Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01014581.1 Corchorus olitorius cultivar O-4 contig14614, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132496
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
Found at i:193 original size:25 final size:24
Alignment explanation
Indices: 152--203 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 24
142 GTGGATTGGA
152 AAATAAATTGAAAAATTAAGACATT
1 AAATAAATTGAAAAATTAA-ACATT
* *
177 AAATAAATTTAAGAATTAAACATT
1 AAATAAATTGAAAAATTAAACATT
201 AAA
1 AAA
204 AATTTCAAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 8 0.32
25 17 0.68
ACGTcount: A:0.62, C:0.04, G:0.06, T:0.29
Consensus pattern (24 bp):
AAATAAATTGAAAAATTAAACATT
Found at i:16359 original size:3 final size:3
Alignment explanation
Indices: 16351--16375 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
16341 TTTCTTTCTT
16351 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
16376 ATTTTCAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:52365 original size:2 final size:2
Alignment explanation
Indices: 52360--52389 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
52350 AAACAATTTT
52360 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
52390 AAAGAACAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:52734 original size:155 final size:155
Alignment explanation
Indices: 52452--52756 Score: 583
Period size: 155 Copynumber: 2.0 Consensus size: 155
52442 AAAGGAGAGA
* *
52452 GGATAGGGATGAAGTTGCTTGCCATTATAATAAAACCATGTTTCTTATCATTTGAACCCAAGATC
1 GGATAGGGATGAAGTTGCTTGCCATTATAATAAAACCATATCTCTTATCATTTGAACCCAAGATC
52517 AGTACTCCAAGTAGGTACTGCTAGGCCCTATAAACTAAAGGTTTTCACAGTTATGCTATATTAAG
66 AGTACTCCAAGTAGGTACTGCTAGGCCCTATAAACTAAAGGTTTTCACAGTTATGCTATATTAAG
*
52582 AAGACAAAGGAATAAACCCTGTTTG
131 AAGAAAAAGGAATAAACCCTGTTTG
52607 GGATAGGGATGAAGTTGCTTGCCATTATAATAAAACCATATCTCTTATCATTTGAACCCAAGATC
1 GGATAGGGATGAAGTTGCTTGCCATTATAATAAAACCATATCTCTTATCATTTGAACCCAAGATC
52672 AGTACTCCAAGTAGGTACTGCTAGGCCCTATAAACTAAAGGTTTTCACAGTTATGCTATATTAAG
66 AGTACTCCAAGTAGGTACTGCTAGGCCCTATAAACTAAAGGTTTTCACAGTTATGCTATATTAAG
52737 AAGAAAAAGGAATAAACCCT
131 AAGAAAAAGGAATAAACCCT
52757 ATTCGGGTTT
Statistics
Matches: 147, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
155 147 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (155 bp):
GGATAGGGATGAAGTTGCTTGCCATTATAATAAAACCATATCTCTTATCATTTGAACCCAAGATC
AGTACTCCAAGTAGGTACTGCTAGGCCCTATAAACTAAAGGTTTTCACAGTTATGCTATATTAAG
AAGAAAAAGGAATAAACCCTGTTTG
Found at i:56855 original size:7 final size:7
Alignment explanation
Indices: 56843--56868 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
56833 ATGTATAGGT
56843 AAAAATA
1 AAAAATA
56850 AAAAATA
1 AAAAATA
56857 AAAAATA
1 AAAAATA
56864 AAAAA
1 AAAAA
56869 GGCAGCTTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAATA
Found at i:60700 original size:18 final size:18
Alignment explanation
Indices: 60673--60707 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
60663 AAGAAGTATT
* *
60673 TGACGGCGATGATGATGA
1 TGACGCCGATGAAGATGA
60691 TGACGCCGATGAAGATG
1 TGACGCCGATGAAGATG
60708 TGTGACTTCG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.37, T:0.20
Consensus pattern (18 bp):
TGACGCCGATGAAGATGA
Found at i:62318 original size:11 final size:11
Alignment explanation
Indices: 62304--62341 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
62294 ATTCATAACA
62304 AATTTATAATT
1 AATTTATAATT
62315 AATTTATAATT
1 AATTTATAATT
62326 -ATTTGATAATT
1 AATTT-ATAATT
*
62337 TATTT
1 AATTT
62342 TATATAGGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 4 0.16
11 17 0.68
12 4 0.16
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (11 bp):
AATTTATAATT
Found at i:62640 original size:3 final size:3
Alignment explanation
Indices: 62632--62669 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
62622 ACAGAAAATT
62632 ATA ATA ATA ATA ATA ATA ATA ATA AT- ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
62670 GTACGTATGG
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 32 0.94
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:66998 original size:66 final size:66
Alignment explanation
Indices: 66921--67051 Score: 253
Period size: 66 Copynumber: 2.0 Consensus size: 66
66911 AATGTCTTTG
66921 GATTAACTTAATTCTTTGTTTATTATAACCTTTAGTAATAATCAAATTGATAATTTCTTATTAAT
1 GATTAACTTAATTCTTTGTTTATTATAACCTTTAGTAATAATCAAATTGATAATTTCTTATTAAT
66986 T
66 T
*
66987 GATTAACTTAATTCTTTGTTTATTATAACCTTTAGTAATAATCAAATTGATCATTTCTTATTAAT
1 GATTAACTTAATTCTTTGTTTATTATAACCTTTAGTAATAATCAAATTGATAATTTCTTATTAAT
67052 CGAAAAATTG
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
66 64 1.00
ACGTcount: A:0.34, C:0.10, G:0.06, T:0.50
Consensus pattern (66 bp):
GATTAACTTAATTCTTTGTTTATTATAACCTTTAGTAATAATCAAATTGATAATTTCTTATTAAT
T
Found at i:67182 original size:12 final size:13
Alignment explanation
Indices: 67162--67194 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
67152 ATGGGTTCAG
67162 TAGTTTGTTTATT
1 TAGTTTGTTTATT
*
67175 TA-TTTGTTTGTT
1 TAGTTTGTTTATT
67187 TAGTTTGT
1 TAGTTTGT
67195 AATTAGTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.12, C:0.00, G:0.18, T:0.70
Consensus pattern (13 bp):
TAGTTTGTTTATT
Found at i:74283 original size:2 final size:2
Alignment explanation
Indices: 74278--74307 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
74268 GATATGATGA
74278 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
74308 CCATCCTTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:74771 original size:2 final size:2
Alignment explanation
Indices: 74766--74802 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
74756 CACATTGATC
74766 AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
74803 CTTTTGGAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:75437 original size:28 final size:29
Alignment explanation
Indices: 75405--75460 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 29
75395 TAATGAAATT
75405 TCAATTGTA-CTTAGAAAAA-AAAATGTTA
1 TCAATTGTATCTT-GAAAAAGAAAATGTTA
75433 TCAATTGTATTCTTGAAAAAGAAAATGT
1 TCAATTGTA-TCTTGAAAAAGAAAATGT
75461 GGATCACAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
28 9 0.36
29 6 0.24
30 10 0.40
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.34
Consensus pattern (29 bp):
TCAATTGTATCTTGAAAAAGAAAATGTTA
Found at i:76596 original size:2 final size:2
Alignment explanation
Indices: 76589--76634 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
76579 CATACTCCTC
76589 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
76631 AT AT
1 AT AT
76635 GGCATTTTAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:76940 original size:18 final size:18
Alignment explanation
Indices: 76903--76940 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
76893 ATGTGTGAAA
*
76903 AAAATTATAATTAATTAT
1 AAAATTATAATTAATAAT
76921 AAAATTAT-ATTCAATAAT
1 AAAATTATAATT-AATAAT
76939 AA
1 AA
76941 TATCCTAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 3 0.17
18 15 0.83
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (18 bp):
AAAATTATAATTAATAAT
Found at i:84037 original size:2 final size:2
Alignment explanation
Indices: 84030--84063 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
84020 GAATCCCAGC
84030 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
84064 TGTTAACGTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:101217 original size:17 final size:17
Alignment explanation
Indices: 101195--101231 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
101185 ATTCGAAATC
*
101195 AAATCGTTTCAGACTCT
1 AAATCGTGTCAGACTCT
*
101212 AAATCGTGTCAGATTCT
1 AAATCGTGTCAGACTCT
101229 AAA
1 AAA
101232 CATAAGCTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.32
Consensus pattern (17 bp):
AAATCGTGTCAGACTCT
Found at i:102384 original size:62 final size:62
Alignment explanation
Indices: 102313--102430 Score: 218
Period size: 62 Copynumber: 1.9 Consensus size: 62
102303 TTAAGCAAGG
*
102313 TTTCGTGTTCGAGTTCTATGAATAGAGAAAATTATTATTGGGAGAGCTTTACCCATGATTGC
1 TTTCGTGTTCGAGTCCTATGAATAGAGAAAATTATTATTGGGAGAGCTTTACCCATGATTGC
*
102375 TTTCGTGTTCGAGTCCTATGAATGGAGAAAATTATTATTGGGAGAGCTTTACCCAT
1 TTTCGTGTTCGAGTCCTATGAATAGAGAAAATTATTATTGGGAGAGCTTTACCCAT
102431 AGTGGGCTAA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
62 54 1.00
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.36
Consensus pattern (62 bp):
TTTCGTGTTCGAGTCCTATGAATAGAGAAAATTATTATTGGGAGAGCTTTACCCATGATTGC
Found at i:102601 original size:43 final size:43
Alignment explanation
Indices: 102540--102625 Score: 120
Period size: 43 Copynumber: 2.0 Consensus size: 43
102530 AGGATTTGCA
* * *
102540 TACACAGCTGCTCTGTTAATAGACTCATTCAGCAAACCCAGAT
1 TACACAGCCGCTCTGTTAATAGACTCACTCACCAAACCCAGAT
*
102583 TACACAGCCGC-CTTGTTAATAGACTCACTCACCATACCCAGAT
1 TACACAGCCGCTC-TGTTAATAGACTCACTCACCAAACCCAGAT
102626 GCACGGTGCG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
42 1 0.03
43 37 0.97
ACGTcount: A:0.31, C:0.31, G:0.13, T:0.24
Consensus pattern (43 bp):
TACACAGCCGCTCTGTTAATAGACTCACTCACCAAACCCAGAT
Found at i:103481 original size:22 final size:23
Alignment explanation
Indices: 103456--103498 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
103446 AAAAAACATA
*
103456 AAAAGAAAAAAAGAA-TACTTCT
1 AAAAGAAAAAAACAATTACTTCT
*
103478 AAAAGAAGAAAACAATTACTT
1 AAAAGAAAAAAACAATTACTT
103499 GGTTCAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.63, C:0.09, G:0.09, T:0.19
Consensus pattern (23 bp):
AAAAGAAAAAAACAATTACTTCT
Found at i:104229 original size:13 final size:13
Alignment explanation
Indices: 104208--104244 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
104198 GATAATTCTT
104208 TTTGACCCTCCAA
1 TTTGACCCTCCAA
*
104221 TTTGTCCCTCCAA
1 TTTGACCCTCCAA
*
104234 CTTGACCCTCC
1 TTTGACCCTCC
104245 TAATAATTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.16, C:0.43, G:0.08, T:0.32
Consensus pattern (13 bp):
TTTGACCCTCCAA
Found at i:104306 original size:41 final size:41
Alignment explanation
Indices: 104243--104323 Score: 126
Period size: 41 Copynumber: 2.0 Consensus size: 41
104233 ACTTGACCCT
* *
104243 CCTAATAATTAAGGAAATAAATTAAATCCAGGTTTAGCCCC
1 CCTAATAATTAAGGAAAGAAATTAAATCCAGATTTAGCCCC
* *
104284 CCTAATAATTAAGGTAAGAAATTAAATTCAGATTTAGCCC
1 CCTAATAATTAAGGAAAGAAATTAAATCCAGATTTAGCCC
104324 TTAGTTATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.28
Consensus pattern (41 bp):
CCTAATAATTAAGGAAAGAAATTAAATCCAGATTTAGCCCC
Found at i:104445 original size:13 final size:13
Alignment explanation
Indices: 104427--104451 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
104417 CACGTCAAGA
104427 GGGACAAATTGGT
1 GGGACAAATTGGT
104440 GGGACAAATTGG
1 GGGACAAATTGG
104452 AGGGTCATGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.40, T:0.20
Consensus pattern (13 bp):
GGGACAAATTGGT
Found at i:112148 original size:14 final size:14
Alignment explanation
Indices: 112129--112155 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
112119 ATAGTGTAGA
112129 AAGACATTTCAATG
1 AAGACATTTCAATG
112143 AAGACATTTCAAT
1 AAGACATTTCAAT
112156 CTCAATTTGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.15, G:0.11, T:0.30
Consensus pattern (14 bp):
AAGACATTTCAATG
Found at i:118474 original size:2 final size:2
Alignment explanation
Indices: 118469--118493 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
118459 TGTGTGTGTC
118469 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
118494 GATTAAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:119795 original size:331 final size:329
Alignment explanation
Indices: 118594--123435 Score: 3783
Period size: 331 Copynumber: 14.5 Consensus size: 329
118584 CCATGATGGT
* * * * * * *
118594 AAAAA-TGACCCGAAAGATTTTTCCTCAATTCTTGTCAAAAATACCCATTAAAAATATATAATTC
1 AAAAATTGATCCGAAA-A-TTTTCCTCAATTTTTGGCCACAATACTCA-TAAAAAAATATAATTC
* * * * * * * *
118658 AATGCCAAAAAGATTGGAGGACTTGTCACGCTTTTAGTATCGTTTTTCATA-TTTTTTCAGAATT
63 AAAGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCTATTTTTTTCTGAATT
* * * *
118722 AATTTCCAATTAAAT-GAAACAAGATTCAGATGCACGTAAAAATAAATCCTTAAATCCAATGTGG
128 AATTTCTAATTAAATCGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGG
* * * *
118786 CTGAGATTTGATTAGATGAATAAAG-ATATTTTAAGGAGT-TTCGGCACAAAAAATCATGCAAAA
193 CTGAGATTTGGTTAGATGAATATAGAATATTTCAAGGAGTCTT-GGCGCAAAAAATCATGCAAAA
** ** * * * * ** *
118849 CAAAGTCATGGCC-CTGGAACGCGTTTTTAGCCAAAAACCGTGATGATTTTACACAATTTCGGCT
257 CTGAGTCGGGGCCTC-GAAACGCGTTTTTAGCTAAAAA-AGCGATGATAGTACACGATTTCGGCT
*
118913 AAAATATTGC
320 AAAATTTTGC
* * * * * *
118923 AAAAATTGACCCGAAAGATAATTCCTCAATTTTT-GCTAAAATACTCATAAAAATATATAATTTG
1 AAAAATTGATCCGAAA-AT-TTTCCTCAATTTTTGGCCACAATACTCATAAAAAAATATAA-TTC
* * * *
118987 ACA-TCAAAAAGATTGAAGGGCTTTTAACGCTTCTAATATTGTTTTTCCTA-TTTTTTCTGAATT
63 AAAGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCTATTTTTTTCTGAATT
* * *
119050 AATTTCTAATTAAATCGAAATAAGATTCAGATGCTCATAAAAACAAATCCTTAAATCCAATGTGG
128 AATTTCTAATTAAATCGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGG
* * *
119115 CTGGGATTTGGTCAGATGAATATAG-ATATTTCAAGGAGTCTTGGCACAAAAAATCATGCAAAAC
193 CTGAGATTTGGTTAGATGAATATAGAATATTTCAAGGAGTCTTGGCGCAAAAAATCATGCAAAAC
* * * * * *** * *
119179 TGAG-CAGGGCCCCGGAACGGGTTTTTAGCCGAAATCTGTGATGATTAGTATACGATTTCGGCTA
258 TGAGTCGGGGCCTCGAAACGCGTTTTTAG-CTAAAAAAGCGATGA-TAGTACACGATTTCGGCTA
119243 AAATTTTGC
321 AAATTTTGC
* * * * * *
119252 AAAAA-T-AACCAGAAAGATTTTTCCTCAAATTCTAGCGAAAATACTCATAAAAAATATATAATT
1 AAAAATTGATCC-GAAA-A-TTTTCCTCAATTTTTGGCCACAATACTCATAAAAAA-ATATAATT
* * * * * **
119315 CAACA-CCAAAAAAATTGAAAGTCTTTTTTACGCTTCTAATATCGTTTTTCCTATTTTCATTCCA
62 CAA-AGCCAAAAAGATTGAAGGGC-TTTTCACGCTTCTAATATCGTTTTTCCTATTTT-TTTCTG
* * * * * * * *
119379 AATTAATTGCTGATTAAATCGAAATAAGATTTAGATACTCTTAAAAACAAATCCTTAAATACAAT
124 AATTAATTTCTAATTAAATCGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAAT
* * * * *
