTGCAAAAAATTGAG-AAAAAAATTTTCCGGTCAGTTTTTAGCCGAAATCGT
* *
713 GTACGTTA--ATCACAATTTTTTGGCAAAAAACGCGTTTCGGAGCCCGGCTCAATTTTACATGAT
65 GTAC-TAACCATCACAGTTTTTTGGCAAAAAACGCGTTTCGGAGCCCGGCTCAATTTTACATGAT
* **
776 TTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATTTAACCAAATCTGGACCACATTCGATAT
129 TTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAACCACATTCGATAT
* * *
841 ACGGATTTTTTTTTACGAGCAACTGAATCTTGTTTCGATTTTATTAGAAATTAATTCAGAAAAAT
194 ACGGATTTTTTTTTACGAGTAACTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAT
* *
906 GGGAAAACGATATTTAGAAGCGTGAGAATCCCGTCAATCTTTTTGGCGTTGAATTATTTATTT
259 GGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCTTTTTGGCGTTGAATTATATATTT
* *
969 TTTTTGAGTAATT-TTGCAAAAAATTGAGAAAAAAATTTTCGGGTCAGTTTTTAGCCGAAATCGT
1 TTTCTGAGT-ATTGTTGCAAAAAATTGAGAAAAAAATTTTCCGGTCAGTTTTTAGCCGAAATCGT
* * * *
1033 GTACTAACCATCACTATTTTTTTGGCAAAAATCGTGTTTCGGAGCCCGGATCAATTTTACATGAT
65 GTACTAACCATCAC-AGTTTTTTGGCAAAAAACGCGTTTCGGAGCCCGGCTCAATTTTACATGAT
*
1098 TTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAACCACACTCGATAT
129 TTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAACCACATTCGATAT
** * * *
1163 ACGGATTGGTTTTTACGAGTAACTGAATCTTTTTTCGATTTAATTAGAAATTAATT--AAAAAAA
194 ACGGATTTTTTTTTACGAGTAACTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAT
* * * *
1226 GGGAAAACGATTTTTCGAAGCGTGAAAATCCCTTCAATCTTTTTGGCGTTGAGTTATATATTT
259 GGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCTTTTTGGCGTTGAATTATATATTT
* * * **
1289 TTTCTGAGTATTGTTGCAAAAAATTGAGAAAAAAAATTTCGGGTCAGTTTTTAGTCGAAATTTTG
1 TTTCTGAGTATTGTTGCAAAAAATTGAGAAAAAAATTTTCCGGTCAGTTTTTAGCCGAAATCGTG
* *
1354 TACTAACCAACACAGTTTTTTGG-AAAAAACGCGTTTCAGAGCCCGGCTCAATTTTACATGATTT
66 TACTAACCATCACAGTTTTTTGGCAAAAAACGCGTTTCGGAGCCCGGCTCAATTTTACATGATTT
1418 TGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAACCACATTCGATATAC
131 TGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAACCACATTCGATATAC
* * *** **
1483 GGATTTGTTTTTACGAGTAACTGAATCTTG-TTCGATTTAATTAGAAATGAATTAAAAAAAAAAG
196 GGATTTTTTTTTACGAGTAACTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAATGG
*
1547 GAAAACGATATTTAGAAGCGTGAAAATCCCTTCAATCTTTTTGGCGTTGAATTATATA-TT
261 GAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCTTTTTGGCGTTGAATTATATATTT
* * * * *
1607 TTTCTGATTATTATTCCAAAAAATTGAGAAAAAAATTTTCCGGTAAGTTTTTAACCGAAATCGTG
1 TTTCTGAGTATTGTTGCAAAAAATTGAGAAAAAAATTTTCCGGTCAGTTTTTAGCCGAAATCGTG
* * *
1672 TACTAACCATCACGGGTTTTTTTTGGCAAAAAACGCGTTTCAGAGCCCGGCTCAATTTTATATGA
66 TACTAACCATCAC-AG--TTTTTTGGCAAAAAACGCGTTTCGGAGCCCGGCTCAATTTTACATGA
* * *
1737 TTTTAGGCGCAAAGACTCCTTGAAATATCTATATTCATTTAACCAAATCTGAACCACATTCGATA
128 TTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAACCACATTCGATA
* *
1802 TACGGA-TTTTTTTTACGAGCAACTGAATCTTGTTTCGAGTTAATTAGAAATTAATTCGGAAAAA
