Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01014588.1 Corchorus olitorius cultivar O-4 contig14621, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97807
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Found at i:807 original size:14 final size:13
Alignment explanation
Indices: 788--826 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
778 AGTTAACACT
788 AACTGACTCGAAAA
1 AACTGACTC-AAAA
*
802 AACTGACTCAACA
1 AACTGACTCAAAA
815 AACTGACT-AAAA
1 AACTGACTCAAAA
827 CCCGACAGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
12 3 0.13
13 11 0.48
14 9 0.39
ACGTcount: A:0.51, C:0.23, G:0.10, T:0.15
Consensus pattern (13 bp):
AACTGACTCAAAA
Found at i:819 original size:13 final size:14
Alignment explanation
Indices: 788--822 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
778 AGTTAACACT
788 AACTGACTCGAAAA
1 AACTGACTCGAAAA
*
802 AACTGACTC-AACA
1 AACTGACTCGAAAA
815 AACTGACT
1 AACTGACT
823 AAAACCCGAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 11 0.55
14 9 0.45
ACGTcount: A:0.46, C:0.26, G:0.11, T:0.17
Consensus pattern (14 bp):
AACTGACTCGAAAA
Found at i:7135 original size:23 final size:23
Alignment explanation
Indices: 7109--7154 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
7099 TTGCATAATT
7109 TTCCATTATTGAAAAGAAAAATA
1 TTCCATTATTGAAAAGAAAAATA
7132 TTCCATTATTGAAAAGAAAAATA
1 TTCCATTATTGAAAAGAAAAATA
7155 GTGATAAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.52, C:0.09, G:0.09, T:0.30
Consensus pattern (23 bp):
TTCCATTATTGAAAAGAAAAATA
Found at i:16855 original size:129 final size:129
Alignment explanation
Indices: 16618--16898 Score: 359
Period size: 129 Copynumber: 2.2 Consensus size: 129
16608 TGAGCCCATT
* * *
16618 TCACTACTATGAGGCTCACCATCTTGCTTTATACTCTGCTTAAGTATAGTAGAAGATTCCTCAGC
1 TCACTACTATGTGGCTCACCATCTTGCTTCATACTCTGCTTAAGTATAGTAGAAGATACCTCAGC
** * * * * * *
16683 AATGTCTTTCCTAACATCAAACTTGAGTGACTGGTTCTTTTCCTCTGATTCATCTTTCTTTGAC
66 AATGTCTCCCCCAACATCAAACTTGAGTAACTGGTTCTCTTCCTCTGAATCATCTTTCTCTGAA
* * * * * *
16747 TCAGTACTATGTGGCTCACCATCTTGCTTCATGCTCTGCTTCAGTCCT-GTAGAAGATACTTCTG
1 TCACTACTATGTGGCTCACCATCTTGCTTCATACTCTGCTTAAGT-ATAGTAGAAGATACCTCAG
* *
16811 CAATGTC-CCCGCCAACGTCAAACTTGGGTAACTGGTTCTCTTCCTCTGAATCATCTTTCTCTGA
65 CAATGTCTCCC-CCAACATCAAACTTGAGTAACTGGTTCTCTTCCTCTGAATCATCTTTCTCTGA
16875 A
129 A
16876 TCACTACTATGTGGCTCACCATC
1 TCACTACTATGTGGCTCACCATC
16899 CTCTGAACTG
Statistics
Matches: 130, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
128 1 0.01
129 128 0.98
130 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.15, T:0.36
Consensus pattern (129 bp):
TCACTACTATGTGGCTCACCATCTTGCTTCATACTCTGCTTAAGTATAGTAGAAGATACCTCAGC
AATGTCTCCCCCAACATCAAACTTGAGTAACTGGTTCTCTTCCTCTGAATCATCTTTCTCTGAA
Found at i:16872 original size:15 final size:15
Alignment explanation
Indices: 16849--16878 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
16839 TAACTGGTTC
16849 TCTTCCTCTGAATCA