119444 GTGACTGATATTTCGTTAGATGAATATAGATATATTTTAAGGAGTCTTGGCGGAAAAAATCATGC
189 GTGGCTGAGATTTGGTTAGATGAATATAGA-ATATTTCAAGGAGTCTTGGCGCAAAAAATCATGC
* ** * * *
119509 AAAACTAACCCGGGGCCTTGGAACGCGGTTTTAGCTAAAAAAGCG-TGATAGTACACGATTTCGG
253 AAAACTGAGTCGGGGCCTCGAAACGCGTTTTTAGCTAAAAAAGCGATGATAGTACACGATTTCGG
119573 CTAAAAATTTTGC
318 CT-AAAATTTTGC
* * * * * *
119586 AAAAA-TGTTCCGAATTATTTTTCT-AATTTTTAGCCACAATACTCACAAAAAAAAATAATTCAA
1 AAAAATTGATCCGAA-AATTTTCCTCAATTTTTGGCCACAATACTCATAAAAAAATATAATTCAA
* * * * *
119649 TGCCAAAAAGATTAAAGGGCTTCTCACGCTTCCAATATCGTTTTTCCTATTTTTTTC-AAATTAA
65 AGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCTATTTTTTTCTGAATTAA
* * *
119713 TTTCTAATTAAATTGAAACATGATTCAAATGCTCGTAAAAAAAAAAAATCCTTAAATCCAATGTG
130 TTTCTAATTAAATCGAAACATGATTCAGATGCTCGT---AAAAACAAATCCTTAAATCCAATGTG
* * **** * *
119778 GCTAAGATTTGGTTAGATGAATATA-AATATTTCAAGGAGTTTTAAAACCAAAAACCATGCAAAA
192 GCTGAGATTTGGTTAGATGAATATAGAATATTTCAAGGAGTCTTGGCGCAAAAAATCATGCAAAA
* * * * * * * *
119842 CTGA-CCTGGGGCCCCGAAATGCGATTTTTTAGCCAAAAAAACCG-TGTTGGTACACGATTTCGA
257 CTGAGTC-GGGGCCTCGAAACGCG--TTTTTAG-CTAAAAAAGCGATGATAGTACACGATTTCGG
* *
119905 CAAAAATTTTAC
318 CTAAAATTTTGC
* * *
119917 AAAAATTGA-CCTG---ATTTTCCTCAATTTTTAGCCACAATACTCACAAAATATATATAATTCA
1 AAAAATTGATCC-GAAAATTTTCCTCAATTTTTGGCCACAATACTCATAAAA-AAATATAATTCA
* * * * * * **
119978 ACTG-AAAAAAGATTGGAGGACTTTTCACGCTTTTAATATCGTTTTT-C-ATATTTTTCAAAATT
64 A-AGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCTATTTTTTTCTGAATT
* *
120040 AATTT-TAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATGCAATGTGG
128 AATTTCTAATTAAATCGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGG
* * * *
120104 CTGAGATTTTGATTAGATAAATATAG-ATATTTCAAGGAGTCTCGACGTC-AAAAATCATGCAAA
193 CTGAGA-TTTGGTTAGATGAATATAGAATATTTCAAGGAGTCTTGGCG-CAAAAAATCATGCAAA
* * * ** * * * ***
120167 ACTGAGTCGGGGCCCCGAAACGCATTATTAGGAAAAAAACTGTGATGGTTGTACACGATTTTTAC
256 ACTGAGTCGGGGCCTCGAAACGCGTTTTTAGCTAAAAAA--GCGATGATAGTACACGATTTCGGC
*
120232 TAAAATTTTAC
319 TAAAATTTTGC
* * * ** * ** * *
120243 AAAAAATGA-CCTGAAAAGTTTTTCTTAATTTTTGGAAAAAATACTCATGAATTATATATAATTT
1 AAAAATTGATCC-GAAAA-TTTTCCTCAATTTTTGGCCACAATACTCAT-AAAAAAATATAATTC
* * * * * * * *
120307 AATGCCAAAAAGATTGGAGGACTTTTCACACTTTTCATATCGTTTTTTC-ATATTTTTCTTG-AT
63 AAAGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCTATTTTTTTC-TGAAT
* * * * * *
120370 TAATGTCTAATTAAATCGAAACAAGATTCGGATGTTCGCAAAAGA-AAATCCTTAAATGCAATGT
127 TAATTTCTAATTAAATCGAAACATGATTCAGATGCTCGTAAAA-ACAAATCCTTAAATCCAATGT
* * *
120434 GCCTGAGATTTGATTAGATGAATAT-GAATATCTCAAGGAGTCTTGGCGCAAAAAATCATGCAAA
191 GGCTGAGATTTGGTTAGATGAATATAGAATATTTCAAGGAGTCTTGGCGCAAAAAATCATGCAAA
* * * * * * **
120498 ACTGACTCGGGG-CTCTGGAACGCATTTTTAGCCAAAAATAGTGATGATTATTACACGATTTCAA
256 ACTGAGTCGGGGCCTC-GAAACGCGTTTTTAGCTAAAAA-AGCGATGA-TAGTACACGATTTCGG
*
120562 CTGAAATTTTGC
318 CTAAAATTTTGC
* * *
120574 AAAAATTGA-CCGAAAAGATATTACCTCAATTTTTGGCTAAAATACTCATAAAAAATATATAATT
1 AAAAATTGATCCG-AAA-AT-TTTCCTCAATTTTTGGCCACAATACTCATAAAAAA-ATATAATT
* * * * * ** *
120638 CAACGCCAAAAATATTGAAGGGTTTTTTACGCTTCTAGTAT--TTTTTTTTA-CTTTTTCTGAAT
62 CAAAGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCTATTTTTTTCTGAAT
* * * * *
120700 TAATTTGTAATTAAATCGAAACAAGATTTATATGCTCGTAAAAACAAATCCTTAAATCCAATGTC
127 TAATTTCTAATTAAATCGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTG
* ** * * *
120765 GCTGAGTTTTTATTAGATGAATATAG-ATATTTCAAGGAGACTTGGTTAGATAAATATAAAT-AT
192 GCTGAGATTTGGTTAGATGAATATAGAATATTTCAAGGAGTCTTGG--CG--CAA-A-AAATCA-
* * ** ** * * * * *** * * * ** **
120828 TTCAAGAAGT-CTTCTTGCCAAAAATCATTCAAAAATGAGTCGGGGT-CCCAAAACA-CTTTTTT
250 TGCAA-AACTGAGTCGGGGC------C--TC-GAAACGCGT--TTTTAGCTAAAAAAGCGATGAT
* * * **
120890 AGCTTAAAACTG-TGAT-GGAAAGTATATGAATTCGGC
303 AG--T-ACAC-GAT-TTCGG---CTA-A--AATTTTGC
*
120926 TAAAATTTTGCTAAATTGATCCGAAAGATTTTTCCTCAATTTTTGGCCACAATTCTCATAAAAAA
1 ---AA-------AAATTGATCCGAAA-A-TTTTCCTCAATTTTTGGCCACAATACTCATAAAAAA
* * * *
120991 ATATAATTCAAAGACAAAAAGATTGAACGG-TTTTCAAAGACTTCTAATATCGTTTTTCCAATTT
54 ATATAATTCAAAGCCAAAAAGATTGAAGGGCTTTTC-ACG-CTTCTAATATCGTTTTTCC--TAT
* * *
121055 TTTTTTCTGAATTAATTTCAAAATAAATGGAAACATGATTCAGATGCTCGTAAAAACAAATCCTT
115 TTTTTTCTGAATTAATTTCTAATTAAATCGAAACATGATTCAGATGCTCGTAAAAACAAATCCTT
* * * * *
121120 AAATCCAAAGTGGCTGAGATTTGGTTAGATGAATATAG-ATAGTTCAAGGAGTCTTCGTGCTAAA
180 AAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGAATATTTCAAGGAGTCTTGGCGCAAAA
* * ** * *
121184 AATCATGCAAAACTTAGTCGGGGCCTCGAAACGCGATTTTAGCTTAAAATCGTGATGGATAGTGC
245 AATCATGCAAAACTGAGTCGGGGCCTCGAAACGCGTTTTTAGC-TAAAAAAGCGAT-GATAGTAC
121249 ACGATTTCGGCTAAAATTTTGC
308 ACGATTTCGGCTAAAATTTTGC
* * * * * *
121271 AAAAATTGATTCAGAAAATTTTCCTCGATTTTTGGTCACAATTCTCATAGACAATATATAATTCA
1 AAAAATTGA-TCCGAAAATTTTCCTCAATTTTTGGCCACAATACTCATA-AAAAAATATAATTCA
* * * * *
121336 AAG--AAAAAAACTTGAAGGGTTTTTCAGGCTTCTAATATCATTTTTCC-ATTTTTTTCTGAAAT
64 AAGCCAAAAAGA-TTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCTATTTTTTTCTGAATT
* * * * *
121398 AATTT-TGAATTAAATAGAAACATGATACAAATGCTCGTAAAAACAAAACCTTAAATCCAAAGTG
128 AATTTCT-AATTAAATCGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTG
* * *
121462 GCTGAGATTTGGTCAGATGAATATA-AATATTTCAAGGAGTCTTTGTGCAAAAAATCATGCAAAA
192 GCTGAGATTTGGTTAGATGAATATAGAATATTTCAAGGAGTCTTGGCGCAAAAAATCATGCAAAA
* * * * * ** * * * *
121526 CTAACTCGGTGTCC-CGAAATGTGTTTTTAGCCTAAAACCGTGATGGAAAGTATACGATTTCTGC
257 CTGAGTCGG-GGCCTCGAAACGCGTTTTTAG-CTAAAAAAGCGAT-GATAGTACACGATTTCGGC
121590 TAAAATTTTGC
319 TAAAATTTTGC
* * * * * *
121601 AAAATTTGATCCGGAAAATTTTTCCTCAATTTTGGGCCTCAACT-CTCATAATATATATATAACT
1 AAAAATTGATCC-GAAAA-TTTTCCTCAATTTTTGGCCACAA-TACTCATAA-AAAAATATAATT
* * * * * *
121665 CAAATCCAAAAAGATCGAAAGGTTTTTCACGCTTTTAATATCGTTTTTCC-AATTTTTTCTGAAT
62 CAAAGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCTATTTTTTTCTGAAT
* * *
121729 TAATTTC-AAATAATATCGAAACATGATTC-GATGGTCGTAAAAACAAATCCTTAAATCCAAAGT
127 TAATTTCTAATTAA-ATCGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGT
* * * * * * *
121792 GGCTGAGATTTGGTGAGATGAAGAAAG-ATAGTTCAAGGAGTCTTCGTGCTAAAAATCATGCAAA
191 GGCTGAGATTTGGTTAGATGAATATAGAATATTTCAAGGAGTCTTGGCGCAAAAAATCATGCAAA
* ** * *
121856 ACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCTTAAAATCGTGATGGATAGTGCACGATTTCGGC
256 ACTGAGTCGGGGCCTCGAAACGCGTTTTTAGC-TAAAAAAGCGAT-GATAGTACACGATTTCGGC
121921 TAAAATTTTGC
319 TAAAATTTTGC
* *
121932 AAAAATTGATCCGGAAACTTTTTCCTCAATTTTTGGCCACAATTCTCATAAAAAAATATAATTCA
1 AAAAATTGATCC-GAAA-ATTTTCCTCAATTTTTGGCCACAATACTCATAAAAAAATATAATTCA
* * * * ** * *
121997 AAGACAAATAGATTGAAGGGGTTTTCAGGCTTCTAATATATTTTTTCC-AATTTTTTCTGACTTA
64 AAGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCTATTTTTTTCTGAATTA
* * * *
122061 ATTTCGAATTAAATGGAAATATGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAAAGTGGC
129 ATTTCTAATTAAATCGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGC
* * * * * * **
122126 TGAGATTTGGTCATATGAATATAG-ATAGTTCAAGGAGTCTTTGTGCAAAAAATCGTGCAGTACT
194 TGAGATTTGGTTAGATGAATATAGAATATTTCAAGGAGTCTTGGCGCAAAAAATCATGCAAAACT
* * * * * *** * * * **
122190 AAGTTGGTG-TTCCGAAA--CGTGTTTAGCTTAAAGTCGTGATGGAAAGTATACGATTTATGCTA
259 GAGTCGGGGCCT-CGAAACGCGTTTTTAGC-TAAAAAAGCGAT-GATAGTACACGATTTCGGCTA
122252 AAATTTTGC
321 AAATTTTGC
* *
122261 AAAAATTGATCTGGAGAATTTTTCCTCAATTTTTGGCCACAACT-CTCATAATATATATATATAT
1 AAAAATTGATC-CGA-AAATTTTCCTCAATTTTTGGCCACAA-TACTCAT-A-A-A-A-A-A-AT
* * * * * *
122325 ATAATTAAAAGCCAAAAAGATTGAAGGGTTTTTCACACTTCGAATATCG-TTTTCCCAATTTTTT
56 ATAATTCAAAGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCTATTTTTTT
* * *
122389 CTGAATTAATTTC-AATTAATATCGAAACATGATTC-GGTGGTCGTAAAAACAAATACTTAAATC
121 CTGAATTAATTTCTAATTAA-ATCGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAATC
* * *
122452 CAAAGTGGCTGAGATTTGGTTAGATGAATATA-AATATTTCAAGGAGTCTTTGTGACAAAAAATC
185 CAATGTGGCTGAGATTTGGTTAGATGAATATAGAATATTTCAAGGAGTCTTGGCG-CAAAAAATC
* * * *** * * *
122516 ATGCAAAACTAAGTCGGTGTCC-CGAAACGTGTTTTTAGCTTAAAGCTGTGATGGAAAGTATACG
249 ATGCAAAACTGAGTCGG-GGCCTCGAAACGCGTTTTTAGC-TAAAAAAGCGAT-GATAGTACACG
* *
122580 ATTTCTGTTAAAATTTTGC
311 ATTTCGGCTAAAATTTTGC
* * * *
122599 AAAAATTGATCCGGAAATTTTCCTCAATTTTTGGCCACCACT-CTCATAAAATATATATAATTTA
1 AAAAATTGATCCGAAAATTTTCCTCAATTTTTGGCCA-CAATACTCATAAAA-AAATATAATTCA
* *
122663 AAGCCAAAAAGATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCAATTTTTTTCTGAATTA
64 AAGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCTATTTTTTTCTGAATTA
* * * *
122728 ATTT-TAAATAATATCGAATCATGATT-TGATGGTCGTAAAAACAAATCCTTAAATCCAATGTGG
129 ATTTCTAATTAA-ATCGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGG
* * * *
122791 CTGAGATTTGGTTAGATAAATACA-AATATTTCAAGAAGTCTTCTTGC-CAAAAAA-CATGCAAA
193 CTGAGATTTGGTTAGATGAATATAGAATATTTCAAGGAGTC-T-TGGCGCAAAAAATCATGCAAA
** * * **
122853 ACTGAGTCGGGGCAC-CGAAACGCGTTTTTAGCTTAAAACTGTGATAGAAAGTACACGATTTCAC
256 ACTGAGTCGGGGC-CTCGAAACGCGTTTTTAGC-TAAAAAAGCGAT-GATAGTACACGATTTCGG
*
122917 CTACAATTTTG-
318 CTAAAATTTTGC
* * * *
122928 AAAAATTGATTCGAAAGTTTTTTCCTCAGTTTTTTGCCACAATTA-TCATAAAAAAATATAATTC
1 AAAAATTGATCCGAAA--ATTTTCCTCAATTTTTGGCCACAA-TACTCATAAAAAAATATAATTC
* * * * * * *
122992 AAAGACAAAAAGGTTGAAGGGGTTTTCAGGCTTCTAATAACGTTTTCCCAATTTTTTTCTGAATT
63 AAAGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCTATTTTTTTCTGAATT
* * * * *
123057 AATTTCGAATTAAATGGAAATATGATTCAGATGCTTGTAAAAACAAATCCTTAAATCCAAAGTGG
128 AATTTCTAATTAAATCGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGG
* * * * * *
123122 CTGAGATTTGGTCAGATGAATATA-AACAATTCAAGGAGTCTTCGTGCCAAAAATCATGCAAAAC
193 CTGAGATTTGGTTAGATGAATATAGAATATTTCAAGGAGTCTTGGCGCAAAAAATCATGCAAAAC
* * ** * * * *
123186 TGAGTCGGTGCCTCGAAACGCGTTTTTAGATTAAAATCGAGATGGATAGTGCACAATTTCAGCTA
258 TGAGTCGGGGCCTCGAAACGCGTTTTTAG-CTAAAAAAGCGAT-GATAGTACACGATTTCGGCTA
123251 AAATTTTGC
321 AAATTTTGC
* * * * * *
123260 AAAAATTCATCTGGAAAATTTCTCCTTAATTTTTGGCCACAATTCTCAATGACAATAA-ATAATT
1 AAAAATTGATC-CGAAAATTT-TCCTCAATTTTTGGCCACAATACTC-AT-AAAAAAATATAATT
** ** ** *
123324 CAAAGAAAAAAATCTTGAAGGG-TTATTCGGGCTTTTAATATCGTTTTTCC-ATTTTTTTCTGAA
62 CAAAGCCAAAAAGATTGAAGGGCTT-TTCACGCTTCTAATATCGTTTTTCCTATTTTTTTCTGAA
* *
123387 TTAATTT-TGAATTAAAT-GAAAACATGATACAAATGCTCGTAAAAACAAA
126 TTAATTTCT-AATTAAATCG-AAACATGATTCAGATGCTCGTAAAAACAAA
123436 ATCTTAATTT
Statistics
Matches: 3732, Mismatches: 590, Indels: 379
0.79 0.13 0.08
Matches are distributed among these distances:
323 7 0.00
324 6 0.00
325 31 0.01
326 102 0.03
327 5 0.00
328 202 0.05
329 376 0.10
330 819 0.22
331 898 0.24
332 331 0.09
333 197 0.05
334 70 0.02
335 166 0.04
336 166 0.04
337 6 0.00
338 59 0.02
342 2 0.00
343 3 0.00
344 1 0.00
345 14 0.00
346 10 0.00
347 4 0.00
348 2 0.00
349 1 0.00
350 4 0.00
351 6 0.00
352 16 0.00
353 3 0.00
354 3 0.00
355 3 0.00
360 7 0.00
361 40 0.01
362 54 0.01
363 5 0.00
364 5 0.00
365 1 0.00
366 1 0.00
367 106 0.03
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (329 bp):
AAAAATTGATCCGAAAATTTTCCTCAATTTTTGGCCACAATACTCATAAAAAAATATAATTCAAA
GCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCTATTTTTTTCTGAATTAAT
TTCTAATTAAATCGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTG
AGATTTGGTTAGATGAATATAGAATATTTCAAGGAGTCTTGGCGCAAAAAATCATGCAAAACTGA
GTCGGGGCCTCGAAACGCGTTTTTAGCTAAAAAAGCGATGATAGTACACGATTTCGGCTAAAATT
TTGC
Found at i:122772 original size:997 final size:993
Alignment explanation
Indices: 118642--123442 Score: 3991
Period size: 997 Copynumber: 4.8 Consensus size: 993
118632 AAATACCCAT
* * * * * * * *
118642 TAAAA-ATATATAATTCAATGCCAAAAAGATTG-GAGGACTTGTCACGCTTTTAGTATCGTTTTT
1 TAAAATATATATAACTCAAAGCCAAAAAGATCGAAAGG-TTTTTCACGCTTCTAATATCGTTTTT
* * * ** *
118705 -CATATTTTTTCAGAATTAATTTCCAATTAA-AT-GAAACAAGATTCAGATGCACGTAAAAATAA
65 CCA-ATTTTTTCTGAATTAATTT-CAAATAATATCGAAACATGATTC-GATGGTCGTAAAAACAA
* * * * * * * * *
118767 ATCCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATA-AAGATATTTTAAGGAGT-TTC-G
127 ATCCTTAAATCCAAAGTGGCTGAGATTTGGTGAGATAAAGACAA-ATAGTTCAAGAAGTCTTCTT
** ** * * ** *
118829 GCACAAAAAATCATGCAAAACAAAGTCATGGCCCTGGAACGCGTTTTTAGCCAAAAACCGTGAT-
191 GC-C-AAAAATCATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCTTAAAACTGTGATG
*** * * * **
118893 GATTTTACACAATTTCGGCTAAAATATTGCAAAAATTGACCCGAAAGATAATTCCTCAATTTTT-
254 GAAAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGATCCGAAAGATTTTTCCTCAATTTTTG
* * * * * * * * * *
118957 GCTAAAATACTCATAAAAATATATAATTTGACA-TCAAAAAGATTGAAGGGCTTTTAACGCTTCT
319 GCCACAATTCTCATAAAAAAATATAA-TTCAAAGACAAAAAGATTGAAGGGGTTTTCAGGCTTCT
* * * * *
119021 AATATTGTTTTTCCTA-TTTTTTCTGAATTAATTTCTAATTAAATCGAAATAAGATTCAGATGCT
383 AATATAGTTTTTCCAATTTTTTTCTGAATTAATTTCGAATTAAATGGAAATATGATTCAGATGCT
* * * *
119085 CATAAAAACAAATCCTTAAATCCAATGTGGCTGGGATTTGGTCAGATGAATATAGATATTTCAAG
448 CGTAAAAACAAATCCTTAAATCCAAAGTGGCTGAGATTTGGTCAGATGAATATAGATAGTTCAAG
* ** * * * * **
119150 GAGTCTTGGCACAAAAAATCATGCAAAACTGAG-CAGG-GCCCCGGAACGGGTTTTTAGC-CGAA
513 GAGTCTTCGTGCAAAAAATCATGCAAAACTAAGTC-GGTGCCTCGAAAC--GTGTTTAGCTTAAA
** * * ** *
119212 ATCTGTGAT-GATTAGTATACGATTTCGGCTAAAATTTTGCAAAAA-T-AACCAGAAAGATTTTT
575 ATC-GTGATGGA-TAGTGCACGATTT-AGCTAAAATTTTGCAAAAATTGATCTGGAGA-ATTTTT
* * * * * * **
119274 CCTCAAATTCTAGCGAAAATACTCAT-A-A-AAAATATATAATTCAACACCAAAAAAA-TTGAAA
636 CCTCAATTTTTGGCCACAAT-CTCATCATAGACAATATATAATT-AA-AAGAAAAAAACTTG-AA
** * * * * * * * * *
119335 GTCTTTTTTACGCTTCTAATATCGTTTTTCCTATTTTCATTC-CAAATTAA-TTGCTGATTAAAT
697 GGGTTTTTCACACTTCGAATATCATTTTCCCAATTTT--TTCTGAAA-TAATTTTC-AATTAAAT
* * * ** * * * * * * * * * *
119398 CGAAATAAGATTTAGATACTCTTAAAAACAAATCCTTAAATACAATGTGACTGATATTTCGTTAG
758 AGAAACATGATACAAATGCTCGTAAAAACAAAACCTTAAATCCAAAGTGGCTGAGATTTGGTCAG
* * * * * *
119463 ATGAATATAGATATATTTTAAGGAGTCTTGGCGGAAAAAATCATGCAAAACTAACCCGG-GGCCT
823 ATGAATATA-A-ATATTTCAAGGAGTCTTTGTGCAAAAAATCATGCAAAACTAACTCGGTGTCC-
* * * * ** * * * *
119527 TGGAACGCGGTTTTAG-CTAAAAAAGCG-T-GATAGTACACGATTTCGGCTAAAAATTTTGCAAA
