Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014587.1 Corchorus olitorius cultivar O-4 contig14620, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39848

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1198--1239
19
2.3
19
91
4
68
26
7
0
66
1.17
5710--5792
22
3.8
21
76
17
73
59
1
1
38
1.13
10549--10603
8
6.1
9
78
17
53
47
0
12
40
1.42
11581--11605
8
3.1
8
100
0
50
0
60
0
40
0.97
13411--13498
6
14.7
6
95
0
131
18
21
31
28
1.97
25020--25081
30
2.1
30
90
0
97
45
4
22
27
1.73
25474--25613
67
2.1
68
97
2
264
37
12
21
27
1.90
29231--29255
3
8.3
3
100
0
50
68
0
0
32
0.90
32399--32430
2
16.0
2
100
0
64
50
0
0
50
1.00
36464--36491
2
14.0
2
100
0
56
50
0
0
50
1.00
39160--39203
2
23.0
2
81
9
56
52
2
0
45
1.13

Tables:   1

The End!