1 TCTTCCTCTGAATCA
*
16864 TCTTTCTCTGAATCA
1 TCTTCCTCTGAATCA
16879 CTACTATGTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.30, G:0.07, T:0.43
Consensus pattern (15 bp):
TCTTCCTCTGAATCA
Found at i:17001 original size:96 final size:93
Alignment explanation
Indices: 16839--17067 Score: 361
Period size: 96 Copynumber: 2.4 Consensus size: 93
16829 CAAACTTGGG
* *
16839 TAACTGGTTCTCTTCCTCTGAATCATCTTTCTCTGAATCACTACTATGTGGCTCACCATCCTCTG
1 TAACTGGTTCTCTTCCTCTGATTCATCTTTCTCTGACTCACTACTATGTGGCTCACCATCCTCTG
16904 AACTGTCCCCGCTCACATCACGA-TTGAA
66 AACTGTCCCCGCTCACATCA-GACTTGAA
*
16932 TAACTGGTTCTCTTCCTCTGATTCATCCTCCTTCTCTGACTCGCTACTATGTGGCTCACCATCCT
1 TAACTGGTTCTCTTCCTCTGATTCAT-CT--TTCTCTGACTCACTACTATGTGGCTCACCATCCT
*
16997 CTGAACTGTCCCCGCTCACATCAGACTTGAC
63 CTGAACTGTCCCCGCTCACATCAGACTTGAA
* *
17028 TGATTGGTTCTCTTCCTCTGATTCATCTTTCTCTGACTCA
1 TAACTGGTTCTCTTCCTCTGATTCATCTTTCTCTGACTCA
17068 TCAGAGCTAG
Statistics
Matches: 125, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
93 36 0.29
94 2 0.02
95 4 0.03
96 83 0.66
ACGTcount: A:0.18, C:0.33, G:0.13, T:0.36
Consensus pattern (93 bp):
TAACTGGTTCTCTTCCTCTGATTCATCTTTCTCTGACTCACTACTATGTGGCTCACCATCCTCTG
AACTGTCCCCGCTCACATCAGACTTGAA
Found at i:20629 original size:19 final size:20
Alignment explanation
Indices: 20584--20647 Score: 76
Period size: 21 Copynumber: 3.1 Consensus size: 20
20574 GCTGCTCTAA
20584 TAATCTCATATGTACAGTACC
1 TAATCTCATATGTACAGTA-C
* *
20605 TAATCTAATATGTACAGT-G
1 TAATCTCATATGTACAGTAC
*
20624 TAATCTCATCTGTACAGTTAC
1 TAATCTCATATGTACAG-TAC
20645 TAA
1 TAA
20648 ACAGTGTCAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
19 15 0.42
20 1 0.03
21 20 0.56
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36
Consensus pattern (20 bp):
TAATCTCATATGTACAGTAC
Found at i:32750 original size:8 final size:8
Alignment explanation
Indices: 32737--32761 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
32727 CAATCCGATT
32737 TCATTGGC
1 TCATTGGC
32745 TCATTGGC
1 TCATTGGC
32753 TCATTGGC
1 TCATTGGC
32761 T
1 T
32762 GGCATTCTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.24, G:0.24, T:0.40
Consensus pattern (8 bp):
TCATTGGC
Found at i:36447 original size:31 final size:31
Alignment explanation
Indices: 36407--36465 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
36397 TACAAGAAGG
*
36407 ACTTAATTGA-CCTAATCTTGTGAGTATAAGA
1 ACTTAATTGATCC-AATATTGTGAGTATAAGA
*
36438 ACTTCATTGATCCAATATTGTGAGTATA
1 ACTTAATTGATCCAATATTGTGAGTATA
36466 TTAATTAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
31 23 0.92
32 2 0.08
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.37
Consensus pattern (31 bp):
ACTTAATTGATCCAATATTGTGAGTATAAGA
Found at i:37732 original size:11 final size:11
Alignment explanation
Indices: 37689--37726 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
37679 TTTCTATATA
*
37689 AAATAAATTAT
1 AAATTAATTAT
37700 CAAA-TAATTAT
1 -AAATTAATTAT