885 CGAAACGTGTTTTTAGCCTAAAACCGTGATGGAAAGTATACGATTTCTGCT-AAAATTTTGCAAA
* * **
119589 AA-TGTTCC-GAATTATTTTT-CT-AATTTTTAGCCACAA-TACTCA
949 AATTGATCCGGAA-AATTTTTCCTCAATTTTGGGCCACAACT-CTCA
* * * * * * * * *
119631 CAAAA-AAAAATAATTCAATGCCAAAAAGAT-TAAAGGGCTTCTCACGCTTCCAATATCGTTTTT
1 TAAAATATATATAACTCAAAGCCAAAAAGATCGAAA-GGTTTTTCACGCTTCTAATATCGTTTTT
* * * * * *
119694 CCTATTTTTT-TCAAATTAATTTCTAATTAA-ATTGAAACATGATTCAAATGCTCGTAAAAAAAA
65 CCAATTTTTTCT-GAATTAATTTC-AAATAATATCGAAACATGATTC-GATGGTCGT---AAAAA
* * * * * * * * * * *
119757 AAAATCCTTAAATCCAATGTGGCTAAGATTTGGTTAGATGAATATAAATATTTCAAGGAGTTTTA
124 CAAATCCTTAAATCCAAAGTGGCTGAGATTTGGTGAGATAAAGACAAATAGTTCAAGAAGTCTTC
*** * * * ** *
119822 AAACCAAAAACCATGCAAAACTGA-CCTGGGGCCCCGAAATGCGATTTTTTAGCCAAAAAAACCG
189 TTGCCAAAAATCATGCAAAACTGAGTC-GGGGCCCCGAAACGCG--TTTTTAG-C-TTAAAACTG
* * * * *
119886 TG-TTG---GTACACGATTTCGACAAAAATTTTACAAAAATTGA-CC---TGA-TTTTCCTCAAT
249 TGATGGAAAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGATCCGAAAGATTTTTCCTCAAT
* * * * * * ** *
119942 TTTTAGCCACAATACTCACAAAATATATATAATTCAACTGA-AAAAAGATTGGAGGACTTTTCAC
314 TTTTGGCCACAATTCTCATAAAA-AAATATAATTCAA-AGACAAAAAGATTGAAGGGGTTTTCAG
* * * ** * * * *
120006 GCTTTTAATATCGTTTTT-C-ATATTTTTCAAAATTAATTT-TAATTAAATCGAAACAAGATTCA
377 GCTTCTAATATAGTTTTTCCAATTTTTTTCTGAATTAATTTCGAATTAAATGGAAATATGATTCA
* * * * *
120068 GATGCTCGTAAAAACAAATCCTTAAATGCAATGTGGCTGAGATTTTGATTAGATAAATATAGATA
442 GATGCTCGTAAAAACAAATCCTTAAATCCAAAGTGGCTGAGA-TTTGGTCAGATGAATATAGATA
* * * * *
120133 TTTCAAGGAGTC-TCGACGTC-AAAAATCATGCAAAACTGAGTCGGGGCCCCGAAACGCAT-TAT
506 GTTCAAGGAGTCTTCG-TG-CAAAAAATCATGCAAAACTAAGTCGGTGCCTCGAAACG--TGT-T
*** * * * * * *
120195 TAGGAAAAAAACTGTGATGG-TTGTACACGATTTTTA-CTAAAATTTTACAAAAAATGACCT-GA
566 TAGCTTAAAATC-GTGATGGATAGTGCACGA--TTTAGCTAAAATTTTGCAAAAATTGATCTGGA
* * ** * * * *
120257 AAAGTTTTT-CTTAATTTTTGGAAAAAAT-AC-TCAT-GA-ATTATATATAATTTAATGCCAAAA
628 GAA-TTTTTCCTCAATTTTTGGCCACAATCTCATCATAGACA--ATATATAATTAAAAG--AAAA
* * ** *** * ** * *
120317 AGA-TTGGAGGACTTTTCACACTTTTCATATCGTTTTTTC-ATATTTTTCTTG-ATTAA-TGTCT
688 AAACTTGAAGGGTTTTTCACACTTCGAATATCATTTTCCCAAT-TTTTTC-TGAAATAATTTTC-
* * * ** * * * * * *
120378 AATTAAATCGAAACAAGATTCGGATGTTCGCAAAAGA-AAATCCTTAAATGCAATGTGCCTGAGA
750 AATTAAATAGAAACATGATACAAATGCTCGTAAAA-ACAAAACCTTAAATCCAAAGTGGCTGAGA
* * * * * * *
120442 TTTGATTAGATGAATATGAATATCTCAAGGAGTCTTGGCGCAAAAAATCATGCAAAACTGACTCG
814 TTTGGTCAGATGAATATAAATATTTCAAGGAGTCTTTGTGCAAAAAATCATGCAAAACTAACTCG
* * * ** * ** * * * ** *
120507 G-GGCTCTGGAACGCATTTTTAGCCAAAAATAGTGAT-GATTATTACACGATTTCAACTGAAATT
879 GTGTC-CCGAAACGTGTTTTTAGCCTAAAACCGTGATGGA-AAGTATACGATTTCTGCTAAAATT
* * * * * *
120570 TTGCAAAAATTGA-CCGAAAAGATATTACCTCAATTTTTGGCTA-AAATACTCA
942 TTGCAAAAATTGATCCGGAAA-ATTTTTCCTCAATTTTGGGCCACAACT-CTCA
* * * * * * * * *
120622 TAAAAAATATATAATTCAACGCCAAAAATATTGAAGGGTTTTTTACGCTTCTAGTAT--TTTTTT
1 TAAAATATATATAACTCAAAGCCAAAAAGATCGAAAGGTTTTTCACGCTTCTAATATCGTTTTTC
** * * * * ** *
120685 TTACTTTTTCTGAATTAATTTGTAATTAA-ATCGAAACAAGATTTATATGCTCGTAAAAACAAAT
66 CAATTTTTTCTGAATTAATTT-CAAATAATATCGAAACATGA-TTCGATGGTCGTAAAAACAAAT
* *
120749 CCTTAAATCCAATGTCGCTGAGTTTTTATTAGATGAATATAGATATTTCAAGGAGACTTGGTTAG
129 CCTTAAATCCAA--------AG-------T-G--G---CT-GAGATTT----G-G---T-G--AG
* * * * * * *
120814 ATAAATATAAATATTTCAAGAAGTCTTCTTGCCAAAAATCATTCAAAAATGAGTCGGGGTCCCAA
161 ATAAAGACAAATAGTTCAAGAAGTCTTCTTGCCAAAAATCATGCAAAACTGAGTCGGGGCCCCGA
* * * * * *
120879 AACACTTTTTTAGCTTAAAACTGTGATGGAAAGTATATGAATTCGGCTAAAATTTTGC-TAAATT
226 AACGCGTTTTTAGCTTAAAACTGTGATGGAAAGTACACGATTTCGGCTAAAATTTTGCAAAAATT
120943 GATCCGAAAGATTTTTCCTCAATTTTTGGCCACAATTCTCATAAAAAAATATAATTCAAAGACAA
291 GATCCGAAAGATTTTTCCTCAATTTTTGGCCACAATTCTCATAAAAAAATATAATTCAAAGACAA
* * *
121008 AAAGATTGAA-CGGTTTTCAAAGACTTCTAATATCGTTTTTCCAATTTTTTTTTCTGAATTAATT
356 AAAGATTGAAGGGGTTTTC--AGGCTTCTAATATAGTTTTTCCAA--TTTTTTTCTGAATTAATT
* * *
121072 TCAAAATAAATGGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAAAGTGGCTGA
417 TCGAATTAAATGGAAATATGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAAAGTGGCTGA
* * *
121137 GATTTGGTTAGATGAATATAGATAGTTCAAGGAGTCTTCGTGCTAAAAATCATGCAAAACTTAGT
482 GATTTGGTCAGATGAATATAGATAGTTCAAGGAGTCTTCGTGCAAAAAATCATGCAAAACTAAGT
* * *
121202 CGGGGCCTCGAAACGCGATTTTAGCTTAAAATCGTGATGGATAGTGCACGATTTCGGCTAAAATT
547 CGGTGCCTCGAAACGTG--TTTAGCTTAAAATCGTGATGGATAGTGCACGATTT-AGCTAAAATT
* * * *
121267 TTGCAAAAATTGAT-T-CAGAAAATTTTCCTCGATTTTTGGTCACAAT-TC-TCATAGACAATAT
609 TTGCAAAAATTGATCTGGAG-AATTTTTCCTCAATTTTTGGCCACAATCTCATCATAGACAATAT
* ** * * *
121328 ATAATTCAAAGAAAAAAACTTGAAGGGTTTTTCAGGCTTCTAATATCATTTTTCCATTTTTTTCT
673 ATAATTAAAAGAAAAAAACTTGAAGGGTTTTTCACACTTCGAATATCATTTTCCCAATTTTTTCT
*
121393 GAAATAATTTTGAATTAAATAGAAACATGATACAAATGCTCGTAAAAACAAAACCTTAAATCCAA
738 GAAATAATTTTCAATTAAATAGAAACATGATACAAATGCTCGTAAAAACAAAACCTTAAATCCAA
121458 AGTGGCTGAGATTTGGTCAGATGAATATAAATATTTCAAGGAGTCTTTGTGCAAAAAATCATGCA
803 AGTGGCTGAGATTTGGTCAGATGAATATAAATATTTCAAGGAGTCTTTGTGCAAAAAATCATGCA
*
121523 AAACTAACTCGGTGTCCCGAAATGTGTTTTTAGCCTAAAACCGTGATGGAAAGTATACGATTTCT
868 AAACTAACTCGGTGTCCCGAAACGTGTTTTTAGCCTAAAACCGTGATGGAAAGTATACGATTTCT
* *
121588 GCTAAAATTTTGCAAAATTTGATCCGGAAAATTTTTCCTCAATTTTGGGCCTCAACTCTCA
933 GCTAAAATTTTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTGGGCCACAACTCTCA
* * *
121649 TAATATATATATAACTCAAATCCAAAAAGATCGAAAGGTTTTTCACGCTTTTAATATCGTTTTTC
1 TAAAATATATATAACTCAAAGCCAAAAAGATCGAAAGGTTTTTCACGCTTCTAATATCGTTTTTC
121714 CAATTTTTTCTGAATTAATTTCAAATAATATCGAAACATGATTCGATGGTCGTAAAAACAAATCC
66 CAATTTTTTCTGAATTAATTTCAAATAATATCGAAACATGATTCGATGGTCGTAAAAACAAATCC
* * * *
121779 TTAAATCCAAAGTGGCTGAGATTTGGTGAGATGAAGA-AAGATAGTTCAAGGAGTCTTCGTGCTA
131 TTAAATCCAAAGTGGCTGAGATTTGGTGAGATAAAGACAA-ATAGTTCAAGAAGTCTTCTTGCCA
*
121843 AAAATCATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCTTAAAA-TCGTGATGGATAG
195 AAAATCATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCTTAAAACT-GTGATGGAAAG
* *
121907 TGCACGATTTCGGCTAAAATTTTGCAAAAATTGATCCGGAAA-CTTTTTCCTCAATTTTTGGCCA
259 TACACGATTTCGGCTAAAATTTTGCAAAAATTGATCC-GAAAGATTTTTCCTCAATTTTTGGCCA
*
121971 CAATTCTCATAAAAAAATATAATTCAAAGACAAATAGATTGAAGGGGTTTTCAGGCTTCTAATAT
323 CAATTCTCATAAAAAAATATAATTCAAAGACAAAAAGATTGAAGGGGTTTTCAGGCTTCTAATAT
* *
122036 ATTTTTTCCAA-TTTTTTCTGACTTAATTTCGAATTAAATGGAAATATGATTCAGATGCTCGTAA
388 AGTTTTTCCAATTTTTTTCTGAATTAATTTCGAATTAAATGGAAATATGATTCAGATGCTCGTAA
*
122100 AAACAAATCCTTAAATCCAAAGTGGCTGAGATTTGGTCATATGAATATAGATAGTTCAAGGAGTC
453 AAACAAATCCTTAAATCCAAAGTGGCTGAGATTTGGTCAGATGAATATAGATAGTTCAAGGAGTC
* * ** * * *
122165 TTTGTGCAAAAAATCGTGCAGTACTAAGTTGGTG-TTCCGAAACGTGTTTAGCTTAAAGTCGTGA
518 TTCGTGCAAAAAATCATGCAAAACTAAGTCGGTGCCT-CGAAACGTGTTTAGCTTAAAATCGTGA
* **
122229 TGGAAAGTATACGATTTATGCTAAAATTTTGCAAAAATTGATCTGGAGAATTTTTCCTCAATTTT
582 TGGATAGTGCACGATTTA-GCTAAAATTTTGCAAAAATTGATCTGGAGAATTTTTCCTCAATTTT
* * * *
122294 TGGCCACAACTCTCATAATATATATATATATATAATTAAAAGCCAAAAAGA-TTGAAGGGTTTTT
646 TGGCCACAA-TCTCAT--CATAGACA-ATATATAATTAAAAG--AAAAAAACTTGAAGGGTTTTT
* * *
122358 CACACTTCGAATATCGTTTTCCCAATTTTTTCTGAATTAA-TTTCAATTAATATCGAAACATGAT
705 CACACTTCGAATATCATTTTCCCAATTTTTTCTGAAATAATTTTCAATTAA-ATAGAAACATGAT
* ** * *
122422 TC-GGTGGTCGTAAAAACAAATA-CTTAAATCCAAAGTGGCTGAGATTTGGTTAGATGAATATAA
769 ACAAATGCTCGTAAAAACAAA-ACCTTAAATCCAAAGTGGCTGAGATTTGGTCAGATGAATATAA
*
122485 ATATTTCAAGGAGTCTTTGTGACAAAAAATCATGCAAAACTAAGTCGGTGTCCCGAAACGTGTTT
833 ATATTTCAAGGAGTCTTTGTG-CAAAAAATCATGCAAAACTAACTCGGTGTCCCGAAACGTGTTT
* * * *
122550 TTAGCTTAAAGCTGTGATGGAAAGTATACGATTTCTGTTAAAATTTTGCAAAAATTGATCCGG-A
897 TTAGCCTAAAACCGTGATGGAAAGTATACGATTTCTGCTAAAATTTTGCAAAAATTGATCCGGAA
* *
122614 AA-TTTTCCTCAATTTTTGGCCACCACTCTCA
962 AATTTTTCCTCAATTTTGGGCCACAACTCTCA
* * * *
122645 TAAAATATATATAATTTAAAGCCAAAAAGATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTC
1 TAAAATATATATAACTCAAAGCCAAAAAGATCGAAAGGTTTTTCACGCTTCTAATATCGTTTTTC
* * *
122710 CAATTTTTTTCTGAATTAATTTTAAATAATATCGAATCATGATTTGATGGTCGTAAAAACAAATC
66 CAA-TTTTTTCTGAATTAATTTCAAATAATATCGAAACATGATTCGATGGTCGTAAAAACAAATC
* * * *
122775 CTTAAATCCAATGTGGCTGAGATTTGGTTAGATAAATACAAATATTTCAAGAAGTCTTCTTGCCA
130 CTTAAATCCAAAGTGGCTGAGATTTGGTGAGATAAAGACAAATAGTTCAAGAAGTCTTCTTGCCA
* * *
122840 AAAAACATGCAAAACTGAGTCGGGGCACCGAAACGCGTTTTTAGCTTAAAACTGTGATAGAAAGT
195 AAAATCATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCTTAAAACTGTGATGGAAAGT
** * * * * *
122905 ACACGATTTCACCTACAATTTTG-AAAAATTGATTCGAAAGTTTTTTCCTCAGTTTTTTGCCACA
260 ACACGATTTCGGCTAAAATTTTGCAAAAATTGATCCGAAAGATTTTTCCTCAATTTTTGGCCACA
* *
122969 ATTATCATAAAAAAATATAATTCAAAGACAAAAAGGTTGAAGGGGTTTTCAGGCTTCTAATA-AC
325 ATTCTCATAAAAAAATATAATTCAAAGACAAAAAGATTGAAGGGGTTTTCAGGCTTCTAATATA-
* *
123033 GTTTTCCCAATTTTTTTCTGAATTAATTTCGAATTAAATGGAAATATGATTCAGATGCTTGTAAA
389 GTTTTTCCAATTTTTTTCTGAATTAATTTCGAATTAAATGGAAATATGATTCAGATGCTCGTAAA
* * *
123098 AACAAATCCTTAAATCCAAAGTGGCTGAGATTTGGTCAGATGAATATAAACAATTCAAGGAGTCT
454 AACAAATCCTTAAATCCAAAGTGGCTGAGATTTGGTCAGATGAATATAGATAGTTCAAGGAGTCT
* * * * *
123163 TCGTGCCAAAAATCATGCAAAACTGAGTCGGTGCCTCGAAACGCGTTTTTAGATTAAAATCGAGA
519 TCGTGCAAAAAATCATGCAAAACTAAGTCGGTGCCTCGAAA--CGTGTTTAGCTTAAAATCGTGA
* * * * *
123228 TGGATAGTGCACAATTTCAGCTAAAATTTTGCAAAAATTCATCTGGAAAATTTCTCCTTAATTTT
582 TGGATAGTGCACGATTT-AGCTAAAATTTTGCAAAAATTGATCTGGAGAATTTTTCCTCAATTTT
* * * ***
123293 TGGCCACAAT-TC-TCA-ATGACAATAAATAATTCAAAGAAAAAAATCTTGAAGGGTTATTCGGG
646 TGGCCACAATCTCATCATA-GACAATATATAATTAAAAGAAAAAAA-CTTGAAGGGTTTTTCACA
** * * * * *
123355 CTTTTAATATCGTTTTTCCATTTTTTTCTGAATTAATTTTGAATTAAAT-GAAAACATGATACAA
709 CTTCGAATATCATTTTCCCAATTTTTTCTGAAATAATTTTCAATTAAATAG-AAACATGATACAA
*
123419 ATGCTCGTAAAAACAAAATCTTAA
773 ATGCTCGTAAAAACAAAACCTTAA
123443 TTTTGAATTA
Statistics
Matches: 3161, Mismatches: 475, Indels: 347
0.79 0.12 0.09
Matches are distributed among these distances:
986 59 0.02
987 31 0.01
988 96 0.03
989 183 0.06
990 245 0.08
991 171 0.05
992 208 0.07
993 170 0.05
994 70 0.02
995 138 0.04
996 267 0.08
997 461 0.15
998 165 0.05
999 88 0.03
1000 1 0.00
1001 1 0.00
1002 2 0.00
1003 1 0.00
1005 1 0.00
1006 6 0.00
1007 1 0.00
1008 1 0.00
1009 5 0.00
1010 1 0.00
1012 1 0.00
1013 2 0.00
1014 1 0.00
1016 8 0.00
1017 4 0.00
1018 7 0.00
1019 7 0.00
1020 79 0.02
1021 1 0.00
1022 7 0.00
1023 25 0.01
1024 48 0.02
1025 1 0.00
1026 13 0.00
1027 281 0.09
1028 204 0.06
1029 99 0.03
1030 1 0.00
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (993 bp):
TAAAATATATATAACTCAAAGCCAAAAAGATCGAAAGGTTTTTCACGCTTCTAATATCGTTTTTC
CAATTTTTTCTGAATTAATTTCAAATAATATCGAAACATGATTCGATGGTCGTAAAAACAAATCC
TTAAATCCAAAGTGGCTGAGATTTGGTGAGATAAAGACAAATAGTTCAAGAAGTCTTCTTGCCAA
AAATCATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCTTAAAACTGTGATGGAAAGTA
CACGATTTCGGCTAAAATTTTGCAAAAATTGATCCGAAAGATTTTTCCTCAATTTTTGGCCACAA
TTCTCATAAAAAAATATAATTCAAAGACAAAAAGATTGAAGGGGTTTTCAGGCTTCTAATATAGT
TTTTCCAATTTTTTTCTGAATTAATTTCGAATTAAATGGAAATATGATTCAGATGCTCGTAAAAA
CAAATCCTTAAATCCAAAGTGGCTGAGATTTGGTCAGATGAATATAGATAGTTCAAGGAGTCTTC
GTGCAAAAAATCATGCAAAACTAAGTCGGTGCCTCGAAACGTGTTTAGCTTAAAATCGTGATGGA
TAGTGCACGATTTAGCTAAAATTTTGCAAAAATTGATCTGGAGAATTTTTCCTCAATTTTTGGCC
ACAATCTCATCATAGACAATATATAATTAAAAGAAAAAAACTTGAAGGGTTTTTCACACTTCGAA
TATCATTTTCCCAATTTTTTCTGAAATAATTTTCAATTAAATAGAAACATGATACAAATGCTCGT
AAAAACAAAACCTTAAATCCAAAGTGGCTGAGATTTGGTCAGATGAATATAAATATTTCAAGGAG
TCTTTGTGCAAAAAATCATGCAAAACTAACTCGGTGTCCCGAAACGTGTTTTTAGCCTAAAACCG
TGATGGAAAGTATACGATTTCTGCTAAAATTTTGCAAAAATTGATCCGGAAAATTTTTCCTCAAT
TTTGGGCCACAACTCTCA
Found at i:123488 original size:52 final size:52
Alignment explanation
Indices: 123387--123494 Score: 155
Period size: 52 Copynumber: 2.1 Consensus size: 52
123377 TTTTTCTGAA
*
123387 TTAATTTTGAATTAAATGAAAACATGATACAAATGCTCGTAAAAACAAAATC
1 TTAATTTTGAATTAAATGAAAACATGATACAAATGCTCGTAAAAACAAAACC
** **
123439 TTAATTTTGAATTAAAT-AGATGCATGATACAAATGCTCGTAAACGCAAAACC
1 TTAATTTTGAATTAAATGA-AAACATGATACAAATGCTCGTAAAAACAAAACC
123491 TTAA
1 TTAA
123495 ATACAAAGTG
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
51 1 0.02
52 49 0.98
ACGTcount: A:0.46, C:0.13, G:0.11, T:0.30
Consensus pattern (52 bp):
TTAATTTTGAATTAAATGAAAACATGATACAAATGCTCGTAAAAACAAAACC
Found at i:124875 original size:332 final size:331
Alignment explanation
Indices: 123708--126644 Score: 3278
Period size: 331 Copynumber: 9.0 Consensus size: 331
123698 AGCCAAAAAA
* * * *
123708 ATTTGGTCAAATGAATATAGATATTTCAAGGAGTCTCCGTGCCAAAAATCATGCAAAACTGAG-C
1 ATTTGGTCAGATGAATATAGATAGTTCAAGGAGTCTTCGTGCTAAAAATCATGCAAAACTGAGTC
* * * * * * *
123772 TGAGGC-CTCGAAACGCGTTTTTAGCTGAAAACCTTGATGAAAAGTACACGATTTC-GACTAAAA
66 -GGGGCTC-CGAAACGCGTTTTTAGCTTAAAATCGTGATGGATAGTGCACGATTTCTG-CTAAAA
* * * *
123835 TTTTGCAAAAATTGATTCGGAAAATTTTTCCTCACTTTTTGGCCAAAATTCTTATAAAAATATAT
128 TTTTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCATAAAAATATAT
* * **
123900 AATTCAAAGACAAAAAGATTGAAGGGCTTTTAAGGCTTCTAATAAAGTTTTTCCAATTTTTTCTG
193 AATTCAAAGACAAAAAGATTGAAGGGTTTTTCAGGCTTCTAATATCGTTTTTCCAATTTTTTCTG
* * * * *
123965 AATTAATTTCTAATTAAATAGAAACATGATTCAGATGCTTGT-AAAACAAATCCTTAAAACAAAA
258 AATTAATTTCAAATAAAATAGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAAA
*
124029 GTGGCCT-AA
323 GTGG-CTGAG
* * * * * *
124038 ATTTGGTCAGATGAATATAGATATTTTGAAGGAGTTTTCGTGCCAAAAATCATGCAACACTCAGT
1 ATTTGGTCAGATGAATATAGATA-GTTCAAGGAGTCTTCGTGCTAAAAATCATGCAAAACTGAGT
* * * *
124103 CGGGGCAT-CGAAACGTGTTTTTAGTTTAAAACCGTGATGGATAGTGCACGATTTCGGCTAAAAT
65 CGGGGC-TCCGAAACGCGTTTTTAGCTTAAAATCGTGATGGATAGTGCACGATTTCTGCTAAAAT
** *
124167 TTTGCAAAAATTGATCCTAAAAATTTTTCGC-CAATTTTTTGCCACAATTCTC-TCAGAAAATAT
129 TTTGCAAAAATTGATCCGGAAAATTTTTC-CTCAATTTTTGGCCACAATTCTCAT-A-AAAATAT
* * * *
124230 ATAATTCAAAGACAAAAAGCTTGAAAGG-TTTTCAGGCTTTTAATATCGTTTTTTCAATTTTTTT
191 ATAATTCAAAGACAAAAAGATTGAAGGGTTTTTCAGGCTTCTAATATCGTTTTTCCAA-TTTTTT
* ** * * * * * * *
124294 CTTAATTAATTTTGAATTAAGTAGAGACATGCTACAAATGCTTGTAAAAACAAATCCTTAAATCC