193 TACGGATTTTTTTTTACGAGTAACTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAA
* * * *
1866 TGGGAAAACGATATTTAGAAGCGTGAGAATCCCGTCAATATTATTGGCGTTGAATTATTTATTT
258 TGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCTTTTTGGCGTTGAATTATATATTT
* * *
1930 TTTCTGAGTATTTTTGCAAAAAATTGACAAAAAAAATTTTCCGGTTAGTTTTTAGCCGAAAATCG
1 TTTCTGAGTATTGTTGCAAAAAATTGA-GAAAAAAATTTTCCGGTCAGTTTTTAGCCG-AAATCG
* *** *
1995 TGTACTAACCATCACAGTGTTTTTGGCAAAAATCGCGTTTCGGAATTCGGCTCAATTGTACATGA
64 TGTACTAACCATCACAGT-TTTTTGGCAAAAAACGCGTTTCGGAGCCCGGCTCAATTTTACATGA
2060 TTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAACCACATTCGATA
128 TTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAACCACATTCGATA
* * *
2125 TAAGGATTTTTTTTTACGAGTAATTGAATCTTGTTTCGATTTAACTAGAAATTAATTCGGAAAAA
193 TACGGATTTTTTTTTACGAGTAACTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAA
* *
2190 TGGGAAAACGATATTTAGAAGCGTGAAAATCACGTCAATCTTTTTGGGGTTGAATTATATATTT
258 TGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCTTTTTGGCGTTGAATTATATATTT
* * *
2254 TTTCTGAGTATTGTTGCAAAAGATTGAGAAAAAAATTTTCCGATCAG-TTTTAGCCGAAATCATG
1 TTTCTGAGTATTGTTGCAAAAAATTGAGAAAAAAATTTTCCGGTCAGTTTTTAGCCGAAATCGTG
* *
2318 TACTAACCATCACGGTTTTTTGGCAAAAAACGCGTTTCGAAGCCCGGCTCAATTTTACATGATTT
66 TACTAACCATCACAGTTTTTTGGCAAAAAACGCGTTTCGGAGCCCGGCTCAATTTTACATGATTT
* * *
2383 TGGGCACAAAGACTCCTTGAAATATCTATATTCATCTAACTAAATCTCAACCACATTAGATATAC
131 TGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAACCACATTCGATATAC
* * * ** *
2448 GGATTTGTTTTTATGAGTAACTGAATCTT-ATTCGATTTAATTAGAAATTAATT-AAAAAAAAGG
196 GGATTTTTTTTTACGAGTAACTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAATGG
*
2511 GAAAACGATATTTAGAAGCGTGAAAATCCCTTCAATCTTTTTGGCGTTGAATTATAT-TTT
261 GAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCTTTTTGGCGTTGAATTATATATTT
* * *
2571 TTTCTGAGTATTGTTGCAAAAAATTTAGAAAAAAA-TTTCCGGGTTAGTTTTTAGCCGAAA--GC
1 TTTCTGAGTATTGTTGCAAAAAATTGAGAAAAAAATTTTCC-GGTCAGTTTTTAGCCGAAATCGT
*
2633 G---T---CATCACAGTTTTTTGG-AAAAAACGCGTTTCGAAGCCCGGCTCAATTTTACATGATT
65 GTACTAACCATCACAGTTTTTTGGCAAAAAACGCGTTTCGGAGCCCGGCTCAATTTTACATGATT
* * * *
2691 TTGGGCGCAAAGACTCCTTGAATTATCTATATTCATCTAACTATATCTCAACCCCATTCGATATA
130 TTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAACCACATTCGATATA
*
2756 AGGATTTTCTTTTTACGAGTA
195 CGGATTTT-TTTTTACGAGTA
2777 TGATGAACCA
Statistics
Matches: 2230, Mismatches: 186, Indels: 79
0.89 0.07 0.03
Matches are distributed among these distances:
309 106 0.05
310 26 0.01
313 1 0.00
316 6 0.00
317 63 0.03
318 310 0.14
319 186 0.08
320 365 0.16
321 184 0.08
322 507 0.23
323 232 0.10
324 223 0.10
325 21 0.01
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (321 bp):
TTTCTGAGTATTGTTGCAAAAAATTGAGAAAAAAATTTTCCGGTCAGTTTTTAGCCGAAATCGTG