37711 AAATTAATTAT
1 AAATTAATTAT
37722 AAATT
1 AAATT
37727 TTTTATGAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
10 3 0.12
11 18 0.75
12 3 0.12
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (11 bp):
AAATTAATTAT
Found at i:40775 original size:24 final size:24
Alignment explanation
Indices: 40743--40921 Score: 261
Period size: 24 Copynumber: 7.5 Consensus size: 24
40733 TCAACTCAGT
40743 CTGCCTTTGGTGCCACAAGCACCC
1 CTGCCTTTGGTGCCACAAGCACCC
*
40767 CTGCTTTTGGTAG-CACAAGCACCC
1 CTGCCTTTGGT-GCCACAAGCACCC
*
40791 CCGCCTTTGGTGCCACAAGCACCC
1 CTGCCTTTGGTGCCACAAGCACCC
*
40815 CTGCCTTTGGTGCCACGAGCACCC
1 CTGCCTTTGGTGCCACAAGCACCC
*
40839 CTGCCTTTGGTTCCACAAGCACCC
1 CTGCCTTTGGTGCCACAAGCACCC
* * *
40863 CTGGCTTTGGTGCCACGAGCACTC
1 CTGCCTTTGGTGCCACAAGCACCC
* *
40887 CTGCCTTTGGTGCTACAAGCACTC
1 CTGCCTTTGGTGCCACAAGCACCC
40911 CTGCCTTTGGT
1 CTGCCTTTGGT
40922 TCAACTGGAA
Statistics
Matches: 139, Mismatches: 14, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
23 1 0.01
24 137 0.99
25 1 0.01
ACGTcount: A:0.15, C:0.38, G:0.22, T:0.25
Consensus pattern (24 bp):
CTGCCTTTGGTGCCACAAGCACCC
Found at i:41031 original size:24 final size:23
Alignment explanation
Indices: 40999--41103 Score: 90
Period size: 24 Copynumber: 4.5 Consensus size: 23
40989 GAACAGGAAG
*
40999 TGCTTTTGGAGCATCAAGCACACC
1 TGCTTTTGGAGCTTCAAGCAC-CC
* * *
41023 TGCTTTTGGCGCTTCCAGCTCTCC
1 TGCTTTTGGAGCTTCAAGCAC-CC
*
41047 TGCTTTTGG-GACTTCAA-C-CTC
1 TGCTTTTGGAG-CTTCAAGCACCC
* *
41068 TGCTTTTGGTGCTTCAAGTACCCC
1 TGCTTTTGGAGCTTCAAGCA-CCC
41092 TGCTTTTGGAGC
1 TGCTTTTGGAGC
41104 ATCTTCTGCC
Statistics
Matches: 66, Mismatches: 10, Indels: 10
0.77 0.12 0.12
Matches are distributed among these distances:
21 16 0.24
22 2 0.03
23 2 0.03
24 46 0.70
ACGTcount: A:0.13, C:0.30, G:0.22, T:0.35
Consensus pattern (23 bp):
TGCTTTTGGAGCTTCAAGCACCC
Found at i:52321 original size:14 final size:14
Alignment explanation
Indices: 52290--52329 Score: 55
Period size: 14 Copynumber: 2.8 Consensus size: 14
52280 AATTTATTGG
52290 TATATATATATATAA
1 TATA-ATATATATAA
52305 TATAATATA-ATACA
1 TATAATATATATA-A
52319 TATAATATATA
1 TATAATATATA
52330 CGCATACCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 3 0.13
14 15 0.65
15 5 0.22
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (14 bp):
TATAATATATATAA
Found at i:52454 original size:17 final size:16
Alignment explanation
Indices: 52396--52457 Score: 67
Period size: 17 Copynumber: 3.9 Consensus size: 16
52386 TTTAAGAAGA
52396 ATAT-TATAT-TATATT
1 ATATGTATATATATA-T
*
52411 ATAT-TATATATAGAT
1 ATATGTATATATATAT
52426 ATATGTTATATATATAT
1 ATATG-TATATATATAT
52443 ATATGTAGTATATAT
1 ATATGTA-TATATAT
52458 CATACTAGAC
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
15 14 0.34
16 5 0.12
17 22 0.54
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (16 bp):
ATATGTATATATATAT
Found at i:52475 original size:2 final size:2
Alignment explanation