255 CTGAATTAATTTCAAATAAAATAGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAATCC
124359 AAAGTGGCTGAG
320 AAAGTGGCTGAG
* * * * * * **
124371 ATTTTGTCAGATGAATATAAATATTTCAAGGAGTCTT-TTGC-AAAATATCGTGCACAACAAAGT
1 ATTTGGTCAGATGAATATAGATAGTTCAAGGAGTCTTCGTGCTAAAA-ATCATGCAAAACTGAGT
* * * ** * * **
124434 TGGTG-TCCTGAAACGTGTTTTTAGCTTAAAGCCGTGATGGAAACTATACGATTTCTGCTAAAAT
65 CGGGGCTCC-GAAACGCGTTTTTAGCTTAAAATCGTGATGGATAGTGCACGATTTCTGCTAAAAT
* * *
124498 TTTGCAAAAATTGATACGGAGAATTTTTCCTCAATTTTTGGCCACAACTCTCATAAAATATATAT
129 TTTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCATAAAA-ATATAT
* * * **
124563 AATTCAAAGCCAAAAAGATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCAATTTTTCCAA
193 AATTCAAAGACAAAAAGATTGAAGGGTTTTTCAGGCTTCTAATATCGTTTTTCCAATTTTTTCTG
* *
124628 AATTAATTTCAAATAAAATCGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTGAATCCAAA
258 AATTAATTTCAAATAAAATAGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAAA
124693 GTGGCTGAG
323 GTGGCTGAG
* *
124702 ATTTGGTCAGATGAAGATAGATAGTTCAAGGAGTCTTCGTGCCAAAAATCATGCAAAACTGAGTC
1 ATTTGGTCAGATGAATATAGATAGTTCAAGGAGTCTTCGTGCTAAAAATCATGCAAAACTGAGTC
*
124767 GGGGCTCCGAAACGCGTTTTTAGCGTAAAATCGTGATGGATAGTGCACGATTTCTGCTAAAATTT
66 GGGGCTCCGAAACGCGTTTTTAGCTTAAAATCGTGATGGATAGTGCACGATTTCTGCTAAAATTT
* * * *
124832 TGCAAAAATTGATCCGGAAAATTTTTTCTCAATTTTGGGCCACAATTCTCATTGACAATATATAA
131 TGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCA-TAAAAATATATAA
* * * *
124897 TTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCTAATATCGTTTCTCCATTTTTTTTCTGA
195 TTCAAAGACAAAAAGATTGAAGGGTTTTTCAGGCTTCTAATATCGTTTTTCCA-ATTTTTTCTGA
* * *
124962 ATTAATTTCGAATTAAAA-AGAAACACGATTCAGATGCTCGTAAAAACAAATCCTTAAAACCAAA
259 ATTAATTTC-AAATAAAATAGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAAA
*
125026 TTGGCTGAG
323 GTGGCTGAG
* *
125035 ATTTGGTCAGATGAATATAGATAGTTCAAGGAGTCTTCGTGCTAAAACTCATGCAAAACTGAGTT
1 ATTTGGTCAGATGAATATAGATAGTTCAAGGAGTCTTCGTGCTAAAAATCATGCAAAACTGAGTC
* *
125100 GGGGC-CTCGAAACGCGTTTTTAGCTTAAAATCGTGATAGATAGTGCACGATTTCGGCTAAAATT
66 GGGGCTC-CGAAACGCGTTTTTAGCTTAAAATCGTGATGGATAGTGCACGATTTCTGCTAAAATT
* *
125164 TTGCAAAAATTGATCCGGAAAATTTTTCTTCAATTTTTGGCCACAATTCTCATAGACAATATATA
130 TTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCATA-AAAATATATA
* * * *
125229 ATTAAAAGA-AACAAAGCTTGAAGGGTTTTTCAGGCTTTTAATATCGTTTTTCCATTTTTTTCTG
194 ATTCAAAGACAA-AAAGATTGAAGGGTTTTTCAGGCTTCTAATATCGTTTTTCCAATTTTTTCTG
** * * * *
125293 AATTAATTTTGAATTAAAT-GAAACATGATACAAATGCTCGTAAAAATAAA-CCTTAAATCCAAA
258 AATTAATTTCAAATAAAATAGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAAA
125356 GTGGCTGAG
323 GTGGCTGAG
* * * *
125365 ATTTGGTCAGATGAATATAAATATTTCAAGGAGTCTTTGTGC-AAAAAGTCATGC-AAACTAAGT
1 ATTTGGTCAGATGAATATAGATAGTTCAAGGAGTCTTCGTGCTAAAAA-TCATGCAAAACTGAGT
* * * * * * **
125428 CGGTGTTCCGAAACGTGTTTTTAGCCTAAAACCGTGATGGAAAGTATACGATTTCTGCTAAAATT
65 CGGGGCTCCGAAACGCGTTTTTAGCTTAAAATCGTGATGGATAGTGCACGATTTCTGCTAAAATT
* *
125493 TTGCAAAAATTGATTCGGAAAATTTTTCCTCAATTTTTGGCCACAACTCTCATAAAATATATATA
130 TTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCATAAAA-ATATATA
* ** * * * *
125558 ACTCAAATCCAAAAAGATCGAAGGGTTTTTCACGCTTCTAATATTGTTTTTCCAATTTTATCTGA
194 ATTCAAAGACAAAAAGATTGAAGGGTTTTTCAGGCTTCTAATATCGTTTTTCCAATTTTTTCTGA
* * * *
125623 ATTAATTTCAAATAATATCGAAACATGATTC-GATGGTCGTAAAAACAAATCCTTAAATCCAATG
259 ATTAATTTCAAATAAAATAGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAAAG
125687 TGGCTGAG
324 TGGCTGAG
* * * * * * * *
125695 ATTTGGTTAGATAAATATAAATATTTCAAGAAGTCTTCTTGCCAAAAATCATGCAAAACTGTGTC
1 ATTTGGTCAGATGAATATAGATAGTTCAAGGAGTCTTCGTGCTAAAAATCATGCAAAACTGAGTC
* * * * **
125760 GGGGCCCCGAAATGCTTTTTTAGCTTAAAA-CTGTGATGGAAAGTATACGATTT-TGGCTAAAAT
66 GGGGCTCCGAAACGCGTTTTTAGCTTAAAATC-GTGATGGATAGTGCACGATTTCT-GCTAAAAT
* * * *
125823 TTTGC-TAAATTGAACC-GAAAGATTTTTCCTC-A----T----A-AA-----ATATATATA-AT
129 TTTGCAAAAATTGATCCGGAAA-ATTTTTCCTCAATTTTTGGCCACAATTCTCATAAAAATATAT
* * * * *
125870 AA-T--AAGATAAAAAGCTTGAAAGG-TTTTCAGACTTTTAATATCGTTTTTCCAATTTATTT-T
193 AATTCAAAGACAAAAAGATTGAAGGGTTTTTCAGGCTTCTAATATCGTTTTTCCAATTT-TTTCT
* * ** * * * *
125930 TAATTAGTTTTGAATTAAATAGAAACATGATACAAATGCTCGTAAAAAGAAATCCTTAAATCCAA
257 GAATTAATTTCAAATAAAATAGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAA
125995 AGTGGCTGAG
322 AGTGGCTGAG
* * * *
126005 ATTTGGTCAGATGAATATAAATATTTCAAGGAGTCTTTGTGCAAAAAATCATGCAAAACT-ATGT
1 ATTTGGTCAGATGAATATAGATAGTTCAAGGAGTCTTCGTGCTAAAAATCATGCAAAACTGA-GT
* * * * * *
126069 CGGTG-TCCCGAAATGTGTTTTTAGCTT-AAAGC-CG-T-G--A-T--ACGATTTTTGCTAAAAT
65 CGGGGCT-CCGAAACGCGTTTTTAGCTTAAAATCGTGATGGATAGTGCACGATTTCTGCTAAAAT
* * * *
126124 TTTGCAAAAATTGATTCGGAAAATTTTTCCTCAATTTTCGGCCACAACTCTCATAAAATACATAT
129 TTTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCATAAAA-ATATAT
* * * * *
126189 AATTTAAAGGA-AAAAAGATCGAAGGGTTTTTCACGCTTTTAATATCGTTTCTCCAATTTTTTCT
193 AATTCAAA-GACAAAAAGATTGAAGGGTTTTTCAGGCTTCTAATATCGTTTTTCCAATTTTTTCT
* * * *
126253 GAATTAATTTCGAATTAAATGGAAACATGATTCAAATGCTCGTAAAAACAAATCCTTAAATCCAA
257 GAATTAATTTCAAATAAAATAGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAA
126318 AGTGGCTGAG
322 AGTGGCTGAG
*
126328 ATTTGGTCAGATGAATATAGATAGTTCAAGGAGTCTTCGTGCCAAAAATCATGCAAAACTGAGTC
1 ATTTGGTCAGATGAATATAGATAGTTCAAGGAGTCTTCGTGCTAAAAATCATGCAAAACTGAGTC
* * * **
126393 GGTGC-CTCGAAACACGTGTTTAGCTTAAAATCGTGATGGATAGTGCACGATTTGAGCTAAAATT
66 GGGGCTC-CGAAACGCGTTTTTAGCTTAAAATCGTGATGGATAGTGCACGATTTCTGCTAAAATT
* * *
126457 TTGCAAAAATTCATCCGGAAAATTTTTCCTTAATTTTTGGCCACAATTCTCATAGACAATATATA
130 TTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCATA-AAAATATATA
* *
126522 ATTCAAAGGA-AAAAA-ATCTGGAAGGGTTATTCAGGCTT-TCAATATCGTTTTTCCATTTTTTT
194 ATTCAAA-GACAAAAAGAT-T-GAAGGGTTTTTCAGGCTTCT-AATATCGTTTTTCCAATTTTTT
** * * * *
126584 CTGAATTAATTTTGAATTAAATAGAAACATGATACAAATGCTCGTAAAAACAAAACCTTAA
255 CTGAATTAATTTCAAATAAAATAGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAA
126645 TTTTGAATTA
Statistics
Matches: 2230, Mismatches: 291, Indels: 169
0.83 0.11 0.06
Matches are distributed among these distances:
301 20 0.01
302 19 0.01
303 6 0.00
304 1 0.00
306 1 0.00
307 1 0.00
308 1 0.00
309 57 0.03
310 132 0.06
311 1 0.00
312 3 0.00
313 4 0.00
314 3 0.00
315 4 0.00
317 4 0.00
318 2 0.00
319 4 0.00
320 3 0.00
321 1 0.00
322 18 0.01
323 179 0.08
324 5 0.00
325 2 0.00
326 1 0.00
327 1 0.00
328 2 0.00
329 209 0.09
330 196 0.09
331 500 0.22
332 399 0.18
333 444 0.20
334 7 0.00
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.33
Consensus pattern (331 bp):
ATTTGGTCAGATGAATATAGATAGTTCAAGGAGTCTTCGTGCTAAAAATCATGCAAAACTGAGTC
GGGGCTCCGAAACGCGTTTTTAGCTTAAAATCGTGATGGATAGTGCACGATTTCTGCTAAAATTT
TGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCATAAAAATATATAAT
TCAAAGACAAAAAGATTGAAGGGTTTTTCAGGCTTCTAATATCGTTTTTCCAATTTTTTCTGAAT
TAATTTCAAATAAAATAGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAAAGTG
GCTGAG
Found at i:125122 original size:333 final size:331
Alignment explanation
Indices: 123708--132493 Score: 7410
Period size: 333 Copynumber: 26.1 Consensus size: 331
123698 AGCCAAAAAA
* *
123708 ATTTGGTCAAATGAATATAGATATTTCAAGGAGTCTCCGTGCCAAAAATCATGCAAAACTGAG-C
1 ATTTGGTCAGATGAATATAGATATTTCAAGGAGTCTTCGTGCCAAAAATCATGCAAAACTGAGTC
* * * *
123772 TGAGGCCTCGAAACGCGTTTTTAGCTGAAAACCTTGATGAAAAGTACACGATTTC-GACTAAAAT
66 -GGGGCCTCGAAACGCGTTTTTAGCTTAAAACCGTGATGGAAAGTACACGATTTCTG-CTAAAAT
* * * * *
123836 TTTGCAAAAATTGATTCGGAAAATTTTTCCTCACTTTTTGGCCAAAATTCTTATAAAAATATATA
129 TTTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCATGAAAATATATA
* * * * ** *
123901 ATTCAAAGACAAAAAGATTGAAGGGCTTTTAAGGCTTCTAATAAAGTTTTTCCAATTTTTTCTGA
194 ATTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCTAATATCGTTTTTCCATTTTTTTCTGA
* * * * *
123966 ATTAATTTCTAATTAAATAGAAACATGATTCAGATGCTTGT-AAAACAAATCCTTAAAACAAAAG
259 ATTAATTTCGAATTAAATAGAAACATGATTCAAATGCTCGTAAAAACAAATCCTTAAATCCAAAG
*
124030 TGGCCT-AA
324 TGG-CTGAG
* * * *
124038 ATTTGGTCAGATGAATATAGATATTTTGAAGGAGTTTTCGTGCCAAAAATCATGCAACACTCAGT
1 ATTTGGTCAGATGAATATAGATA-TTTCAAGGAGTCTTCGTGCCAAAAATCATGCAAAACTGAGT
* * * * * *
124103 CGGGGCATCGAAACGTGTTTTTAGTTTAAAACCGTGATGGATAGTGCACGATTTCGGCTAAAATT
65 CGGGGCCTCGAAACGCGTTTTTAGCTTAAAACCGTGATGGAAAGTACACGATTTCTGCTAAAATT
** *
124168 TTGCAAAAATTGATCCTAAAAATTTTTCGC-CAATTTTTTGCCACAATTCTC-TCAGAAAATATA
130 TTGCAAAAATTGATCCGGAAAATTTTTC-CTCAATTTTTGGCCACAATTCTCAT--GAAAATATA
* * * *
124231 TAATTCAAAGACAAAAAGCTTGAAAGG-TTTTCAGGCTTTTAATATCGTTTTTTCAATTTTTTTC
192 TAATTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCTAATATCG-TTTTTCCATTTTTTTC
* * * * * * *
124295 TTAATTAATTTTGAATTAAGTAGAGACATGCTACAAATGCTTGTAAAAACAAATCCTTAAATCCA
256 TGAATTAATTTCGAATTAAATAGAAACATGATTCAAATGCTCGTAAAAACAAATCCTTAAATCCA
124360 AAGTGGCTGAG
321 AAGTGGCTGAG
* * * * * **
124371 ATTTTGTCAGATGAATATAAATATTTCAAGGAGTCTT-TTG-CAAAATATCGTGCACAACAAAGT
1 ATTTGGTCAGATGAATATAGATATTTCAAGGAGTCTTCGTGCCAAAA-ATCATGCAAAACTGAGT
* * * * * *
124434 TGGTGTCCT-GAAACGTGTTTTTAGCTTAAAGCCGTGATGGAAACTATACGATTTCTGCTAAAAT
65 CGG-GGCCTCGAAACGCGTTTTTAGCTTAAAACCGTGATGGAAAGTACACGATTTCTGCTAAAAT
* * * *
124498 TTTGCAAAAATTGATACGGAGAATTTTTCCTCAATTTTTGGCCACAACTCTCATAAAATATATAT
129 TTTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCATGAAA-ATATAT
** * * * * **
124563 AATTCAAAGCCAAAAAGATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCAATTTTTCCAA
193 AATTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCTAATATCGTTTTTCCATTTTTTTCTG
* * * * *
124628 AATTAATTTCAAATAAAATCGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTGAATCCAAA
258 AATTAATTTCGAATTAAATAGAAACATGATTCAAATGCTCGTAAAAACAAATCCTTAAATCCAAA
124693 GTGGCTGAG
323 GTGGCTGAG
* *
124702 ATTTGGTCAGATGAAGATAGATAGTTCAAGGAGTCTTCGTGCCAAAAATCATGCAAAACTGAGTC
1 ATTTGGTCAGATGAATATAGATATTTCAAGGAGTCTTCGTGCCAAAAATCATGCAAAACTGAGTC
* * * *
124767 GGGG-CTCCGAAACGCGTTTTTAGCGTAAAATCGTGATGGATAGTGCACGATTTCTGCTAAAATT
66 GGGGCCT-CGAAACGCGTTTTTAGCTTAAAACCGTGATGGAAAGTACACGATTTCTGCTAAAATT
* * *
124831 TTGCAAAAATTGATCCGGAAAATTTTTTCTCAATTTTGGGCCACAATTCTCATTGACAATATATA
130 TTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCA-TGAAAATATATA
*
124896 ATTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCTAATATCGTTTCTCCATTTTTTTTCTG
194 ATTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCTAATATCGTTTTTCCA-TTTTTTTCTG
* * * *
124961 AATTAATTTCGAATTAAAAAGAAACACGATTCAGATGCTCGTAAAAACAAATCCTTAAAACCAAA
258 AATTAATTTCGAATTAAATAGAAACATGATTCAAATGCTCGTAAAAACAAATCCTTAAATCCAAA
*
125026 TTGGCTGAG
323 GTGGCTGAG
* * * *
125035 ATTTGGTCAGATGAATATAGATAGTTCAAGGAGTCTTCGTGCTAAAACTCATGCAAAACTGAGTT
1 ATTTGGTCAGATGAATATAGATATTTCAAGGAGTCTTCGTGCCAAAAATCATGCAAAACTGAGTC
* * * * *
125100 GGGGCCTCGAAACGCGTTTTTAGCTTAAAATCGTGATAGATAGTGCACGATTTCGGCTAAAATTT
66 GGGGCCTCGAAACGCGTTTTTAGCTTAAAACCGTGATGGAAAGTACACGATTTCTGCTAAAATTT
* *
125165 TGCAAAAATTGATCCGGAAAATTTTTCTTCAATTTTTGGCCACAATTCTCATAGACAATATATAA
131 TGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCAT-GAAAATATATAA
* * *
125230 TTAAAAGAAACAAAGCTTGAAGGGTTTTTCAGGCTTTTAATATCGTTTTTCCATTTTTTTCTGAA
195 TTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCTAATATCGTTTTTCCATTTTTTTCTGAA
* * *
125295 TTAATTTTGAATTAAAT-GAAACATGATACAAATGCTCGTAAAAATAAA-CCTTAAATCCAAAGT
260 TTAATTTCGAATTAAATAGAAACATGATTCAAATGCTCGTAAAAACAAATCCTTAAATCCAAAGT
125358 GGCTGAG
325 GGCTGAG
* * *
125365 ATTTGGTCAGATGAATATAAATATTTCAAGGAGTCTTTGTG-CAAAAAGTCATGC-AAACTAAGT
1 ATTTGGTCAGATGAATATAGATATTTCAAGGAGTCTTCGTGCCAAAAA-TCATGCAAAACTGAGT
* * * * *
125428 CGGTG-TTCCGAAACGTGTTTTTAGCCTAAAACCGTGATGGAAAGTATACGATTTCTGCTAAAAT
65 CGGGGCCT-CGAAACGCGTTTTTAGCTTAAAACCGTGATGGAAAGTACACGATTTCTGCTAAAAT
* * *
125492 TTTGCAAAAATTGATTCGGAAAATTTTTCCTCAATTTTTGGCCACAACTCTCATAAAATATATAT
129 TTTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCATGAAA-ATATAT
* *** * * * * * *
125557 AACTCAAATCCAAAAAGATCGAAGGGTTTTTCACGCTTCTAATATTGTTTTTCCAATTTTATCTG
193 AATTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCTAATATCGTTTTTCCATTTTTTTCTG
* * * *
125622 AATTAATTTC-AAATAATATCGAAACATGATTC-GATGGTCGTAAAAACAAATCCTTAAATCCAA
258 AATTAATTTCGAATTAA-ATAGAAACATGATTCAAATGCTCGTAAAAACAAATCCTTAAATCCAA
*
125685 TGTGGCTGAG
322 AGTGGCTGAG
* * * * * *
125695 ATTTGGTTAGATAAATATAAATATTTCAAGAAGTCTTCTTGCCAAAAATCATGCAAAACTGTGTC
1 ATTTGGTCAGATGAATATAGATATTTCAAGGAGTCTTCGTGCCAAAAATCATGCAAAACTGAGTC
* * * * *
125760 GGGGCCCCGAAATGCTTTTTTAGCTTAAAACTGTGATGGAAAGTATACGATTT-TGGCTAAAATT
66 GGGGCCTCGAAACGCGTTTTTAGCTTAAAACCGTGATGGAAAGTACACGATTTCT-GCTAAAATT
* * * *
125824 TTGC-TAAATTGAACC-GAAAGATTTTTCCTC-A----T----A-AA--AT-AT--ATATA-ATA
130 TTGCAAAAATTGATCCGGAAA-ATTTTTCCTCAATTTTTGGCCACAATTCTCATGAAAATATATA
* * * *
125871 A-T--AAGATAAAAAGCTTGAAAGG-TTTTCAGACTTTTAATATCGTTTTTCCAATTTATTTT-T
194 ATTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCTAATATCGTTTTTCC-ATTT-TTTTCT
* * * *
125931 -AATTAGTTTTGAATTAAATAGAAACATGATACAAATGCTCGTAAAAAGAAATCCTTAAATCCAA
257 GAATTAATTTCGAATTAAATAGAAACATGATTCAAATGCTCGTAAAAACAAATCCTTAAATCCAA
125995 AGTGGCTGAG
322 AGTGGCTGAG
* * *
126005 ATTTGGTCAGATGAATATAAATATTTCAAGGAGTCTTTGTGCAAAAAATCATGCAAAACT-ATGT
1 ATTTGGTCAGATGAATATAGATATTTCAAGGAGTCTTCGTGCCAAAAATCATGCAAAACTGA-GT
* * * * *
126069 CGGTGTCC-CGAAATGTGTTTTTAGCTTAAAGCC--G-T-G--A-T--ACGATTTTTGCTAAAAT
65 CGG-GGCCTCGAAACGCGTTTTTAGCTTAAAACCGTGATGGAAAGTACACGATTTCTGCTAAAAT
* * *
126124 TTTGCAAAAATTGATTCGGAAAATTTTTCCTCAATTTTCGGCCACAACTCTCAT-AAAATACATA
129 TTTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCATGAAAAT--ATA
* * * * * * * *
126188 TAATTTAAAGGAAAAAAGATCGAAGGGTTTTTCACGCTTTTAATATCGTTTCTCCAATTTTTTCT
192 TAATTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCTAATATCGTTTTTCCATTTTTTTCT
*
126253 GAATTAATTTCGAATTAAATGGAAACATGATTCAAATGCTCGTAAAAACAAATCCTTAAATCCAA
257 GAATTAATTTCGAATTAAATAGAAACATGATTCAAATGCTCGTAAAAACAAATCCTTAAATCCAA
126318 AGTGGCTGAG
322 AGTGGCTGAG
*
126328 ATTTGGTCAGATGAATATAGATAGTTCAAGGAGTCTTCGTGCCAAAAATCATGCAAAACTGAGTC