TACTAACCATCACAGTTTTTTGGCAAAAAACGCGTTTCGGAGCCCGGCTCAATTTTACATGATTT
TGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAACCACATTCGATATAC
GGATTTTTTTTTACGAGTAACTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAATGG
GAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCTTTTTGGCGTTGAATTATATATTT
Found at i:2497 original size:643 final size:639
Alignment explanation
Indices: 7--2776 Score: 4111
Period size: 643 Copynumber: 4.3 Consensus size: 639
1 TTTTTC
*
7 TTTCTGAGTATTGTTGCAAAAAATTTAGAAAAAAAAATTTTCGGGTCAGTTTTTACCCGAAATCG
1 TTTCTGAGTATTGTTGCAAAAAA-TT-GAAAAAAAAATTTTCGGGTCAGTTTTTAGCCGAAATCG
72 TGTACGT---T-ACAGTTTTTTTGGCAAAAAACGCGTTTCGGAACCCGGCTCAATTTTACATGAT
64 TGTAC-TACATCACAG-TTTTTTGGCAAAAAACGCGTTTCGGAACCCGGCTCAATTTTACATGAT
* * * *
133 TTTGGGCGCAAAAACTCCTTGAAATATCTATATTCATCTAACTATATCTCAACCCCATTCGATAT
127 TTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAACCACATTCGATAT
* *
198 ACGGATTTTTTTTTACGAGCAACTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAT
192 ACGGATTTTTTTTTACGAGTAACTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAT
*
263 GGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCTTTTTGGCGTTGAATTATTTATTTTT
257 GGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCTTTTTGGCGTTGAATTATATATTTTT
328 TCTGAGTATTTTTGCAAAAAAATTGAGAAAAAAATTTTCCGGTAAGTTTTTAGCCGAAATCGTGT
322 TCTGAGTA-TTTTGC-AAAAAATTGAGAAAAAAATTTTCCGGTAAGTTTTTAGCCGAAATCGTGT
* * *
393 ACTAACCATCAC-GGTTTTTTGGCAAAAAACGCGTTTAGGAGCCTGGCTCAATTTTACATGATTT
385 ACTAACCATCACGGGTTTTTTGGCAAAAAACGCGTTTCGAAGCCCGGCTCAATTTTACATGATTT
* * *
457 TGGCCGCAAAAACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAACCACATTCGATATAA
450 TGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAACCACATTCGATATAC
* * *
522 GGATTTTCTTTTTACGAGTAATTGAATCTTGTTTCGATTTAATTAGAAATTAATTTGGAAAAAAT
515 GGA-TTTGTTTTTACGAGTAACTGAATCTTGTTTCGATTTAATTAGAAATTAA-TT-GAAAAAAA
*
587 GGGAAAACGATATTTAGAAACGTGAAAATCCCGTCAATCTTTTTGGCGTTGAA-TA-ATATCTT
577 GGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCTTTTTGGCGTTGAATTATATAT-TT
*
649 TTTCTGAGTATTGTTGCAAAAAATTTAGAAAAAAAATTTT-GGGTCAGTTTTTAGCCGAAATCGT
1 TTTCTGAGTATTGTTGCAAAAAATTGA-AAAAAAAATTTTCGGGTCAGTTTTTAGCCGAAATCGT
* *
713 GTACGTTA-ATCACAATTTTTTGGCAAAAAACGCGTTTCGGAGCCCGGCTCAATTTTACATGATT
65 GTAC--TACATCACAGTTTTTTGGCAAAAAACGCGTTTCGGAACCCGGCTCAATTTTACATGATT
* **
777 TTGGGCGCAAAGACTCCTTGAAATATCTATATTCATTTAACCAAATCTGGACCACATTCGATATA
128 TTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAACCACATTCGATATA
* *
842 CGGATTTTTTTTTACGAGCAACTGAATCTTGTTTCGATTTTATTAGAAATTAATTCAGAAAAATG
193 CGGATTTTTTTTTACGAGTAACTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAATG
* *
907 GGAAAACGATATTTAGAAGCGTGAGAATCCCGTCAATCTTTTTGGCGTTGAATTATTTATTTTTT