Indices: 52396--52457 Score: 53
Period size: 2 Copynumber: 33.0 Consensus size: 2
52386 TTTAAGAAGA
* *
52396 AT AT -T AT AT -T AT AT -T AT AT -T AT AT AT AG AT AT AT GT -T
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
52433 AT AT AT AT AT AT AT GT AGT AT AT AT
1 AT AT AT AT AT AT AT AT A-T AT AT AT
52458 CATACTAGAC
Statistics
Matches: 49, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
1 5 0.10
2 42 0.86
3 2 0.04
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (2 bp):
AT
Found at i:53702 original size:49 final size:49
Alignment explanation
Indices: 53630--53730 Score: 202
Period size: 49 Copynumber: 2.1 Consensus size: 49
53620 GCCTTGATTA
53630 TATCTGTAGAAGGCTTGCTGCTTTGGATTCCTTGAAAAAGGAACATTTT
1 TATCTGTAGAAGGCTTGCTGCTTTGGATTCCTTGAAAAAGGAACATTTT
53679 TATCTGTAGAAGGCTTGCTGCTTTGGATTCCTTGAAAAAGGAACATTTT
1 TATCTGTAGAAGGCTTGCTGCTTTGGATTCCTTGAAAAAGGAACATTTT
53728 TAT
1 TAT
53731 GCCAAAAAAG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 52 1.00
ACGTcount: A:0.27, C:0.14, G:0.22, T:0.38
Consensus pattern (49 bp):
TATCTGTAGAAGGCTTGCTGCTTTGGATTCCTTGAAAAAGGAACATTTT
Found at i:54983 original size:39 final size:39
Alignment explanation
Indices: 54940--55017 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
54930 CTTGTATTAG
54940 GTATTCCGGAGTCTCATAAATTGAGTCATTATCTTTCAC
1 GTATTCCGGAGTCTCATAAATTGAGTCATTATCTTTCAC
54979 GTATTCCGGAGTCTCATAAATTGAGTCATTATCTTTCAC
1 GTATTCCGGAGTCTCATAAATTGAGTCATTATCTTTCAC
55018 CCGAAAATCG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (39 bp):
GTATTCCGGAGTCTCATAAATTGAGTCATTATCTTTCAC
Found at i:64172 original size:13 final size:13
Alignment explanation
Indices: 64154--64180 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
64144 AAACGGAAAA
64154 TCCAGAAGTGCTT
1 TCCAGAAGTGCTT
64167 TCCAGAAGTGCTT
1 TCCAGAAGTGCTT
64180 T
1 T
64181 TTAGTTGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.33
Consensus pattern (13 bp):
TCCAGAAGTGCTT
Found at i:67651 original size:29 final size:28
Alignment explanation
Indices: 67612--67667 Score: 94
Period size: 29 Copynumber: 2.0 Consensus size: 28
67602 GTTATTCCAC
*
67612 GTTCTTTAGCGTTCTTGAAGATTAGAAAT
1 GTTCTTGAGCGTTCTTGAA-ATTAGAAAT
67641 GTTCTTGAGCGTTCTTGAAATTAGAAA
1 GTTCTTGAGCGTTCTTGAAATTAGAAA
67668 GTTTGAAGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 8 0.31
29 18 0.69
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (28 bp):
GTTCTTGAGCGTTCTTGAAATTAGAAAT
Found at i:85285 original size:16 final size:17
Alignment explanation
Indices: 85256--85297 Score: 61
Period size: 16 Copynumber: 2.5 Consensus size: 17
85246 AAGGGAGCAG
85256 TTATTTTATTTTATTTT
1 TTATTTTATTTTATTTT
85273 TTATTTT-TTTTATTTAT
1 TTATTTTATTTTATTT-T
85290 TT-TTTTAT
1 TTATTTTAT
85298 GGGTGTATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 12 0.52
17 11 0.48
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (17 bp):
TTATTTTATTTTATTTT
Found at i:85288 original size:13 final size:12