1 ATTTGGTCAGATGAATATAGATATTTCAAGGAGTCTTCGTGCCAAAAATCATGCAAAACTGAGTC
* * * * * * **
126393 GGTGCCTCGAAACACGTGTTTAGCTTAAAATCGTGATGGATAGTGCACGATTTGAGCTAAAATTT
66 GGGGCCTCGAAACGCGTTTTTAGCTTAAAACCGTGATGGAAAGTACACGATTTCTGCTAAAATTT
* * *
126458 TGCAAAAATTCATCCGGAAAATTTTTCCTTAATTTTTGGCCACAATTCTCATAGACAATATATAA
131 TGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCAT-GAAAATATATAA
* * *
126523 TTCAAAGGAAAAAAATCTGGAAGGGTTATTCAGGCTT-TCAATATCGTTTTTCCATTTTTTTCTG
195 TTCAAA-GAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCT-AATATCGTTTTTCCATTTTTTTCTG
* * *
126587 AATTAATTTTGAATTAAATAGAAACATGATACAAATGCTCGTAAAAACAAAACCTTAATTTTGAA
258 AATTAATTTCGAATTAAATAGAAACATGATTCAAATGCTCGTAAAAACAAATCCTT-A-----AA
** ** *
126652 TTAAATAGAAGCATGATAC
317 TCCAA-AGTGGC-TG--AG
** * * * * * * **
126671 AAATGCTC-G-TAAACACA-AAACTTTAAATCCAAAGTGGTTGAGAT-TTGGTTAGATGAATATA
1 ATTTGGTCAGATGAATATAGATA--TT---T-C-AA---G--GAG-TCTTCG-T-G--CCA-A-A
* * * * * * * * *** **
126732 AATAATTCAAGGA-TTATTC-GTG---CAAAACTGAGTCGGT-GTCCCAAAACGCGTTTTTAGCT
47 AATCATGCAA-AACTGAGTCGGGGCCTCGAAAC-GCGTTTTTAG-CTTAAAAC-CG----T-G--
* * * * * * *
126791 TAAAGTCTTGATAAAAAGTATACGATTTCGGCTAATATTTTACAAAAATTGATCAGG--GA----
101 ---A----TG---GAAAGTACACGATTTCTGCTAAAATTTTGCAAAAATTGATCCGGAAAATTTT
* * * *
126850 -----AATTTTTGG-CACAACTCTCATACAAAAATATATAATTCATAGCCAAAAAA--TT-----
156 TCCTCAATTTTTGGCCACAATTCTCAT--GAAAATATATAATTCAAAG-AAAAAAAGCTTGAAGG
** ** * * * * *** * * * * *
126902 -TTGGTCA--AAT-GAATATAGATATTTCAAGGAGTCTTCGTGCCAA-AAATCAT-GCA--AAAC
218 GTTTTTCAGGCTTCTAATATCG-TTTTTCCA-TTTTTTTC-TG--AATTAAT-TTCGAATTAAAT
** * ** * * **** *** * **
126959 AGAGCCGGTGCCTCGAAAAATTGATTCG-GAAAATTTTTCCTCACTTTTTGGCCAAAATTCTCAT
277 AGAAAC-ATGATTC---AAA-TG-CTCGTAAAAACAAATCCT---TAAAT--CC-AAAGTGGC-T
* *
127023 AAAA
329 -GAG
** * * * * * *
127027 ATATATAATTCA-AAGACAAAAAGATTGAAGGGCTTTTAAGGATTCTAATATCGTTTTTCC--AA
1 AT-T-T-GGTCAGATGA-ATATAGA-T--A----TTTCAAGGAGTC---T-TCG---TGCCAAAA
* ** * ** * * * ***** * ** ** ** ** *
127089 TTTTTTCTGAATTAATTTCGAATTAAATAGAAACATGATTCATATGCGTGTAAAAACAAATCCTT
48 ATCATGCAAAACTGA-GTCG--GGGCCTCGAAACGCG-TTTTTA-GC-T-T-AAAAC-CGTGATG
* ** * * * * * **
127154 AAAACAAAACTGA-GTCGGGGCATCGAAACGCGTTTTTAGTTTAAAACCGTGAT--GGATAGTAC
104 GAAAGTACAC-GATTTC--TGC-T--AAA----ATTTT-G--CAAAA-ATTGATCCGGA-A--A-
** * * * * * * * *
127216 ACGATTTCGGCTAAAATTTT-GCAAAAATTGATC-CGAAAAATTTTTCCCCAATTTTTGGCCACA
151 A-TTTTTC--CTCAATTTTTGGCCACAATT-CTCATG-AAAATATAT----AA---TT-----CA
* * * *
127279 ATTCTCTCAGAAAATATATA-ATTCAAAGACAAAAAGCTTGAAAGGTTTTTAAGGCTTTTAATAT
199 A-------AGAAAA-A-A-AGCTT----G-----AAG---G---GTTTTTC-AGGCTTCTAATAT
* * * * ** * * * **
127343 CGTTTTTCCAATTTTTTCTTAATTAATTTTGAATTAAGTTTAAACATGCTACAAATGATTATAAA
238 CGTTTTTCCATTTTTTTCTGAATTAATTTCGAATTAAATAGAAACATGATTCAAATGCTCGTAAA
127408 AACAAATCCTTAAATCCAAAGTGGCTGAG
303 AACAAATCCTTAAATCCAAAGTGGCTGAG
* * * * * * ** *
127437 ATTTTGTCCGATGAATATAAATATTTCAAGGAGTCTTTGTG-CAAAATATCGTGCAGAACAAATT
1 ATTTGGTCAGATGAATATAGATATTTCAAGGAGTCTTCGTGCCAAAA-ATCATGCAAAACTGAGT
* * * * * * *
127501 TGGTGTCCT-GAAACGTGTTTTTGGCTTAAAGCCGTGATGGAAAATATACGATTTCTGCTAAAAT
65 CGG-GGCCTCGAAACGCGTTTTTAGCTTAAAACCGTGATGGAAAGTACACGATTTCTGCTAAAAT
* * * * *
127565 TTTGCAAAAATTGATACGGAGAATTTGTCCTCAATTTTTGGCCACAAGTCTCATAAAATATATAT
129 TTTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCATGAAA-ATATAT
** * * *
127630 AATTCAAAGCCAAAAAGATTGAAGGG-TTTTCACGCTTCTAATATCGTTATTCCAATTTTTTTCT
193 AATTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCTAATATCGTTTTTCC-ATTTTTTTCT
* * *
127694 G----AA-TT--AA-T--ATCGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAG
257 GAATTAATTTCGAATTAAATAGAAACATGATTCAAATGCTCGTAAAAACAAATCCTTAAATCCAA
127749 AGTGGCTGAG
322 AGTGGCTGAG
* * * *
127759 ATTTGGTCAGATGAAGATAGATAGTTCAAGGAGTCTTCGTGCTAAAAATCATGCAAAACTGAGCC
1 ATTTGGTCAGATGAATATAGATATTTCAAGGAGTCTTCGTGCCAAAAATCATGCAAAACTGAGTC
* * ** * *
127824 GGGGCCTCGAAACACGTTTTTAGCTTTAAATTGTGAT-AAATAGTGCACGATTTCTGCTAAAATT
66 GGGGCCTCGAAACGCGTTTTTAGCTTAAAACCGTGATGGAA-AGTACACGATTTCTGCTAAAATT
* * * * *
127888 TTGCAAAAATTGATTCGGAAATTTTTTCCTCAATTTTTGGCCAAAACTCTCATAAAATATATATA
130 TTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCATGAAA-ATATATA
* *** * * * * * *
127953 ACTCAAATCCAAAAAGATCGAAGGGTTTTTCACGCTTTTAATATCATTTTTCCAATTTTTTT-GG
194 ATTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCTAATATCGTTTTTCC-ATTTTTTTCTG
* * * *
128017 AATTAATTTC-AAATAATATCGAAACATGATTC-GATGGTCGTAAAAACAAATCCTTAAATCCAA
258 AATTAATTTCGAATTAA-ATAGAAACATGATTCAAATGCTCGTAAAAACAAATCCTTAAATCCAA
*
128080 AGTGGCTGGG
322 AGTGGCTGAG
* * * * * *
128090 ATTTGGTCAGATGAAGATAGGTAGTTCAATGAGTCTTCGTGCTAAAAATCATGCAAAACTAAGTC
1 ATTTGGTCAGATGAATATAGATATTTCAAGGAGTCTTCGTGCCAAAAATCATGCAAAACTGAGTC
* * * *
128155 GGGGCCCCGAAACGCGTTTTTAGCTTAAAATCGTGATGCGTAACCCG-ACTCTTTGAATTGAGTA
66 GGGGCCTCGAAACGCGTTTTTAGCTTAAAACCGTGATG-G-AA--AGTACAC---G-ATT---T-
* *** * * ** *** * **
128219 CCTACGACTGTGGAATGCCTATTTTATTAAAATAGAT-AGTGCACGATTTCGGCTAAAAATTT-G
119 -CT--G-C--T--AA----AATTTTGCAAAAATTGATCCG-G-AAAATTTTTCCTCAATTTTTGG
* * * ** * * *
128282 CAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCATAGACAATATATAATT
170 CCACAATT-CTCATGAAAA-------T--A----T----ATAA-T-TCAAAGA-AA-A-A-AA-G
** ***** ** * * ** *
128347 CAAAGAAAAAAGCTTGAAGGGTTTTTCAGGCTTCTAATATCGTTTTTCCAATTTTTTGCTGAATT
210 C-TTG-AAGGGTTTTTCAGGCTTCTAA----------TATCGTTTTTCC-ATTTTTTTCTGAATT
* *
128412 AATTTCGAATTAAATAGAAACACGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAAAGTGG
262 AATTTCGAATTAAATAGAAACATGATTCAAATGCTCGTAAAAACAAATCCTTAAATCCAAAGTGG
128477 CTGAG
327 CTGAG
* * * *
128482 ATTTGGTCAGATGAATATAAATATTTCAAGGAGTCTTTGTGCAAAAAATCATGCAAAACTAAGTC
1 ATTTGGTCAGATGAATATAGATATTTCAAGGAGTCTTCGTGCCAAAAATCATGCAAAACTGAGTC
* * * * *
128547 GGTGTCC-CGAAACGTGTGTTTAGCCTAAAACCGTGATGGAAAGTATACGATTTCTGCTAAAATT
66 GG-GGCCTCGAAACGCGTTTTTAGCTTAAAACCGTGATGGAAAGTACACGATTTCTGCTAAAATT
* *
128611 TTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAACTCTCATAAAATATATATA
130 TTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCATGAAA-ATATATA
* *** * * * * *
128676 ACTCAAATCCAAAAAGATCGAAGGGTTTTTCACGCTTTTAATATCGTTTTTCCAATTTTTTCTGA
194 ATTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCTAATATCGTTTTTCCATTTTTTTCTGA
* * * *
128741 ATTAATTTC-AAATAATATCGAAACATGATTC-GATGGTCGTAAAAACAAATCCTTAAATCCAAA
259 ATTAATTTCGAATTAA-ATAGAAACATGATTCAAATGCTCGTAAAAACAAATCCTTAAATCCAAA
128804 GTGGCTGAG
323 GTGGCTGAG
* * * * * * *
128813 ATTTGGTCAGATGAAGATAGGTAGTTCAAGGAGTCTTCGTACTAAAAATCATGCAAAACTGTGTT
1 ATTTGGTCAGATGAATATAGATATTTCAAGGAGTCTTCGTGCCAAAAATCATGCAAAACTGAGTC
* * * * *
128878 GGGGCCTCGAAACGCGATTTTAGCTTAAAATCGTGATGGATAGTGCACGATTTCGGCTAAAATTT
66 GGGGCCTCGAAACGCGTTTTTAGCTTAAAACCGTGATGGAAAGTACACGATTTCTGCTAAAATTT
*
128943 TGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCATAGACAATATATAA
131 TGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCAT-GAAAATATATAA
* *
129008 TTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCTAATATCGTTTTTGCATTTTTTTCTAAA
195 TTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCTAATATCGTTTTTCCATTTTTTTCTGAA
* * **
129073 TTAATTTCGAATTAAAAAGAAACACGATTCAAATGCTCGTAAAAACAAATCCTTAAATTGAAAGT
260 TTAATTTCGAATTAAATAGAAACATGATTCAAATGCTCGTAAAAACAAATCCTTAAATCCAAAGT
129138 GGCTGAG
325 GGCTGAG
* * * * * * * *
129145 AATTGGTCAAATGATTATAGATAGTTCAAGGAGTATTCGTGCTAAAAACCATGCAAAACTAAGTC
1 ATTTGGTCAGATGAATATAGATATTTCAAGGAGTCTTCGTGCCAAAAATCATGCAAAACTGAGTC
* * * * *
129210 GGGGGCTCGAAACGCGTTTTTAGCTTAAAATCGTGATGGATAGTGCACGATTTCGGCTAAAATTT
66 GGGGCCTCGAAACGCGTTTTTAGCTTAAAACCGTGATGGAAAGTACACGATTTCTGCTAAAATTT
*
129275 TGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCATAGACAATATATAA
131 TGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCAT-GAAAATATATAA
129340 TTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCTAATATCGTTTTTCCAATTTTATTT-TG
195 TTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCTAATATCGTTTTTCC-ATTTT-TTTCTG
* *
129404 AATTAATTTCGAATTAAAAAGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAAA
258 AATTAATTTCGAATTAAATAGAAACATGATTCAAATGCTCGTAAAAACAAATCCTTAAATCCAAA
129469 GTGGCTGAG
323 GTGGCTGAG
* * * * * *
129478 ATTTAGTCAGATGAAGATAGGTAGTTCAAGGAGTCTTCGTGCTAAAAATCATGCAAAACTAAGTC
1 ATTTGGTCAGATGAATATAGATATTTCAAGGAGTCTTCGTGCCAAAAATCATGCAAAACTGAGTC
* * * *
129543 GGGG-CTCCGAAACGCGTTTTTAGCTTAAAATCGTGATGGATAGTGCACGATTTCGGCTAAAATT
66 GGGGCCT-CGAAACGCGTTTTTAGCTTAAAACCGTGATGGAAAGTACACGATTTCTGCTAAAATT
* *
129607 TTGCAAAAATTGATCCGGAAAATTATTCCTCAATTTTTGGCCACAATTCTCATAGACAATATATA
130 TTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCAT-GAAAATATATA
* * *
129672 ATTTC-AAGAAAAAAAATCTTGAAGGGTTTTTCAGGCTTCTAATATCATTTTTCCAATTTTTTCT
194 A-TTCAAAG-AAAAAAAGCTTGAAGGGTTTTTCAGGCTTCTAATATCGTTTTTCCATTTTTTTCT
* *
129736 GAATTAATTTCGAATTAAAATA-AAACACGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCA
257 GAATTAATTTCGAATT-AAATAGAAACATGATTCAAATGCTCGTAAAAACAAATCCTTAAATCCA
*
129800 AAGTGCCTGAG
321 AAGTGGCTGAG
* * * * * *
129811 ATTTGGTCAGAAGAATATAAATATTTTAAGGAGTCTTTGTGCAAAAAATCATGCAAAACTAAGTC
1 ATTTGGTCAGATGAATATAGATATTTCAAGGAGTCTTCGTGCCAAAAATCATGCAAAACTGAGTC
* * * * *
129876 GGTGTCC-CGAAACGTGTTTTTTTGCCTAAAATC--G-T----A-T--ACGATTTCTGCTAAAAT
66 GG-GGCCTCGAAACGCG-TTTTTAGCTTAAAACCGTGATGGAAAGTACACGATTTCTGCTAAAAT
** * * * *
129930 TTTGCAAAAATTGATCATGAAGATTTTTCCTCAATTTTTGGCTACAACTCTCATAAAATATATAT
129 TTTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCATGAAA-ATATAT
* *** * * * * *
129995 AACTCAAATCCAAAAAGATCGAAGGGTTTTTCACGCTTTTAATATCGTTTTTCCAATTTTTTCTG
193 AATTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCTAATATCGTTTTTCCATTTTTTTCTG
* * * *
130060 AATTAATTTC-AAATAATATCTCGAAACATGATTC-GATGGTCGTAAAAACAAATCCTTAAATCC
258 AATTAATTTCGAATTAA-A--TAGAAACATGATTCAAATGCTCGTAAAAACAAATCCTTAAATCC
130123 AAAGTGGCTGAG
320 AAAGTGGCTGAG
* * * * * *
130135 AATTGGTCAGATGAAGATAGATAGTTCAAGGAGTCTTTGTGCTAAAAATCATGCAAAACTGTGTC
1 ATTTGGTCAGATGAATATAGATATTTCAAGGAGTCTTCGTGCCAAAAATCATGCAAAACTGAGTC
* * * * * *
130200 GGGACCCCGAAACGCGTTTTTAGCTTAAAATCGTGATGGATAGTGCACGATTTCGGCTAAAATTT
66 GGGGCCTCGAAACGCGTTTTTAGCTTAAAACCGTGATGGAAAGTACACGATTTCTGCTAAAATTT
* * * *
130265 TTCAAAACTTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCATAGACAGTATATAA
131 TGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCAT-GAAAATATATAA
* * *
130330 TTTC-AAGAGAAAAAGCTTGAAGGGTTTTTCAGGCTTCTAATACCGTTTTTCCAATTTTTTCCTG
195 -TTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCTAATATCGTTTTTCC-ATTTTTTTCTG
* * * *
130394 AATTAATTTAGAATTAAAAAGAAACACGATTCATACT-CTCGTAAAAACAAATCCTTAAATCCAA
258 AATTAATTTCGAATTAAATAGAAACATGATTCA-AATGCTCGTAAAAACAAATCCTTAAATCCAA
**
130458 AGTTCCTGAG
322 AGTGGCTGAG
* * * *
130468 ATTTGGTTAGATGATTATAGATATTTCAAGGAGTCTTCGTGCTAAAAATCATGCAAAACTAAGTC
1 ATTTGGTCAGATGAATATAGATATTTCAAGGAGTCTTCGTGCCAAAAATCATGCAAAACTGAGTC
* * * *
130533 GGGGGCTCGAAACGCGATTTTT-GCTT-AAACTCGTGATGGATAGTGCACGATTTCGGCTAAAAT
66 GGGGCCTCGAAACGCG-TTTTTAGCTTAAAAC-CGTGATGGAAAGTACACGATTTCTGCTAAAAT
*
130596 TTTGCAAAAATTGATCCGGAAAATTTTTCCTTAATTTTTGGCCACAATTCTCATAGAAAATATAT
129 TTTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCAT-GAAAATATAT
* *
130661 AATTTAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTATAATATCGTTTTTCCAATTTTTTTCT
193 AATTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCTAATATCGTTTTTCC-ATTTTTTTCT
* * *
130726 GAATTAATTTCGAATCAAA-ACGAAACATAATTCAGATGCTCGTAAAAACAAATCCTTAAATCCA
257 GAATTAATTTCGAATTAAATA-GAAACATGATTCAAATGCTCGTAAAAACAAATCCTTAAATCCA
130790 AAGTGGCTGAG
321 AAGTGGCTGAG
* * * * *
130801 ATTTGGTTAGATGAATATAGATAGTTCAAGGACTCTTCGTGCTAAAAATCATGCAAAATTGAGTC
1 ATTTGGTCAGATGAATATAGATATTTCAAGGAGTCTTCGTGCCAAAAATCATGCAAAACTGAGTC
* * * * * *
130866 GGGGCCTCGAAACGCGATTTTAACTTAAAATCGTGATGGATAGTGCACGATTTCGGCTAAAATTT
66 GGGGCCTCGAAACGCGTTTTTAGCTTAAAACCGTGATGGAAAGTACACGATTTCTGCTAAAATTT
* *
130931 TGCAAAAATTGATCCGGAAAGTTTTTCCTCAATTTTTGGCCACAATTCTCATAGACAATATATAA
131 TGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCAT-GAAAATATATAA
* *
130996 TTAAAAG-AAAAAAGCTTGAAGGGTTTTTCAGCCTTCTAATATCGTTTTTCCA-TTTTTT-TGAA
195 TTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCTAATATCGTTTTTCCATTTTTTTCTGAA
* * * *
131058 TTAATTTTGAATTAAATAGAAACAGGATACAAATGCTCGTAAAAACAAAACCTTAAATCCAAAGT
260 TTAATTTCGAATTAAATAGAAACATGATTCAAATGCTCGTAAAAACAAATCCTTAAATCCAAAGT
131123 GGCTGAG
325 GGCTGAG
* * * * * *
131130 ATTTGGTCAGATGAATATAAATATTTGAAGGAGTCTTTGTGCAAAAAATCATGGAAAACTAAGTC
1 ATTTGGTCAGATGAATATAGATATTTCAAGGAGTCTTCGTGCCAAAAATCATGCAAAACTGAGTC
* * * * *
131195 GGTGTCC-CGAAAGGTGTTTTTAGCCTAAAACCGTGATGGAAAGTATACGATTTCTGCTAAAATT
66 GG-GGCCTCGAAACGCGTTTTTAGCTTAAAACCGTGATGGAAAGTACACGATTTCTGCTAAAATT
* * * *** *
131259 TTGTAAAAATTGATCTGGAAAATTTTTCTTCAATTTTTGGCCACAACAATCATAAAATATATATA
130 TTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCATGAAA-ATATATA
* *** * * * * * *
131324 ACTCAAATCCAAAAAGATCGAACGCTTTTTCACGCTTTTAATATCGTTTTTCCAATTTTTTT-TG
194 ATTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCTAATATCGTTTTTCC-ATTTTTTTCTG
* * * * * *
131388 AATTAATTTC-AAATAATATCGAAACATGATTC-GATGGTCGTAAAATCAAATCATTAAATCCAA
258 AATTAATTTCGAATTAA-ATAGAAACATGATTCAAATGCTCGTAAAAACAAATCCTTAAATCCAA
131451 AGTGGCTGAG
322 AGTGGCTGAG
* * * * *
131461 ATTTGATCAGATGAAGATAGATAGTTCAAGGAGTCTTCGTGCTAAAAATCATGCAAAACTGGGTC
1 ATTTGGTCAGATGAATATAGATATTTCAAGGAGTCTTCGTGCCAAAAATCATGCAAAACTGAGTC
* * * * * **
131526 GTGGCCCCGAAACGCGTTTTTAGTTTAAAATCGTGATGGATAA-TGCACGATTTAGGCTAAAATT
66 GGGGCCTCGAAACGCGTTTTTAGCTTAAAACCGTGATGGA-AAGTACACGATTTCTGCTAAAATT
* * *
131590 TTGCAAAAATTGATCCGGAAAATTTTTCTTCAATTTTTGACCACAATTCTCATAGAAAATGTATA
130 TTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCAT-GAAAATATATA
*
131655 ATTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTATAATATCGTTTTTCCAATTTTTTTCTG