258 GGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCTTTTTGGCGTTGAATTATATATTTTTT
* * *
972 TTGAGTAATTTTGCAAAAAATTGAGAAAAAAATTTTCGGGTCAGTTTTTAGCCGAAATCGTGTAC
323 CTGAGT-ATTTTGCAAAAAATTGAGAAAAAAATTTTCCGGTAAGTTTTTAGCCGAAATCGTGTAC
*** * * * *
1037 TAACCATCACTATTTTTTTGGCAAAAATCGTGTTTCGGAGCCCGGATCAATTTTACATGATTTTG
387 TAACCATCACGGGTTTTTTGGCAAAAAACGCGTTTCGAAGCCCGGCTCAATTTTACATGATTTTG
*
1102 GGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAACCACACTCGATATACGG
452 GGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAACCACATTCGATATACGG
* *
1167 ATTGGTTTTTACGAGTAACTGAATCTTTTTTCGATTTAATTAGAAATTAATT-AAAAAAAGGGAA
517 ATTTGTTTTTACGAGTAACTGAATCTTGTTTCGATTTAATTAGAAATTAATTGAAAAAAAGGGAA
* * * *
1231 AACGATTTTTCGAAGCGTGAAAATCCCTTCAATCTTTTTGGCGTTGAGTTATATATTT
582 AACGATATTTAGAAGCGTGAAAATCCCGTCAATCTTTTTGGCGTTGAATTATATATTT
* **
1289 TTTCTGAGTATTGTTGCAAAAAATTGAGAAAAAAAA-TTTCGGGTCAGTTTTTAGTCGAAATTTT
1 TTTCTGAGTATTGTTGCAAAAAATTGA-AAAAAAAATTTTCGGGTCAGTTTTTAGCCGAAATCGT
* * *
1353 GTACTAACCAACACAGTTTTTTGG-AAAAAACGCGTTTCAGAGCCCGGCTCAATTTTACATGATT
65 GTACT-A-CATCACAGTTTTTTGGCAAAAAACGCGTTTCGGAACCCGGCTCAATTTTACATGATT
1417 TTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAACCACATTCGATATA
128 TTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAACCACATTCGATATA
* * * * **
1482 CGGATTTGTTTTTACGAGTAACTGAATCTTG-TTCGATTTAATTAGAAATGAATTAAAAAAAAAA
193 CGGATTTTTTTTTACGAGTAACTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAATG
*
1546 GGAAAACGATATTTAGAAGCGTGAAAATCCCTTCAATCTTTTTGGCGTTGAATTATATA-TTTTT
258 GGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCTTTTTGGCGTTGAATTATATATTTTTT
* * *
1610 CTGATTATTATTCCAAAAAATTGAGAAAAAAATTTTCCGGTAAGTTTTTAACCGAAATCGTGTAC
323 CTGAGTATT-TTGCAAAAAATTGAGAAAAAAATTTTCCGGTAAGTTTTTAGCCGAAATCGTGTAC
*
1675 TAACCATCACGGGTTTTTTTTGGCAAAAAACGCGTTTC-AGAGCCCGGCTCAATTTTATATGATT
387 TAACCATCACGGG--TTTTTTGGCAAAAAACGCGTTTCGA-AGCCCGGCTCAATTTTACATGATT
* * *
1739 TTAGGCGCAAAGACTCCTTGAAATATCTATATTCATTTAACCAAATCTGAACCACATTCGATATA
449 TTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAACCACATTCGATATA
* * * *
1804 CGGATTT-TTTTTACGAGCAACTGAATCTTGTTTCGAGTTAATTAGAAATTAATTCGGAAAAATG
514 CGGATTTGTTTTTACGAGTAACTGAATCTTGTTTCGATTTAATTAGAAATTAATT-GAAAAAAAG
* * * *
1868 GGAAAACGATATTTAGAAGCGTGAGAATCCCGTCAATATTATTGGCGTTGAATTATTTATTT
578 GGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCTTTTTGGCGTTGAATTATATATTT
* * *
1930 TTTCTGAGTATTTTTGCAAAAAATTGACAAAAAAAATTTTCCGGTTAGTTTTTAGCCGAAAATCG
1 TTTCTGAGTATTGTTGCAAAAAATTGA-AAAAAAAATTTTCGGGTCAGTTTTTAGCCG-AAATCG
* ** *
1995 TGTACTAACCATCACAGTGTTTTTGGCAAAAATCGCGTTTCGGAATTCGGCTCAATTGTACATGA
64 TGTACT-A-CATCACAGT-TTTTTGGCAAAAAACGCGTTTCGGAACCCGGCTCAATTTTACATGA
2060 TTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAACCACATTCGATA
126 TTTTGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAACCACATTCGATA
* * * *
2125 TAAGGATTTTTTTTTACGAGTAATTGAATCTTGTTTCGATTTAACTAGAAATTAATTCGGAAAAA
191 TACGGATTTTTTTTTACGAGTAACTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAA
* *
2190 TGGGAAAACGATATTTAGAAGCGTGAAAATCACGTCAATCTTTTTGGGGTTGAATTATATATTTT
256 TGGGAAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCTTTTTGGCGTTGAATTATATATTTT
* * * *
2255 TTCTGAGTATTGTTGCAAAAGATTGAGAAAAAAATTTTCCGATCAG-TTTTAGCCGAAATCATGT
321 TTCTGAGTATT-TTGCAAAAAATTGAGAAAAAAATTTTCCGGTAAGTTTTTAGCCGAAATCGTGT
2319 ACTAACCATCAC-GGTTTTTTGGCAAAAAACGCGTTTCGAAGCCCGGCTCAATTTTACATGATTT
385 ACTAACCATCACGGGTTTTTTGGCAAAAAACGCGTTTCGAAGCCCGGCTCAATTTTACATGATTT
* * *
2383 TGGGCACAAAGACTCCTTGAAATATCTATATTCATCTAACTAAATCTCAACCACATTAGATATAC
450 TGGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAACCACATTCGATATAC
* * *
2448 GGATTTGTTTTTATGAGTAACTGAATCTT-ATTCGATTTAATTAGAAATTAATTAAAAAAAAGGG
515 GGATTTGTTTTTACGAGTAACTGAATCTTGTTTCGATTTAATTAGAAATTAATTGAAAAAAAGGG
*
2512 AAAACGATATTTAGAAGCGTGAAAATCCCTTCAATCTTTTTGGCGTTGAATTATAT-TTT
580 AAAACGATATTTAGAAGCGTGAAAATCCCGTCAATCTTTTTGGCGTTGAATTATATATTT
* * * * *
2571 TTTCTGAGTATTGTTGCAAAAAATTTAGAAAAAAATTTCCGGGTTAGTTTTTAGCCGAAA--GCG
1 TTTCTGAGTATTGTTGCAAAAAATTGAAAAAAAAATTTTCGGGTCAGTTTTTAGCCGAAATCGTG
2634 ---T-CATCACAGTTTTTTGG-AAAAAACGCGTTTC-GAAGCCCGGCTCAATTTTACATGATTTT
66 TACTACATCACAGTTTTTTGGCAAAAAACGCGTTTCGGAA-CCCGGCTCAATTTTACATGATTTT
* * * * *
2693 GGGCGCAAAGACTCCTTGAATTATCTATATTCATCTAACTATATCTCAACCCCATTCGATATAAG
130 GGGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAACCACATTCGATATACG
2758 GATTTTCTTTTTACGAGTA
195 GATTTT-TTTTTACGAGTA
2777 TGATGAACCA
Statistics
Matches: 1939, Mismatches: 160, Indels: 70
0.89 0.07 0.03
Matches are distributed among these distances:
628 3 0.00
629 101 0.05
630 19 0.01
631 9 0.00
634 1 0.00
637 5 0.00
638 71 0.04
639 188 0.10
640 359 0.19
641 156 0.08
642 204 0.11
643 509 0.26
644 32 0.02
645 129 0.07
646 110 0.06
647 43 0.02
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (639 bp):
TTTCTGAGTATTGTTGCAAAAAATTGAAAAAAAAATTTTCGGGTCAGTTTTTAGCCGAAATCGTG
TACTACATCACAGTTTTTTGGCAAAAAACGCGTTTCGGAACCCGGCTCAATTTTACATGATTTTG
GGCGCAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAACCACATTCGATATACGG
ATTTTTTTTTACGAGTAACTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAATGGGA
AAACGATATTTAGAAGCGTGAAAATCCCGTCAATCTTTTTGGCGTTGAATTATATATTTTTTCTG
AGTATTTTGCAAAAAATTGAGAAAAAAATTTTCCGGTAAGTTTTTAGCCGAAATCGTGTACTAAC
CATCACGGGTTTTTTGGCAAAAAACGCGTTTCGAAGCCCGGCTCAATTTTACATGATTTTGGGCG
CAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAACCACATTCGATATACGGATTT
GTTTTTACGAGTAACTGAATCTTGTTTCGATTTAATTAGAAATTAATTGAAAAAAAGGGAAAACG
ATATTTAGAAGCGTGAAAATCCCGTCAATCTTTTTGGCGTTGAATTATATATTT
Done.