Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014586.1 Corchorus olitorius cultivar O-4 contig14619, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70098

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2404--9205
333
20.7
329
80
7
3110
33
14
16
34
1.89
3206--9205
988
6.1
986
84
5
6579
33
14
16
34
1.90
5407--9207
333
11.4
333
85
3
4744
34
14
16
35
1.89
5407--9207
667
5.7
667
84
3
4787
34
14
16
35
1.89
11498--11554
30
1.9
29
82
3
69
29
7
3
59
1.40
12063--12111
15
3.3
15
85
5
55
34
12
18
34
1.88
12174--12216
15
2.8
16
78
7
52
25
13
30
30
1.94
14750--14839
16
5.7
16
70
11
69
18
8
34
37
1.82
14752--14851
32
3.2
32
86
1
139
17
10
35
38
1.83
15053--15098
16
2.8
17
87
9
69
15
10
17
56
1.67
33222--33277
27
2.1
27
93
0
94
32
25
5
37
1.78
37692--37750
19
3.0
20
85
7
84
28
20
11
38
1.88
40022--40049
7
4.0
7
100
0
56
42
28
14
14
1.84
48104--48158
19
2.8
20
78
8
60
38
9
20
32
1.84

Tables:   1

The End!