194 ATTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCTAATATCGTTTTTCC-ATTTTTTTCTG
* * ** * *
131720 AATTAATTTCAAATTAAAAAGAAACACAATTCATATGCTCGT-AAAATAAATCCTTAAATCCAAA
258 AATTAATTTCGAATTAAATAGAAACATGATTCAAATGCTCGTAAAAACAAATCCTTAAATCCAAA
*
131784 GTGCCTGAG
323 GTGGCTGAG
* * * * *
131793 ATATGGTTAGATGAATATAGATAGTTCAAGGAGTCTTCGTGCTAAATATCATGCAAAACTGAGTC
1 ATTTGGTCAGATGAATATAGATATTTCAAGGAGTCTTCGTGCCAAAAATCATGCAAAACTGAGTC
* * * * **
131858 GGGGCCTCGAAACGCGATTTTAGCTTAAAATCGTGATGGATAGTGCACGATTTAAGCTAAAATTT
66 GGGGCCTCGAAACGCGTTTTTAGCTTAAAACCGTGATGGAAAGTACACGATTTCTGCTAAAATTT
* * *
131923 TCCAAAAATTTATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCATAGACAATATATAA
131 TGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCAT-GAAAATATATAA
* *
131988 TTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCTAATATCATTTTTCCAATTTTTTCTGAA
195 TTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCTAATATCGTTTTTCCATTTTTTTCTGAA
* * * *
132053 TTAATTTCGAATTAAAAAGAAACACGATTCAGATGCTCATAAAAACAAATCCTTAAATCCAAAGT
260 TTAATTTCGAATTAAATAGAAACATGATTCAAATGCTCGTAAAAACAAATCCTTAAATCCAAAGT
132118 GGCTGAG
325 GGCTGAG
* * * * * *
132125 ATTTGGTTAGATAAATATAGATAGTTCAAGGAGTCTTCGTGCTAAATATCATGCAAAACTGTGTC
1 ATTTGGTCAGATGAATATAGATATTTCAAGGAGTCTTCGTGCCAAAAATCATGCAAAACTGAGTC
* * * * *
132190 GGGGCCTCGAAACGCGATTTTAGCTTAAAATCGTGATGGATAGTGCACGATTTCGGCTAAAATTT
66 GGGGCCTCGAAACGCGTTTTTAGCTTAAAACCGTGATGGAAAGTACACGATTTCTGCTAAAATTT
**
132255 TGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCATAGGCAATATATAA
131 TGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCAT-GAAAATATATAA
*
132320 TTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCTAATATCGTTTTTCCATTTTTTGCTGAA
195 TTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCTAATATCGTTTTTCCATTTTTTTCTGAA
* * ** *
132385 TTAATTTTGAATTAAATAGAAACATGATACAAAACCTCGTAAAAACAAAACCTTAAATCCAAAGT
260 TTAATTTCGAATTAAATAGAAACATGATTCAAATGCTCGTAAAAACAAATCCTTAAATCCAAAGT
132450 GGCTGAG
325 GGCTGAG
*
132457 ATTTGGTCAGATGAATATAAATATTTCAAGGAGTCTT
1 ATTTGGTCAGATGAATATAGATATTTCAAGGAGTCTT
132494 TGT
Statistics
Matches: 6922, Mismatches: 1103, Indels: 860
0.78 0.12 0.10
Matches are distributed among these distances:
301 20 0.00
302 19 0.00
303 6 0.00
304 1 0.00
306 1 0.00
307 1 0.00
308 1 0.00
309 44 0.01
310 140 0.02
311 7 0.00
312 3 0.00
313 4 0.00
314 4 0.00
315 3 0.00
316 3 0.00
317 2 0.00
318 2 0.00
319 4 0.00
320 3 0.00
321 13 0.00
322 244 0.04
323 289 0.04
324 182 0.03
325 15 0.00
326 5 0.00
327 6 0.00
328 14 0.00
329 434 0.06
330 245 0.04
331 1226 0.18
332 1484 0.21
333 1489 0.22
334 111 0.02
335 7 0.00
336 1 0.00
337 1 0.00
338 3 0.00
339 8 0.00
340 6 0.00
341 8 0.00
342 2 0.00
343 18 0.00
344 2 0.00
345 2 0.00
346 4 0.00
347 4 0.00
348 6 0.00
349 2 0.00
350 20 0.00
351 8 0.00
352 19 0.00
353 16 0.00
354 39 0.01
355 33 0.00
356 18 0.00
357 19 0.00
358 25 0.00
359 11 0.00
360 6 0.00
361 22 0.00
362 41 0.01
363 14 0.00
364 2 0.00
365 4 0.00
366 1 0.00
367 9 0.00
368 30 0.00
369 31 0.00
370 6 0.00
371 5 0.00
372 1 0.00
373 44 0.01
374 5 0.00
375 5 0.00
376 2 0.00
377 7 0.00
378 9 0.00
379 11 0.00
380 14 0.00
381 3 0.00
382 3 0.00
383 1 0.00
384 2 0.00
385 7 0.00
386 11 0.00
387 4 0.00
388 2 0.00
389 3 0.00
390 25 0.00
391 28 0.00
392 139 0.02
393 5 0.00
394 5 0.00
395 8 0.00
396 5 0.00
397 4 0.00
398 1 0.00
399 1 0.00
400 12 0.00
404 1 0.00
406 1 0.00
407 6 0.00
408 4 0.00
409 1 0.00
410 3 0.00
411 1 0.00
412 5 0.00
413 2 0.00
415 2 0.00
417 1 0.00
418 10 0.00
419 3 0.00
420 3 0.00
421 7 0.00
422 6 0.00
423 8 0.00
424 7 0.00
425 6 0.00
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.33
Consensus pattern (331 bp):
ATTTGGTCAGATGAATATAGATATTTCAAGGAGTCTTCGTGCCAAAAATCATGCAAAACTGAGTC
GGGGCCTCGAAACGCGTTTTTAGCTTAAAACCGTGATGGAAAGTACACGATTTCTGCTAAAATTT
TGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCATGAAAATATATAAT
TCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCTAATATCGTTTTTCCATTTTTTTCTGAAT
TAATTTCGAATTAAATAGAAACATGATTCAAATGCTCGTAAAAACAAATCCTTAAATCCAAAGTG
GCTGAG
Found at i:125635 original size:994 final size:979
Alignment explanation
Indices: 123708--132496 Score: 7986
Period size: 995 Copynumber: 8.7 Consensus size: 979
123698 AGCCAAAAAA
* *
123708 ATTTGGTCAAATGAATATAGATATTTCAAGGAGTCTCCGTGCCAAAAATCATGCAAAACTGAG-C
1 ATTTGGTCAGATGAATATAGATATTTCAAGGAGTCTTCGTGCCAAAAATCATGCAAAACTGAGTC
* * *
123772 TGAGGCCTCGAAACGCGTTTTTAGCTGAAAACCTTGATGAAAAGTACACGATTTC-GACTAAAAT
66 -GGGGCC-CGAAACGCGTTTTTAGCT-AAAA-CGTGATGGAAAGTACACGATTTCTG-CTAAAAT
* *
123836 TTTGCAAAAATTGATTCGGAAAATTTTTCCTCACTTTTTGGCCAAAATTCTTATAAAAATATATA
126 TTTGCAAAAATTGATCCGGAAAATTTTTCCTCA-ATTTTGGCC-AAATTC-TAT--AAATATATA
* * * ** *
123901 ATTCAAAGACAAAAAGATTGAAGGGCTTTTAAGGCTTCTAATAAAGTTTTTCCA-ATTTTTTCTG
186 ATTCAAAGAAAAAAAGCTTGAAGGG-TTTTCAGGCTTCTAATATCGTTTTTCCATTTTTTTTCTG
* * *
123965 AATTAATTTCTAATTAAATAGAAACATGATTCAGATGCTTGT-AAAACAAATCCTTAAAACAAAA
250 AATTAATTTCGAATTAAATAGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAAACCAAA
* * * *
124029 GTGGCCT-AAATTTGGTCAGATGAATATAGATATTTTGAAGGAGTTTTCGTGCCAAAAATCATGC
315 GTGG-CTGAGATTTGGTCAGATGAATATAGATA-TTTCAAGGAGTCTTCGTGCAAAAAATCATGC
* * * *
124093 AACACTCAGTCGGGGCATCGAAACGTGTTTTTAGTTTAAAACCGTGATGGATAGTGCACGATTTC
378 AAAACT-AGTCGGGGCCTCGAAACGTGTTTTTAGCTTAAAACCGTGATAGATAGTGCACGATTTC
** *
124158 GGCTAAAATTTTGCAAAAATTGATCCTAAAAATTTTTCGC-CAATTTTTTGCCACAATTCTC-TC
442 GGCTAAAATTTTGCAAAAATTGATCCGGAAAATTTTTC-CTCAATTTTTGGCCACAATTCTCAT-
* *
124221 AGAAAATATATAATTCAAAGACAAAAAGCTTGAAAGG-TTTTCAGGCTTTTAATATCGTTTTTTC
505 AG-AAATATATAATTAAAAGA-AAAAAGCTTGAAGGGTTTTTCAGGCTTTTAATATCG-TTTTTC
* * * * * *
124285 AATTTTTTTCTTAATTAATTTTGAATTAAGTAGAGACATGCTACAAATGCTTGTAAAAACAAATC
567 CATTTTTTTCTGAATTAATTTTGAATTAAATAGAAACATGATACAAATGCTCGTAAAAACAAATC
*
124350 CTTAAATCCAAAGTGGCTGAGATTTTGTCAGATGAATATAAATATTTCAAGGAGTCTTT-TGCAA
632 CTTAAATCCAAAGTGGCTGAGATTTGGTCAGATGAATATAAATATTTCAAGGAGTCTTTGTGCAA
* * * * *
124414 AATATCGTGCACAACAAAGTTGGTGTCCTGAAACGTGTTTTTAGCTTAAAGCCGTGATGGAAACT
697 AA-ATCATGCA-AACTAAGTCGGTGTCC-GAAACGTGTTTTTAGCTTAAAACCGTGATGGAAAGT
*
124479 ATACGATTTCTGCTAAAATTTTGCAAAAATTGATACGGAGAATTTTTCCTCAATTTTTGGCCACA
759 ATACGATTTCTGCTAAAATTTTGCAAAAATTGATACGGAAAATTTTTCCTCAATTTTTGGCCACA
*
124544 ACTCTCATAAAATATATATAATTCAAAGCCAAAAAGATTGAAGGGTTTTTCACGCTTCTAATATC
824 ACTCTCATAAAATATATATAATTCAAA-CCAAAAAGATCGAAGGGTTTTTCACGCTTCTAATATC
**
124609 GTTTTTCCAATTTTTCCAAAATTAATTTCAAATAAAATCGAAACATGATTCAGATGCTCGTAAAA
888 GTTTTTCCAATTTTT-CTGAATTAATTTCAAATAAAATCGAAACATGATTCAGATGCTCGTAAAA
*
124674 ACAAATCCTTGAATCCAAAGTGGCTGAG
952 ACAAATCCTTAAATCCAAAGTGGCTGAG
* *
124702 ATTTGGTCAGATGAAGATAGATAGTTCAAGGAGTCTTCGTGCCAAAAATCATGCAAAACTGAGTC
1 ATTTGGTCAGATGAATATAGATATTTCAAGGAGTCTTCGTGCCAAAAATCATGCAAAACTGAGTC
* *
124767 GGGGCTCCGAAACGCGTTTTTAGCGTAAAATCGTGATGGATAGTGCACGATTTCTGCTAAAATTT
66 GGGGC-CCGAAACGCGTTTTTAGC-TAAAA-CGTGATGGAAAGTACACGATTTCTGCTAAAATTT
*
124832 TGCAAAAATTGATCCGGAAAATTTTTTCTCAATTTTGGGCCACAATTCTCATTGACAATATATAA
128 TGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTT-GGCCA-AATTCT-A-T-A-AATATATAA
*
124897 TTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCTAATATCGTTTCTCCATTTTTTTTCTGA
187 TTCAAAGAAAAAAAGCTTGAAGGG-TTTTCAGGCTTCTAATATCGTTTTTCCATTTTTTTTCTGA
* * *
124962 ATTAATTTCGAATTAAAAAGAAACACGATTCAGATGCTCGTAAAAACAAATCCTTAAAACCAAAT
251 ATTAATTTCGAATTAAATAGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAAACCAAAG
* * *
125027 TGGCTGAGATTTGGTCAGATGAATATAGATAGTTCAAGGAGTCTTCGTGCTAAAACTCATGCAAA
316 TGGCTGAGATTTGGTCAGATGAATATAGATATTTCAAGGAGTCTTCGTGCAAAAAATCATGCAAA
* * *
125092 ACTGAGTTGGGGCCTCGAAACGCGTTTTTAGCTTAAAATCGTGATAGATAGTGCACGATTTCGGC
381 ACT-AGTCGGGGCCTCGAAACGTGTTTTTAGCTTAAAACCGTGATAGATAGTGCACGATTTCGGC
*
125157 TAAAATTTTGCAAAAATTGATCCGGAAAATTTTTCTTCAATTTTTGGCCACAATTCTCATAGACA
445 TAAAATTTTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCATAGA-A
125222 ATATATAATTAAAAGAAACAAAGCTTGAAGGGTTTTTCAGGCTTTTAATATCGTTTTTCCATTTT
509 ATATATAATTAAAAGAAA-AAAGCTTGAAGGGTTTTTCAGGCTTTTAATATCGTTTTTCCATTTT
*
125287 TTTCTGAATTAATTTTGAATTAAAT-GAAACATGATACAAATGCTCGTAAAAATAAA-CCTTAAA
573 TTTCTGAATTAATTTTGAATTAAATAGAAACATGATACAAATGCTCGTAAAAACAAATCCTTAAA
125350 TCCAAAGTGGCTGAGATTTGGTCAGATGAATATAAATATTTCAAGGAGTCTTTGTGCAAAAAGTC
638 TCCAAAGTGGCTGAGATTTGGTCAGATGAATATAAATATTTCAAGGAGTCTTTGTGCAAAAA-TC
*
125415 ATGCAAACTAAGTCGGTGTTCCGAAACGTGTTTTTAGCCTAAAACCGTGATGGAAAGTATACGAT
702 ATGCAAACTAAGTCGGTG-TCCGAAACGTGTTTTTAGCTTAAAACCGTGATGGAAAGTATACGAT
*
125480 TTCTGCTAAAATTTTGCAAAAATTGATTCGGAAAATTTTTCCTCAATTTTTGGCCACAACTCTCA
766 TTCTGCTAAAATTTTGCAAAAATTGATACGGAAAATTTTTCCTCAATTTTTGGCCACAACTCTCA
* *
125545 TAAAATATATATAACTCAAATCCAAAAAGATCGAAGGGTTTTTCACGCTTCTAATATTGTTTTTC
831 TAAAATATATATAATTCAAA-CCAAAAAGATCGAAGGGTTTTTCACGCTTCTAATATCGTTTTTC
* *
125610 CAATTTTATCTGAATTAATTTCAAATAATATCGAAACATGATTC-GATGGTCGTAAAAACAAATC
895 CAATTTT-TCTGAATTAATTTCAAATAAAATCGAAACATGATTCAGATGCTCGTAAAAACAAATC
*
125674 CTTAAATCCAATGTGGCTGAG
959 CTTAAATCCAAAGTGGCTGAG
* * * * * *
125695 ATTTGGTTAGATAAATATAAATATTTCAAGAAGTCTTCTTGCCAAAAATCATGCAAAACTGTGTC
1 ATTTGGTCAGATGAATATAGATATTTCAAGGAGTCTTCGTGCCAAAAATCATGCAAAACTGAGTC
* * *
125760 GGGGCCCCGAAATGCTTTTTTAGCTTAAAACTGTGATGGAAAGTATACGATTT-TGGCTAAAATT
66 GGGG-CCCGAAACGCGTTTTTAGC-TAAAAC-GTGATGGAAAGTACACGATTTCT-GCTAAAATT
* * * *
125824 TTGC-TAAATTGAACC-GAAAGATTTTTCCTC-A---T----AAA--ATATATATA-ATAA-T--
127 TTGCAAAAATTGATCCGGAAA-ATTTTTCCTCAATTTTGGCCAAATTCTATAAATATATAATTCA
* * * * *
125873 AAGATAAAAAGCTTGAAAGGTTTTCAGACTTTTAATATCGTTTTTCCAATTTATTTT-T-AATTA
191 AAGAAAAAAAGCTTGAAGGGTTTTCAGGCTTCTAATATCGTTTTTCC-ATTTTTTTTCTGAATTA
* * * * * *
125936 GTTTTGAATTAAATAGAAACATGATACAAATGCTCGTAAAAAGAAATCCTTAAATCCAAAGTGGC
255 ATTTCGAATTAAATAGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAAACCAAAGTGGC
* *
126001 TGAGATTTGGTCAGATGAATATAAATATTTCAAGGAGTCTTTGTGCAAAAAATCATGCAAAACTA
320 TGAGATTTGGTCAGATGAATATAGATATTTCAAGGAGTCTTCGTGCAAAAAATCATGCAAAACTA
* * *
126066 TGTCGGTGTCC-CGAAATGTGTTTTTAGCTTAAAGCCGTGATACGAT--T------TTT--GCTA
385 -GTCGG-GGCCTCGAAACGTGTTTTTAGCTTAAAACCGTGATA-GATAGTGCACGATTTCGGCTA
* * *
126120 AAATTTTGCAAAAATTGATTCGGAAAATTTTTCCTCAATTTTCGGCCACAACTCTCATA-AAATA
447 AAATTTTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCATAGAAAT-
* * * * * *
126184 CATATAATTTAAAGGAAAAAAGATCGAAGGGTTTTTCACGCTTTTAATATCGTTTCTCCAATTTT
511 -ATATAA-TTAAAAGAAAAAAGCTTGAAGGGTTTTTCAGGCTTTTAATATCGTTTTTCCATTTTT
* * *
126249 TTCTGAATTAATTTCGAATTAAATGGAAACATGATTCAAATGCTCGTAAAAACAAATCCTTAAAT
574 TTCTGAATTAATTTTGAATTAAATAGAAACATGATACAAATGCTCGTAAAAACAAATCCTTAAAT
* * *
126314 CCAAAGTGGCTGAGATTTGGTCAGATGAATATAGATAGTTCAAGGAGTCTTCGTGCCAAAAATCA
639 CCAAAGTGGCTGAGATTTGGTCAGATGAATATAAATATTTCAAGGAGTCTTTGTG-CAAAAATCA
* * ** * * * **
126379 TGCAAAACTGAGTCGGTGCCTCGAAACACGTGTTTAGCTTAAAATCGTGATGGATAGTGCACGAT
703 TGC-AAACTAAGTCGGTGTC-CGAAACGTGTTTTTAGCTTAAAACCGTGATGGAAAGTATACGAT
** * * * *
126444 TTGAGCTAAAATTTTGCAAAAATTCATCCGGAAAATTTTTCCTTAATTTTTGGCCACAATTCTCA
766 TTCTGCTAAAATTTTGCAAAAATTGATACGGAAAATTTTTCCTCAATTTTTGGCCACAACTCTCA
* ** * * *
126509 TAGACA-ATATATAATTCAAAGGAAAAAAATCTGGAAGGGTTATTCAGGCTT-TCAATATCGTTT
831 TA-AAATATATATAATTCAAACCAAAAAGATC--GAAGGGTTTTTCACGCTTCT-AATATCGTTT
* ** * * * *
126572 TTCCATTTTTTTCTGAATTAATTTTGAATTAAATAGAAACATGATACAAATGCTCGTAAAAACAA
892 TTCCA-ATTTTTCTGAATTAATTTCAAATAAAATCGAAACATGATTCAGATGCTCGTAAAAACAA
* ** ** *
126637 AACCTTAATTTTGAATTAAATAGAAGCATGATACAA
956 ATCCTT-A-----AATCCAA-AGTGGC-TG----AG
* * * * * * * * **
126673 ATGCTCGTAAACACA-AAACTTTAAATCCAAAGTGGTTGAGATTTGGTTAGATGAATATAAATAA
1 AT-TTGGT---CAGATGAA-TATAGAT----A-T--TTCA-A---GG--AG-T--CT-T-CGT--
** * * * * * *
126737 TTCAAGGATTATTCGTGCAAAACTGAGTCGGTGTCCCAAAACGCGTTTTTAGCTTAAAGTCTTGA
41 GCCAA--A--AATCATGCAAAACTGAGTCGG-GGCCCGAAACGCGTTTTTAGC-TAAA-ACGTGA
** * * * * * * * * * *
126802 TAAAAAGTATACGATTTCGGCTAATATTTTACAAAAATTGATCAGGGAAATTTTTGGCACAACTC
99 TGGAAAGTACACGATTTCTGCTAAAATTTTGCAAAAATTGATCCGGAAAATTTTT-CCTCAATTT
* * * * * * *
126867 T---C--ATAC-AAAAATATATAATTCATAGCCAAAAAATTTTGGTCAAATGAATATAGATATTT
163 TGGCCAAATTCTATAAATATATAATTCAAAG--AAAAAA----AG-C--TTG-A-A-GGGT-TTT
* ***** * ***** ** *
126926 CAAGGAGTCTTCGTGCCAAAAATCATGCAAAACAGAGCCGGTGCCTCGAA-AAATTGATTCGGAA
215 C-A-G-G-CTTC-T----AATATC--GTTTTTC-CATTTTTTTTCT-GAATTAA-T--TTC-GAA
* ***** ** * * * * * ** * *
126990 --AATTTTTCCTCACTTTTTGGCCAAAATTCTCATAAAAATATATAATTCAAAGACAAAAAGATT
263 TTAA-ATAGAAACA-TGATT---C-AGATGCTCGTAAAAACAAATCCTT-AAA-AC-CAAAG-TG
** * * * * *
127053 GAAGGGCTTTTAAGGATTCTAATATCGTTTTTCCAATTTTTTCTGAATTAATTTCGAATTAAATA
318 GCTGAG-ATTT--GG--TC--AGAT-G-------AA---TAT-AG-A-T-ATTTC-------A-A
* * * * * ** * * *** * *
127118 GAAACATGATTCATATGCGTGTAAAAACAAATCCT-TAAAACAAAACTGAGTCGGGGCATCGAAA
353 G------GAGTC-T-T-CGTG--CAAA-AAATCATGCAAAACTAGTC-GGGGCCTCGAAACG---
* ** **** ** ** * *
127182 CGCGTTTTTAGTTTAAAACCGTGATGGATAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGA
402 TGTTTTTAGCTTAAAACC--GTGATAGATAGTGCACGATTTCGGCTAAAATTTTGCAAAAATTGA
* * *
127247 TCCGAAAAATTTTTCCCCAATTTTTGGCCACAATTCTC-TCAGAAAATATATAATTCAAAGACAA
465 TCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCAT-AG-AAATATATAATTAAAAGA-AA
* * * *
127311 AAAGCTTGAAAGGTTTTTAAGGCTTTTAATATCGTTTTTCCAATTTTTTCTTAATTAATTTTGAA
527 AAAGCTTGAAGGGTTTTTCAGGCTTTTAATATCGTTTTTCCATTTTTTTCTGAATTAATTTTGAA
* ** * * **
127376 TTAAGTTTAAACATGCTACAAATGATTATAAAAACAAATCCTTAAATCCAAAGTGGCTGAGATTT
592 TTAAATAGAAACATGATACAAATGCTCGTAAAAACAAATCCTTAAATCCAAAGTGGCTGAGATTT
* * * * * *
127441 TGTCCGATGAATATAAATATTTCAAGGAGTCTTTGTGCAAAATATCGTGCAGAACAAATTTGGTG
657 GGTCAGATGAATATAAATATTTCAAGGAGTCTTTGTGCAAAA-ATCATGCA-AACTAAGTCGGTG
* * *
127506 TCCTGAAACGTGTTTTTGGCTTAAAGCCGTGATGGAAAATATACGATTTCTGCTAAAATTTTGCA
720 TCC-GAAACGTGTTTTTAGCTTAAAACCGTGATGGAAAGTATACGATTTCTGCTAAAATTTTGCA
* * *
127571 AAAATTGATACGGAGAATTTGTCCTCAATTTTTGGCCACAAGTCTCATAAAATATATATAATTCA
784 AAAATTGATACGGAAAATTTTTCCTCAATTTTTGGCCACAACTCTCATAAAATATATATAATTCA
* * ** *
127636 AAGCCAAAAAGATTGAAGGG-TTTTCACGCTTCTAATATCGTTATTCCAATTTTT-T-TCTGAA-
849 AA-CCAAAAAGATCGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCAATTTTTCTGAATTAAT
*
127697 TT--AAT---ATCGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAGAGTGGCTG
913 TTCAAATAAAATCGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAAAGTGGCTG
127757 AG
978 AG
* * * *
127759 ATTTGGTCAGATGAAGATAGATAGTTCAAGGAGTCTTCGTGCTAAAAATCATGCAAAACTGAGCC
1 ATTTGGTCAGATGAATATAGATATTTCAAGGAGTCTTCGTGCCAAAAATCATGCAAAACTGAGTC
* ** * *
127824 GGGGCCTCGAAACACGTTTTTAGCTTTAAATTGTGAT-AAATAGTGCACGATTTCTGCTAAAATT
66 GGGGCC-CGAAACGCGTTTTTAGC--TAAAACGTGATGGAA-AGTACACGATTTCTGCTAAAATT
* * *
127888 TTGCAAAAATTGATTCGGAAATTTTTTCCTCAATTTTTGGCCAAAACTCTCATAAAATATATATA
127 TTGCAAAAATTGATCCGGAAAATTTTTCCTCAA-TTTTGGCC-AAA-T-TC-TATAA-ATATATA
* *** * * * * * * *
127953 ACTCAAATCCAAAAAGATCGAAGGGTTTTTCACGCTTTTAATATCATTTTTCCAATTTTTTT-GG
186 ATTCAAAGAAAAAAAGCTTGAAGGG-TTTTCAGGCTTCTAATATCGTTTTTCCATTTTTTTTCTG
* * * *
128017 AATTAATTTC-AAATAATATCGAAACATGATTC-GATGGTCGTAAAAACAAATCCTTAAATCCAA
250 AATTAATTTCGAATTAA-ATAGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAAACCAA
* * * * * *
128080 AGTGGCTGGGATTTGGTCAGATGAAGATAGGTAGTTCAATGAGTCTTCGTGCTAAAAATCATGCA
314 AGTGGCTGAGATTTGGTCAGATGAATATAGATATTTCAAGGAGTCTTCGTGCAAAAAATCATGCA
* * * **
128145 AAACTAAGTCGGGGCCCCGAAACGCGTTTTTAGCTTAAAATCGTGATGCGTAACCCGACTCTTTG
379 AAACT-AGTCGGGGCCTCGAAACGTGTTTTTAGCTTAAAACCGTGA----T-A---GA-T-AGTG
* * * * * ** *
128210 AATTGAGTACCTACGACTGTGGAATGCCTATTTTATTAAAATAGATAGTGCACGATTTCGGCTAA
433 CA-CGA-T---TTCGGC--T--AA-----AATTT-TGCAAA-A-AT--T----GA-TCCGG--AA
* * *** *
128275 AAATTTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCATAGACAATA
472 AATTTTTCCTCAATT--T------T----------------TGGCCACAATTCTCATAGA-AATA
* * *
128340 TATAATTCAAAGAAAAAAGCTTGAAGGGTTTTTCAGGCTTCTAATATCGTTTTTCCAATTTTTTG
512 TATAATTAAAAGAAAAAAGCTTGAAGGGTTTTTCAGGCTTTTAATATCGTTTTTCC-ATTTTTTT
* * * *
128405 CTGAATTAATTTCGAATTAAATAGAAACACGATTCAGATGCTCGTAAAAACAAATCCTTAAATCC
576 CTGAATTAATTTTGAATTAAATAGAAACATGATACAAATGCTCGTAAAAACAAATCCTTAAATCC
128470 AAAGTGGCTGAGATTTGGTCAGATGAATATAAATATTTCAAGGAGTCTTTGTGCAAAAAATCATG
641 AAAGTGGCTGAGATTTGGTCAGATGAATATAAATATTTCAAGGAGTCTTTGTGC-AAAAATCATG
* *
128535 CAAAACTAAGTCGGTGTCCCGAAACGTGTGTTTAGCCTAAAACCGTGATGGAAAGTATACGATTT
705 C-AAACTAAGTCGGTGT-CCGAAACGTGTTTTTAGCTTAAAACCGTGATGGAAAGTATACGATTT
*
128600 CTGCTAAAATTTTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAACTCTCATA
768 CTGCTAAAATTTTGCAAAAATTGATACGGAAAATTTTTCCTCAATTTTTGGCCACAACTCTCATA
* *
128665 AAATATATATAACTCAAATCCAAAAAGATCGAAGGGTTTTTCACGCTTTTAATATCGTTTTTCCA
833 AAATATATATAATTCAAA-CCAAAAAGATCGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCA
* *
128730 ATTTTTTCTGAATTAATTTCAAATAATATCGAAACATGATTC-GATGGTCGTAAAAACAAATCCT
897 A-TTTTTCTGAATTAATTTCAAATAAAATCGAAACATGATTCAGATGCTCGTAAAAACAAATCCT
128794 TAAATCCAAAGTGGCTGAG
961 TAAATCCAAAGTGGCTGAG
* * * * * * *
128813 ATTTGGTCAGATGAAGATAGGTAGTTCAAGGAGTCTTCGTACTAAAAATCATGCAAAACTGTGTT
1 ATTTGGTCAGATGAATATAGATATTTCAAGGAGTCTTCGTGCCAAAAATCATGCAAAACTGAGTC
* * * *
128878 GGGGCCTCGAAACGCGATTTTAGCTTAAAATCGTGATGGATAGTGCACGATTTCGGCTAAAATTT
66 GGGGCC-CGAAACGCGTTTTTAGC-TAAAA-CGTGATGGAAAGTACACGATTTCTGCTAAAATTT
128943 TGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCATAGACAATATATAA
128 TGCAAAAATTGATCCGGAAAATTTTTCCTCAA-TTTTGGCCA-AATTCT-AT--A-AATATATAA
* *
129008 TTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCTAATATCGTTTTTGCA-TTTTTTTCTAA
187 TTCAAAGAAAAAAAGCTTGAAGGG-TTTTCAGGCTTCTAATATCGTTTTTCCATTTTTTTTCTGA
* * * ***
129072 ATTAATTTCGAATTAAAAAGAAACACGATTCAAATGCTCGTAAAAACAAATCCTTAAATTGAAAG
251 ATTAATTTCGAATTAAATAGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAAACCAAAG
* * * * * * *
129137 TGGCTGAGAATTGGTCAAATGATTATAGATAGTTCAAGGAGTATTCGTGCTAAAAACCATGCAAA
316 TGGCTGAGATTTGGTCAGATGAATATAGATATTTCAAGGAGTCTTCGTGCAAAAAATCATGCAAA
* * * *
129202 ACTAAGTCGGGGGCTCGAAACGCGTTTTTAGCTTAAAATCGTGATGGATAGTGCACGATTTCGGC
381 ACT-AGTCGGGGCCTCGAAACGTGTTTTTAGCTTAAAACCGTGATAGATAGTGCACGATTTCGGC
129267 TAAAATTTTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCATAGACA
445 TAAAATTTTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCATAGA-A
* *
129332 ATATATAATTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCTAATATCGTTTTTCCAATTT
509 ATATATAATTAAAAG-AAAAAAGCTTGAAGGGTTTTTCAGGCTTTTAATATCGTTTTTCC-ATTT
* * * *
129397 TATTT-TGAATTAATTTCGAATTAAAAAGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTA
572 T-TTTCTGAATTAATTTTGAATTAAATAGAAACATGATACAAATGCTCGTAAAAACAAATCCTTA
* * ** * *
129461 AATCCAAAGTGGCTGAGATTTAGTCAGATGAAGATAGGTAGTTCAAGGAGTCTTCGTGCTAAAAA
636 AATCCAAAGTGGCTGAGATTTGGTCAGATGAATATAAATATTTCAAGGAGTCTTTGTGC-AAAAA
* * * * **
129526 TCATGCAAAACTAAGTCGGGGCTCCGAAACGCGTTTTTAGCTTAAAATCGTGATGGATAGTGCAC
700 TCATGC-AAACTAAGTCGGTG-TCCGAAACGTGTTTTTAGCTTAAAACCGTGATGGAAAGTATAC
* * * *
129591 GATTTCGGCTAAAATTTTGCAAAAATTGATCCGGAAAATTATTCCTCAATTTTTGGCCACAATTC
763 GATTTCTGCTAAAATTTTGCAAAAATTGATACGGAAAATTTTTCCTCAATTTTTGGCCACAACTC
* * *
129656 TCATAGACAATATATA-ATTTCAAGA--AAAAAAATCTTGAAGGGTTTTTCAGGCTTCTAATATC
828 TCATA-A-AATATATATAATTCAA-ACCAAAAAGATC--GAAGGGTTTTTCACGCTTCTAATATC
* * * *
129718 ATTTTTCCAATTTTTTCTGAATTAATTTCGAATTAAAAT-AAAACACGATTCAGATGCTCGTAAA
888 GTTTTTCCAA-TTTTTCTGAATTAATTTC-AAATAAAATCGAAACATGATTCAGATGCTCGTAAA
*
129782 AACAAATCCTTAAATCCAAAGTGCCTGAG
951 AACAAATCCTTAAATCCAAAGTGGCTGAG
* * * * * *
129811 ATTTGGTCAGAAGAATATAAATATTTTAAGGAGTCTTTGTGCAAAAAATCATGCAAAACTAAGTC
1 ATTTGGTCAGATGAATATAGATATTTCAAGGAGTCTTCGTGCCAAAAATCATGCAAAACTGAGTC
* * *
129876 GGTGTCCCGAAACGTGTTTTTTTGCCTAAAA--TCG-T----A-T--ACGATTTCTGCTAAAATT
66 GG-GGCCCGAAACGCG-TTTTTAG-CTAAAACGT-GATGGAAAGTACACGATTTCTGCTAAAATT
** * * *
129931 TTGCAAAAATTGATCATGAAGATTTTTCCTCAATTTTTGGCTACAACTCTCATAAAATATATATA
127 TTGCAAAAATTGATCCGGAAAATTTTTCCTCAA-TTTTGGC--CAAAT-TC-TATAA-ATATATA
* *** * * * * *
129996 ACTCAAATCCAAAAAGATCGAAGGGTTTTTCACGCTTTTAATATCGTTTTTCCA-ATTTTTTCTG
186 ATTCAAAGAAAAAAAGCTTGAAGGG-TTTTCAGGCTTCTAATATCGTTTTTCCATTTTTTTTCTG
* * * *
130060 AATTAATTTC-AAATAATATCTCGAAACATGATTC-GATGGTCGTAAAAACAAATCCTTAAATCC
250 AATTAATTTCGAATTAA-A--TAGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAAACC
* * * * *
130123 AAAGTGGCTGAGAATTGGTCAGATGAAGATAGATAGTTCAAGGAGTCTTTGTGCTAAAAATCATG
312 AAAGTGGCTGAGATTTGGTCAGATGAATATAGATATTTCAAGGAGTCTTCGTGCAAAAAATCATG
* * * * * *
130188 CAAAACTGTGTCGGGACCCCGAAACGCGTTTTTAGCTTAAAATCGTGATGGATAGTGCACGATTT
377 CAAAACT-AGTCGGGGCCTCGAAACGTGTTTTTAGCTTAAAACCGTGATAGATAGTGCACGATTT
* *
130253 CGGCTAAAATTTTTCAAAACTTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCATA
441 CGGCTAAAATTTTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCATA
* ** * *
130318 GACAGTATATAATTTCAAGAGAAAAAGCTTGAAGGGTTTTTCAGGCTTCTAATACCGTTTTTCCA
506 GA-AATATATAATTAAAAGA-AAAAAGCTTGAAGGGTTTTTCAGGCTTTTAATATCGTTTTTCC-
* * * * * *
130383 ATTTTTTCCTGAATTAATTTAGAATTAAAAAGAAACACGATTCATACT-CTCGTAAAAACAAATC
568 ATTTTTTTCTGAATTAATTTTGAATTAAATAGAAACATGATACA-AATGCTCGTAAAAACAAATC
** * * * *
130447 CTTAAATCCAAAGTTCCTGAGATTTGGTTAGATGATTATAGATATTTCAAGGAGTCTTCGTGCTA
632 CTTAAATCCAAAGTGGCTGAGATTTGGTCAGATGAATATAAATATTTCAAGGAGTCTTTGTGC-A
* * * *
130512 AAAATCATGCAAAACTAAGTCGGGGGCTCGAAACGCGATTTTT-GCTT-AAACTCGTGATGGATA
696 AAAATCATGC-AAACTAAGTCGGTGTC-CGAAACGTG-TTTTTAGCTTAAAAC-CGTGATGGAAA
** * * *
130575 GTGCACGATTTCGGCTAAAATTTTGCAAAAATTGATCCGGAAAATTTTTCCTTAATTTTTGGCCA
757 GTATACGATTTCTGCTAAAATTTTGCAAAAATTGATACGGAAAATTTTTCCTCAATTTTTGGCCA
* * ** * * * *
130640 CAATTCTCATAGAAA-ATATATAATTTAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTATAAT
822 CAACTCTCATA-AAATATATATAATTCAAA-CCAAAAAGATCGAAGGGTTTTTCACGCTTCTAAT
* *
130704 ATCGTTTTTCCAATTTTTTTCTGAATTAATTTCGAATCAAAA-CGAAACATAATTCAGATGCTCG
885 ATCGTTTTTCCAA--TTTTTCTGAATTAATTTCAAAT-AAAATCGAAACATGATTCAGATGCTCG
130768 TAAAAACAAATCCTTAAATCCAAAGTGGCTGAG
947 TAAAAACAAATCCTTAAATCCAAAGTGGCTGAG
* * * * *
130801 ATTTGGTTAGATGAATATAGATAGTTCAAGGACTCTTCGTGCTAAAAATCATGCAAAATTGAGTC
1 ATTTGGTCAGATGAATATAGATATTTCAAGGAGTCTTCGTGCCAAAAATCATGCAAAACTGAGTC
* * * * *
130866 GGGGCCTCGAAACGCGATTTTAACTTAAAATCGTGATGGATAGTGCACGATTTCGGCTAAAATTT
66 GGGGCC-CGAAACGCGTTTTTAGC-TAAAA-CGTGATGGAAAGTACACGATTTCTGCTAAAATTT
*
130931 TGCAAAAATTGATCCGGAAAGTTTTTCCTCAATTTTTGGCCACAATTCTCATAGACAATATATAA
128 TGCAAAAATTGATCCGGAAAATTTTTCCTCAA-TTTTGGCCA-AATTCT-AT--A-AATATATAA
* *
130996 TTAAAAG-AAAAAAGCTTGAAGGGTTTTTCAGCCTTCTAATATCGTTTTTCCA--TTTTTT-TGA
187 TTCAAAGAAAAAAAGCTTGAAGGG-TTTTCAGGCTTCTAATATCGTTTTTCCATTTTTTTTCTGA
* * * * * *
131057 ATTAATTTTGAATTAAATAGAAACAGGATACAAATGCTCGTAAAAACAAAACCTTAAATCCAAAG
251 ATTAATTTCGAATTAAATAGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAAACCAAAG
* * * *
131122 TGGCTGAGATTTGGTCAGATGAATATAAATATTTGAAGGAGTCTTTGTGCAAAAAATCATGGAAA
316 TGGCTGAGATTTGGTCAGATGAATATAGATATTTCAAGGAGTCTTCGTGCAAAAAATCATGCAAA
* * * * * ** *
131187 ACTAAGTCGGTGTCC-CGAAAGGTGTTTTTAGCCTAAAACCGTGATGGAAAGTATACGATTTCTG
381 ACT-AGTCGG-GGCCTCGAAACGTGTTTTTAGCTTAAAACCGTGATAGATAGTGCACGATTTCGG
* * * *** *
131251 CTAAAATTTTGTAAAAATTGATCTGGAAAATTTTTCTTCAATTTTTGGCCACAACAATCATAAAA
444 CTAAAATTTTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCATAGAA
* *** * * * * *
131316 TATATATAACTCAAATCCAAAAAGATCGAACGCTTTTTCACGCTTTTAATATCGTTTTTCCAATT
509 -ATATATAA-TTAAAAGAAAAAAGCTTGAAGGGTTTTTCAGGCTTTTAATATCGTTTTTCC-ATT
* * * * * * * *
131381 TTTTT-TGAATTAA-TTTCAAATAATATCGAAACATGATTC-GATGGTCGTAAAATCAAATCATT
571 TTTTTCTGAATTAATTTTGAATTAA-ATAGAAACATGATACAAATGCTCGTAAAAACAAATCCTT
* * * * *
131443 AAATCCAAAGTGGCTGAGATTTGATCAGATGAAGATAGATAGTTCAAGGAGTCTTCGTGCTAAAA
635 AAATCCAAAGTGGCTGAGATTTGGTCAGATGAATATAAATATTTCAAGGAGTCTTTGTGC-AAAA
** * * * * *
131508 ATCATGCAAAACTGGGTC-GTGGCCCCGAAACGCGTTTTTAGTTTAAAATCGTGATGGATAA-TG
699 ATCATGC-AAACTAAGTCGGT-G-TCCGAAACGTGTTTTTAGCTTAAAACCGTGATGGA-AAGTA
* ** * * *
131571 CACGATTTAGGCTAAAATTTTGCAAAAATTGATCCGGAAAATTTTTCTTCAATTTTTGACCACAA
760 TACGATTTCTGCTAAAATTTTGCAAAAATTGATACGGAAAATTTTTCCTCAATTTTTGGCCACAA
* * ** * * * *
131636 TTCTCATAGAAA-ATGTATAATTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTATAATATC
825 CTCTCATA-AAATATATATAATTCAAA-CCAAAAAGATCGAAGGGTTTTTCACGCTTCTAATATC
* ** *
131700 GTTTTTCCAATTTTTTTCTGAATTAATTTCAAATTAAAA-AGAAACACAATTCATATGCTCGT-A
888 GTTTTTCCAA--TTTTTCTGAATTAATTTCAAA-TAAAATCGAAACATGATTCAGATGCTCGTAA
* *
131763 AAATAAATCCTTAAATCCAAAGTGCCTGAG
950 AAACAAATCCTTAAATCCAAAGTGGCTGAG
* * * * *
131793 ATATGGTTAGATGAATATAGATAGTTCAAGGAGTCTTCGTGCTAAATATCATGCAAAACTGAGTC
1 ATTTGGTCAGATGAATATAGATATTTCAAGGAGTCTTCGTGCCAAAAATCATGCAAAACTGAGTC
* * * **
131858 GGGGCCTCGAAACGCGATTTTAGCTTAAAATCGTGATGGATAGTGCACGATTTAAGCTAAAATTT
66 GGGGCC-CGAAACGCGTTTTTAGC-TAAAA-CGTGATGGAAAGTACACGATTTCTGCTAAAATTT
* *
131923 TCCAAAAATTTATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCATAGACAATATATAA
128 TGCAAAAATTGATCCGGAAAATTTTTCCTCAA-TTTTGGCCA-AATTCT-AT--A-AATATATAA
* *
131988 TTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCTAATATCATTTTTCCA-ATTTTTTCTGA
187 TTCAAAGAAAAAAAGCTTGAAGGG-TTTTCAGGCTTCTAATATCGTTTTTCCATTTTTTTTCTGA
* * * *
132052 ATTAATTTCGAATTAAAAAGAAACACGATTCAGATGCTCATAAAAACAAATCCTTAAATCCAAAG
251 ATTAATTTCGAATTAAATAGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAAACCAAAG
* * * * *
132117 TGGCTGAGATTTGGTTAGATAAATATAGATAGTTCAAGGAGTCTTCGTGCTAAATATCATGCAAA
316 TGGCTGAGATTTGGTCAGATGAATATAGATATTTCAAGGAGTCTTCGTGCAAAAAATCATGCAAA
* * * * *
132182 ACTGTGTCGGGGCCTCGAAACGCGATTTTAGCTTAAAATCGTGATGGATAGTGCACGATTTCGGC
381 ACT-AGTCGGGGCCTCGAAACGTGTTTTTAGCTTAAAACCGTGATAGATAGTGCACGATTTCGGC
*
132247 TAAAATTTTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCATAGGCA
445 TAAAATTTTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCATA-GAA
* *
132312 ATATATAATTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCTAATATCGTTTTTCCATTTT
509 ATATATAATTAAAAG-AAAAAAGCTTGAAGGGTTTTTCAGGCTTTTAATATCGTTTTTCCATTTT
* ** *
132377 TTGCTGAATTAATTTTGAATTAAATAGAAACATGATACAAAACCTCGTAAAAACAAAACCTTAAA
573 TTTCTGAATTAATTTTGAATTAAATAGAAACATGATACAAATGCTCGTAAAAACAAATCCTTAAA
132442 TCCAAAGTGGCTGAGATTTGGTCAGATGAATATAAATATTTCAAGGAGTCTTTGT
638 TCCAAAGTGGCTGAGATTTGGTCAGATGAATATAAATATTTCAAGGAGTCTTTGT
Statistics
Matches: 6478, Mismatches: 922, Indels: 788
0.79 0.11 0.10
Matches are distributed among these distances:
959 3 0.00
960 1 0.00
961 130 0.02
962 38 0.01
963 78 0.01
964 130 0.02
965 62 0.01
966 24 0.00
967 1 0.00
969 2 0.00
970 151 0.02
971 31 0.00
972 31 0.00
973 3 0.00
974 3 0.00
975 4 0.00
976 3 0.00
977 1 0.00
978 4 0.00
979 4 0.00
980 1 0.00
981 3 0.00
982 10 0.00
983 1 0.00
985 4 0.00
986 1 0.00
987 9 0.00
988 14 0.00
989 199 0.03
990 657 0.10
991 37 0.01
992 255 0.04
993 504 0.08
994 486 0.08
995 689 0.11
996 641 0.10
997 159 0.02
998 160 0.02
999 81 0.01
1000 7 0.00
1001 1 0.00
1002 5 0.00
1004 3 0.00
1006 68 0.01
1007 16 0.00
1008 5 0.00
1009 9 0.00
1010 5 0.00
1011 2 0.00
1012 9 0.00
1013 5 0.00
1014 2 0.00
1016 4 0.00
1017 1 0.00
1018 7 0.00
1019 15 0.00
1021 16 0.00
1022 3 0.00
1023 3 0.00
1024 51 0.01
1025 3 0.00
1026 17 0.00
1027 282 0.04
1028 211 0.03
1029 104 0.02
1030 9 0.00
1031 10 0.00
1032 4 0.00
1033 4 0.00
1034 4 0.00
1035 15 0.00
1036 2 0.00
1037 1 0.00
1038 6 0.00
1039 2 0.00
1040 11 0.00
1041 10 0.00
1042 1 0.00
1043 8 0.00
1044 47 0.01
1045 305 0.05
1046 42 0.01
1047 7 0.00
1048 6 0.00
1049 4 0.00
1050 20 0.00
1051 5 0.00
1052 8 0.00
1053 21 0.00
1054 269 0.04
1055 152 0.02
1056 1 0.00
1057 17 0.00
1058 83 0.01
1059 8 0.00
1060 2 0.00
1061 4 0.00
1062 3 0.00
1063 1 0.00
1064 2 0.00
1065 2 0.00
1066 2 0.00
1067 4 0.00
1068 5 0.00
1069 16 0.00
1071 2 0.00
1072 2 0.00
1074 2 0.00
1075 4 0.00
1076 5 0.00
1078 1 0.00
1082 7 0.00
1083 3 0.00
1084 2 0.00
1085 3 0.00
1086 3 0.00
1090 6 0.00
1091 5 0.00
1092 5 0.00
1093 3 0.00
1094 4 0.00
1095 13 0.00
1096 6 0.00
1097 1 0.00
1098 41 0.01
1099 3 0.00
1100 5 0.00
1101 4 0.00
1103 2 0.00
1104 3 0.00
1105 1 0.00
1106 5 0.00
1107 26 0.00
1108 23 0.00
1109 332 0.05
1110 7 0.00
1111 4 0.00
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.33
Consensus pattern (979 bp):
ATTTGGTCAGATGAATATAGATATTTCAAGGAGTCTTCGTGCCAAAAATCATGCAAAACTGAGTC
GGGGCCCGAAACGCGTTTTTAGCTAAAACGTGATGGAAAGTACACGATTTCTGCTAAAATTTTGC
AAAAATTGATCCGGAAAATTTTTCCTCAATTTTGGCCAAATTCTATAAATATATAATTCAAAGAA
AAAAAGCTTGAAGGGTTTTCAGGCTTCTAATATCGTTTTTCCATTTTTTTTCTGAATTAATTTCG
AATTAAATAGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAAACCAAAGTGGCTGAGAT
TTGGTCAGATGAATATAGATATTTCAAGGAGTCTTCGTGCAAAAAATCATGCAAAACTAGTCGGG
GCCTCGAAACGTGTTTTTAGCTTAAAACCGTGATAGATAGTGCACGATTTCGGCTAAAATTTTGC
AAAAATTGATCCGGAAAATTTTTCCTCAATTTTTGGCCACAATTCTCATAGAAATATATAATTAA
AAGAAAAAAGCTTGAAGGGTTTTTCAGGCTTTTAATATCGTTTTTCCATTTTTTTCTGAATTAAT
TTTGAATTAAATAGAAACATGATACAAATGCTCGTAAAAACAAATCCTTAAATCCAAAGTGGCTG
AGATTTGGTCAGATGAATATAAATATTTCAAGGAGTCTTTGTGCAAAAATCATGCAAACTAAGTC
GGTGTCCGAAACGTGTTTTTAGCTTAAAACCGTGATGGAAAGTATACGATTTCTGCTAAAATTTT
GCAAAAATTGATACGGAAAATTTTTCCTCAATTTTTGGCCACAACTCTCATAAAATATATATAAT
TCAAACCAAAAAGATCGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCAATTTTTCTGAATTA
ATTTCAAATAAAATCGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAAAGTGGC
TGAG
Found at i:126667 original size:52 final size:52
Alignment explanation
Indices: 126589--126696 Score: 189
Period size: 52 Copynumber: 2.1 Consensus size: 52
126579 TTTTTCTGAA
126589 TTAATTTTGAATTAAATAGAAACATGATACAAATGCTCGTAAAAACAAAACC
1 TTAATTTTGAATTAAATAGAAACATGATACAAATGCTCGTAAAAACAAAACC
* * *
126641 TTAATTTTGAATTAAATAGAAGCATGATACAAATGCTCGTAAACACAAAACT
1 TTAATTTTGAATTAAATAGAAACATGATACAAATGCTCGTAAAAACAAAACC
126693 TTAA
1 TTAA
126697 ATCCAAAGTG
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.48, C:0.13, G:0.10, T:0.29
Consensus pattern (52 bp):
TTAATTTTGAATTAAATAGAAACATGATACAAATGCTCGTAAAAACAAAACC
Found at i:129383 original size:332 final size:332
Alignment explanation
Indices: 128253--132493 Score: 5996
Period size: 332 Copynumber: 12.8 Consensus size: 332
128243 TATTAAAATA
*
128253 GATAGTGCACGATTTCGGCTAAAAATTTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTG
1 GATAGTGCACGATTTCGGCTAAAATTTTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTG
128318 GCCACAATTCTCATAGACAATATATAATTCAAAG-AAAAAAGCTTGAAGGGTTTTTCAGGCTTCT
66 GCCACAATTCTCATAGACAATATATAATTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCT
* *
128382 AATATCGTTTTTCCAATTTTTTGCTGAATTAATTTCGAATTAAATAGAAACACGATTCAGATGCT
131 AATATCGTTTTTCC-ATTTTTTTCTGAATTAATTTCGAATTAAAAAGAAACACGATTCAGATGCT
* *
128447 CGTAAAAACAAATCCTTAAATCCAAAGTGGCTGAGATTTGGTCAGATGAATATAAATATTTCAAG
195 CGTAAAAACAAATCCTTAAATCCAAAGTGGCTGAGATTTGGTCAGATGAATATAGATAGTTCAAG
* * * * * *
128512 GAGTCTTTGTGCAAAAAATCATGCAAAACTAAGTCGGTGTCC-CGAAACGTGTGTTTAGCCTAAA
260 GAGTCTTCGTGCTAAAAATCATGCAAAACTAAGTCGG-GGCCTCGAAACGCGTTTTTAGCTTAAA
*
128576 ACCGTGATG
324 ATCGTGATG
* ** *
128585 GAAAGTATACGATTTCTGCTAAAATTTTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTG
1 GATAGTGCACGATTTCGGCTAAAATTTTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTG
* * * *** * * * *
128650 GCCACAACTCTCATA-AAATATATATAACTCAAATCCAAAAAGATCGAAGGGTTTTTCACGCTTT
66 GCCACAATTCTCATAGACA-ATATATAATTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTC
* * ** * *
128714 TAATATCGTTTTTCCAATTTTTTCTGAATTAATTTC-AAATAATATCGAAACATGATTC-GATGG
130 TAATATCGTTTTTCCATTTTTTTCTGAATTAATTTCGAATTAA-AAAGAAACACGATTCAGATGC
* *
128777 TCGTAAAAACAAATCCTTAAATCCAAAGTGGCTGAGATTTGGTCAGATGAAGATAGGTAGTTCAA
194 TCGTAAAAACAAATCCTTAAATCCAAAGTGGCTGAGATTTGGTCAGATGAATATAGATAGTTCAA
* ** * *
128842 GGAGTCTTCGTACTAAAAATCATGCAAAACTGTGTTGGGGCCTCGAAACGCGATTTTAGCTTAAA
259 GGAGTCTTCGTGCTAAAAATCATGCAAAACTAAGTCGGGGCCTCGAAACGCGTTTTTAGCTTAAA
128907 ATCGTGATG
324 ATCGTGATG
128916 GATAGTGCACGATTTCGGCTAAAATTTTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTG
1 GATAGTGCACGATTTCGGCTAAAATTTTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTG
128981 GCCACAATTCTCATAGACAATATATAATTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCT
66 GCCACAATTCTCATAGACAATATATAATTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCT
* * *
129046 AATATCGTTTTTGCATTTTTTTCTAAATTAATTTCGAATTAAAAAGAAACACGATTCAAATGCTC
131 AATATCGTTTTTCCATTTTTTTCTGAATTAATTTCGAATTAAAAAGAAACACGATTCAGATGCTC
** * * *
129111 GTAAAAACAAATCCTTAAATTGAAAGTGGCTGAGAATTGGTCAAATGATTATAGATAGTTCAAGG
196 GTAAAAACAAATCCTTAAATCCAAAGTGGCTGAGATTTGGTCAGATGAATATAGATAGTTCAAGG
* * *
129176 AGTATTCGTGCTAAAAACCATGCAAAACTAAGTCGGGGGCTCGAAACGCGTTTTTAGCTTAAAAT
261 AGTCTTCGTGCTAAAAATCATGCAAAACTAAGTCGGGGCCTCGAAACGCGTTTTTAGCTTAAAAT
129241 CGTGATG
326 CGTGATG
129248 GATAGTGCACGATTTCGGCTAAAATTTTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTG
1 GATAGTGCACGATTTCGGCTAAAATTTTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTG
129313 GCCACAATTCTCATAGACAATATATAATTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCT
66 GCCACAATTCTCATAGACAATATATAATTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCT
*
129378 AATATCGTTTTTCCAATTTTATTT-TGAATTAATTTCGAATTAAAAAGAAACATGATTCAGATGC
131 AATATCGTTTTTCC-ATTTT-TTTCTGAATTAATTTCGAATTAAAAAGAAACACGATTCAGATGC
* * *
129442 TCGTAAAAACAAATCCTTAAATCCAAAGTGGCTGAGATTTAGTCAGATGAAGATAGGTAGTTCAA
194 TCGTAAAAACAAATCCTTAAATCCAAAGTGGCTGAGATTTGGTCAGATGAATATAGATAGTTCAA
129507 GGAGTCTTCGTGCTAAAAATCATGCAAAACTAAGTCGGGG-CTCCGAAACGCGTTTTTAGCTTAA
259 GGAGTCTTCGTGCTAAAAATCATGCAAAACTAAGTCGGGGCCT-CGAAACGCGTTTTTAGCTTAA
129571 AATCGTGATG
323 AATCGTGATG
*
129581 GATAGTGCACGATTTCGGCTAAAATTTTGCAAAAATTGATCCGGAAAATTATTCCTCAATTTTTG
1 GATAGTGCACGATTTCGGCTAAAATTTTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTG
*
129646 GCCACAATTCTCATAGACAATATATAATTTC-AAGAAAAAAAATCTTGAAGGGTTTTTCAGGCTT
66 GCCACAATTCTCATAGACAATATATAA-TTCAAAG-AAAAAAAGCTTGAAGGGTTTTTCAGGCTT
* *
129710 CTAATATCATTTTTCCAATTTTTTCTGAATTAATTTCGAATTAAAATA-AAACACGATTCAGATG
129 CTAATATCGTTTTTCCATTTTTTTCTGAATTAATTTCGAATTAAAA-AGAAACACGATTCAGATG
* * * * *
129774 CTCGTAAAAACAAATCCTTAAATCCAAAGTGCCTGAGATTTGGTCAGAAGAATATAAATATTTTA
193 CTCGTAAAAACAAATCCTTAAATCCAAAGTGGCTGAGATTTGGTCAGATGAATATAGATAGTTCA
* * * * * *
129839 AGGAGTCTTTGTGCAAAAAATCATGCAAAACTAAGTCGGTGTCC-CGAAACGTGTTTTTTTGCCT
258 AGGAGTCTTCGTGCTAAAAATCATGCAAAACTAAGTCGG-GGCCTCGAAACGCG-TTTTTAGCTT
129903 AAAATC------
321 AAAATCGTGATG
* ** *
129909 G-TA-T--ACGATTTCTGCTAAAATTTTGCAAAAATTGATCATGAAGATTTTTCCTCAATTTTTG
1 GATAGTGCACGATTTCGGCTAAAATTTTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTG
* * * * *** * * * *
129970 GCTACAACTCTCATA-AAATATATATAACTCAAATCCAAAAAGATCGAAGGGTTTTTCACGCTTT
66 GCCACAATTCTCATAGACA-ATATATAATTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTC
* * ** *
130034 TAATATCGTTTTTCCAATTTTTTCTGAATTAATTTC-AAATAATATCTCGAAACATGATTC-GAT
130 TAATATCGTTTTTCCATTTTTTTCTGAATTAATTTCGAATTAA-A--AAGAAACACGATTCAGAT
* * *
130097 GGTCGTAAAAACAAATCCTTAAATCCAAAGTGGCTGAGAATTGGTCAGATGAAGATAGATAGTTC
192 GCTCGTAAAAACAAATCCTTAAATCCAAAGTGGCTGAGATTTGGTCAGATGAATATAGATAGTTC
* ** * *
130162 AAGGAGTCTTTGTGCTAAAAATCATGCAAAACTGTGTCGGGACCCCGAAACGCGTTTTTAGCTTA
257 AAGGAGTCTTCGTGCTAAAAATCATGCAAAACTAAGTCGGGGCCTCGAAACGCGTTTTTAGCTTA
130227 AAATCGTGATG
322 AAATCGTGATG
* *
130238 GATAGTGCACGATTTCGGCTAAAATTTTTCAAAACTTGATCCGGAAAATTTTTCCTCAATTTTTG
1 GATAGTGCACGATTTCGGCTAAAATTTTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTG
* *
130303 GCCACAATTCTCATAGACAGTATATAATTTC-AAGAGAAAAAGCTTGAAGGGTTTTTCAGGCTTC
66 GCCACAATTCTCATAGACAATATATAA-TTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTC
* * * *
130367 TAATACCGTTTTTCCAATTTTTTCCTGAATTAATTTAGAATTAAAAAGAAACACGATTCATACT-
130 TAATATCGTTTTTCC-ATTTTTTTCTGAATTAATTTCGAATTAAAAAGAAACACGATTCAGA-TG
** * * *
130431 CTCGTAAAAACAAATCCTTAAATCCAAAGTTCCTGAGATTTGGTTAGATGATTATAGATATTTCA
193 CTCGTAAAAACAAATCCTTAAATCCAAAGTGGCTGAGATTTGGTCAGATGAATATAGATAGTTCA
*
130496 AGGAGTCTTCGTGCTAAAAATCATGCAAAACTAAGTCGGGGGCTCGAAACGCGATTTTT-GCTTA
258 AGGAGTCTTCGTGCTAAAAATCATGCAAAACTAAGTCGGGGCCTCGAAACGCG-TTTTTAGCTTA
*
130560 AACTCGTGATG
322 AAATCGTGATG
*
130571 GATAGTGCACGATTTCGGCTAAAATTTTGCAAAAATTGATCCGGAAAATTTTTCCTTAATTTTTG
1 GATAGTGCACGATTTCGGCTAAAATTTTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTG
* * *
130636 GCCACAATTCTCATAGAAAATATATAATTTAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTAT
66 GCCACAATTCTCATAGACAATATATAATTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCT
* * **
130701 AATATCGTTTTTCCAATTTTTTTCTGAATTAATTTCGAATCAAAACGAAACATAATTCAGATGCT
131 AATATCGTTTTTCC-ATTTTTTTCTGAATTAATTTCGAATTAAAAAGAAACACGATTCAGATGCT
*
130766 CGTAAAAACAAATCCTTAAATCCAAAGTGGCTGAGATTTGGTTAGATGAATATAGATAGTTCAAG
195 CGTAAAAACAAATCCTTAAATCCAAAGTGGCTGAGATTTGGTCAGATGAATATAGATAGTTCAAG
* * * * *
130831 GACTCTTCGTGCTAAAAATCATGCAAAATTGAGTCGGGGCCTCGAAACGCGATTTTAACTTAAAA
260 GAGTCTTCGTGCTAAAAATCATGCAAAACTAAGTCGGGGCCTCGAAACGCGTTTTTAGCTTAAAA
130896 TCGTGATG
325 TCGTGATG
*
130904 GATAGTGCACGATTTCGGCTAAAATTTTGCAAAAATTGATCCGGAAAGTTTTTCCTCAATTTTTG
1 GATAGTGCACGATTTCGGCTAAAATTTTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTG
* *
130969 GCCACAATTCTCATAGACAATATATAATTAAAAG-AAAAAAGCTTGAAGGGTTTTTCAGCCTTCT
66 GCCACAATTCTCATAGACAATATATAATTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCT
* * * * *
131033 AATATCGTTTTTCCA-TTTTTT-TGAATTAATTTTGAATTAAATAGAAACAGGATACAAATGCTC
131 AATATCGTTTTTCCATTTTTTTCTGAATTAATTTCGAATTAAAAAGAAACACGATTCAGATGCTC
* * * *
131096 GTAAAAACAAAACCTTAAATCCAAAGTGGCTGAGATTTGGTCAGATGAATATAAATATTTGAAGG
196 GTAAAAACAAATCCTTAAATCCAAAGTGGCTGAGATTTGGTCAGATGAATATAGATAGTTCAAGG
* * * * * * *
131161 AGTCTTTGTGCAAAAAATCATGGAAAACTAAGTCGGTGTCC-CGAAAGGTGTTTTTAGCCTAAAA
261 AGTCTTCGTGCTAAAAATCATGCAAAACTAAGTCGG-GGCCTCGAAACGCGTTTTTAGCTTAAAA
*
131225 CCGTGATG
325 TCGTGATG
* ** * * * *
131233 GAAAGTATACGATTTCTGCTAAAATTTTGTAAAAATTGATCTGGAAAATTTTTCTTCAATTTTTG
1 GATAGTGCACGATTTCGGCTAAAATTTTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTG
*** * * *** * * * * * *
131298 GCCACAACAATCATA-AAATATATATAACTCAAATCCAAAAAGATCGAACGCTTTTTCACGCTTT
66 GCCACAATTCTCATAGACA-ATATATAATTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTC
* ** *
131362 TAATATCGTTTTTCCAATTTTTTT-TGAATTAATTTC-AAATAATATCGAAACATGATTC-GATG
130 TAATATCGTTTTTCC-ATTTTTTTCTGAATTAATTTCGAATTAA-AAAGAAACACGATTCAGATG
* * * * *
131424 GTCGTAAAATCAAATCATTAAATCCAAAGTGGCTGAGATTTGATCAGATGAAGATAGATAGTTCA
193 CTCGTAAAAACAAATCCTTAAATCCAAAGTGGCTGAGATTTGGTCAGATGAATATAGATAGTTCA
** * * *
131489 AGGAGTCTTCGTGCTAAAAATCATGCAAAACTGGGTCGTGGCCCCGAAACGCGTTTTTAGTTTAA
258 AGGAGTCTTCGTGCTAAAAATCATGCAAAACTAAGTCGGGGCCTCGAAACGCGTTTTTAGCTTAA
131554 AATCGTGATG
323 AATCGTGATG
* * *
131564 GATAATGCACGATTTAGGCTAAAATTTTGCAAAAATTGATCCGGAAAATTTTTCTTCAATTTTTG
1 GATAGTGCACGATTTCGGCTAAAATTTTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTG
* * * *
131629 ACCACAATTCTCATAGAAAATGTATAATTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTAT
66 GCCACAATTCTCATAGACAATATATAATTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCT
* * *
131694 AATATCGTTTTTCCAATTTTTTTCTGAATTAATTTCAAATTAAAAAGAAACACAATTCATATGCT
131 AATATCGTTTTTCC-ATTTTTTTCTGAATTAATTTCGAATTAAAAAGAAACACGATTCAGATGCT
* * * *
131759 CGT-AAAATAAATCCTTAAATCCAAAGTGCCTGAGATATGGTTAGATGAATATAGATAGTTCAAG
195 CGTAAAAACAAATCCTTAAATCCAAAGTGGCTGAGATTTGGTCAGATGAATATAGATAGTTCAAG
* * *
131823 GAGTCTTCGTGCTAAATATCATGCAAAACTGAGTCGGGGCCTCGAAACGCGATTTTAGCTTAAAA
260 GAGTCTTCGTGCTAAAAATCATGCAAAACTAAGTCGGGGCCTCGAAACGCGTTTTTAGCTTAAAA
131888 TCGTGATG
325 TCGTGATG
** * *
131896 GATAGTGCACGATTTAAGCTAAAATTTTCCAAAAATTTATCCGGAAAATTTTTCCTCAATTTTTG
1 GATAGTGCACGATTTCGGCTAAAATTTTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTG
131961 GCCACAATTCTCATAGACAATATATAATTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCT
66 GCCACAATTCTCATAGACAATATATAATTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCT
* *
132026 AATATCATTTTTCCAATTTTTTCTGAATTAATTTCGAATTAAAAAGAAACACGATTCAGATGCTC
131 AATATCGTTTTTCCATTTTTTTCTGAATTAATTTCGAATTAAAAAGAAACACGATTCAGATGCTC
* * *
132091 ATAAAAACAAATCCTTAAATCCAAAGTGGCTGAGATTTGGTTAGATAAATATAGATAGTTCAAGG
196 GTAAAAACAAATCCTTAAATCCAAAGTGGCTGAGATTTGGTCAGATGAATATAGATAGTTCAAGG
* ** *
132156 AGTCTTCGTGCTAAATATCATGCAAAACTGTGTCGGGGCCTCGAAACGCGATTTTAGCTTAAAAT
261 AGTCTTCGTGCTAAAAATCATGCAAAACTAAGTCGGGGCCTCGAAACGCGTTTTTAGCTTAAAAT
132221 CGTGATG
326 CGTGATG
132228 GATAGTGCACGATTTCGGCTAAAATTTTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTG
1 GATAGTGCACGATTTCGGCTAAAATTTTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTG
*
132293 GCCACAATTCTCATAGGCAATATATAATTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCT
66 GCCACAATTCTCATAGACAATATATAATTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCT
* * * * * * **
132358 AATATCGTTTTTCCATTTTTTGCTGAATTAATTTTGAATTAAATAGAAACATGATACAAAACCTC
131 AATATCGTTTTTCCATTTTTTTCTGAATTAATTTCGAATTAAAAAGAAACACGATTCAGATGCTC
* * *
132423 GTAAAAACAAAACCTTAAATCCAAAGTGGCTGAGATTTGGTCAGATGAATATAAATATTTCAAGG
196 GTAAAAACAAATCCTTAAATCCAAAGTGGCTGAGATTTGGTCAGATGAATATAGATAGTTCAAGG
132488 AGTCTT
261 AGTCTT
132494 TGT
Statistics
Matches: 3473, Mismatches: 380, Indels: 112
0.88 0.10 0.03
Matches are distributed among these distances:
322 5 0.00
323 80 0.02
324 180 0.05
325 10 0.00
326 1 0.00
327 2 0.00
328 3 0.00
329 231 0.07
330 53 0.02
331 587 0.17
332 1144 0.33
333 1077 0.31
334 94 0.03
335 6 0.00
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.33
Consensus pattern (332 bp):
GATAGTGCACGATTTCGGCTAAAATTTTGCAAAAATTGATCCGGAAAATTTTTCCTCAATTTTTG
GCCACAATTCTCATAGACAATATATAATTCAAAGAAAAAAAGCTTGAAGGGTTTTTCAGGCTTCT
AATATCGTTTTTCCATTTTTTTCTGAATTAATTTCGAATTAAAAAGAAACACGATTCAGATGCTC
GTAAAAACAAATCCTTAAATCCAAAGTGGCTGAGATTTGGTCAGATGAATATAGATAGTTCAAGG
AGTCTTCGTGCTAAAAATCATGCAAAACTAAGTCGGGGCCTCGAAACGCGTTTTTAGCTTAAAAT
CGTGATG
Done.