Alignment explanation
Indices: 85259--85295 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
85249 GGAGCAGTTA
*
85259 TTTTATTTTATT
1 TTTTATTTTTTT
85271 TTTTATTTTTTT
1 TTTTATTTTTTT
85283 TATTTATTTTTTT
1 T-TTTATTTTTTT
85296 ATGGGTGTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 12 0.52
13 11 0.48
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (12 bp):
TTTTATTTTTTT
Found at i:88636 original size:29 final size:29
Alignment explanation
Indices: 88603--88691 Score: 169
Period size: 29 Copynumber: 3.1 Consensus size: 29
88593 CTGTAAATGC
*
88603 TGGTCTTTACTCTTCCATGTGTCTTGACT
1 TGGTCTTTACTCTTCCATGTGTATTGACT
88632 TGGTCTTTACTCTTCCATGTGTATTGACT
1 TGGTCTTTACTCTTCCATGTGTATTGACT
88661 TGGTCTTTACTCTTCCATGTGTATTGACT
1 TGGTCTTTACTCTTCCATGTGTATTGACT
88690 TG
1 TG
88692 ACAAATAGCC
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 59 1.00
ACGTcount: A:0.12, C:0.21, G:0.18, T:0.48
Consensus pattern (29 bp):
TGGTCTTTACTCTTCCATGTGTATTGACT
Found at i:97528 original size:332 final size:328
Alignment explanation
Indices: 96775--97807 Score: 1283
Period size: 332 Copynumber: 3.2 Consensus size: 328
96765 ATTTTTAAGT
* * * *
96775 CACAATACTCATAAAAAATATATAATTCAACGCTAAAAAGATTGAAAGACTTTTCACGCTTCTAA
1 CACAATACTCATAAAAAATATAAAATTCAACGCCAAAAAGATTGAAAGGCTTTTCACACTTCTAA
* * * * *
96840 TATCATTTGCCTCATTTTTTTCGGA--AA--T-TAA-T---TCGAAACAAGATTCTGATACTCGT
66 TATCATTTTCCT-ATTTTTTTCGAATTAATTTCTAATTAAATCGAAATAAGATTCTGATGCTCAT
* * * * *
96896 AAAAACAAATCCTT-ATATCCAATGTGACTAAGATTTGATGAGATGAATACAGAAAGTTCAACGA
130 AAAAACAAATCCTTAAT-TCTAATGTG-CTGAGATTTGGTGAGATGAATACAGATATTTCAACGA
* * *
96960 GTTTTGGTGCCAAAAATCATGCAAAACTGAGTCGGGATCCGGAATGCGTTTTTAGCCAAAAACTG
193 GTCTTGGTGCCAAAAATCATGCAAAACTGAGTCGGGACCCGGAACGCGTTTTTAGCCAAAAACTG
* * *
97025 TGATGGTTAGCATACGATTTCGGCTAAAATTTTGCAAAAATTGAATCGAAA-ATTTTCCCTCAAT
258 TGATGGTTAG-ACACGATTTCGGCTAAAATTTTGCAAAAATTAAATCGAAAGATTTTTCCTCAAT
97089 TTTTGG-
322 TTTTGGC
* * * *
97095 CATAATTCTCATAAAAAATATATAAATTCAATGCCAATAAGATTGAAAGGCTTTTCACACTTCTA
1 CACAATACTCATAAAAAATATA-AAATTCAACGCCAAAAAGATTGAAAGGCTTTTCACACTTCTA
* * *
97160 ATATCTTTTTTCCTATTTTTTCCGATTTAATTTCTAATTAAATCGAAATAAGATTCTGATGCTCA
65 ATATC-ATTTTCCTATTTTTTTCGAATTAATTTCTAATTAAATCGAAATAAGATTCTGATGCTCA
* ** *
97225 TAAAAACAAATCCTTAATTGTAATGTAGCTGAGATTTGGTTTGATGAATACAGATATTTCAACAA
129 TAAAAACAAATCCTTAATTCTAATGT-GCTGAGATTTGGTGAGATGAATACAGATATTTCAACGA
* *
97290 GTCTTGGCGCCAAAAATCAAGCAAAACTGAGTCGGGACCTCGGAACGCGTTTTTAGCCAAAAACT
193 GTCTTGGTGCCAAAAATCATGCAAAACTGAGTCGGGACC-CGGAACGCGTTTTTAGCCAAAAACT
* * *
97355 GTGATGGTTAGTACACGACTTCGGCTAAAATTTTACAAAAATTAAATCGAAAGGTTTTTCCTCAA
257 GTGATGGTTAG-ACACGATTTCGGCTAAAATTTTGCAAAAATTAAATCGAAAGATTTTTCCTCAA
97420 TTTTTGGC
321 TTTTTGGC
* * *
97428 CACAAAACTCATAAAAAATATAAAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACTCTTCTAA
1 CACAATACTCATAAAAAATATAAAATTCAACGCCAAAAAGATTGAAAGGCTTTTCACACTTCTAA
97493 TATCATTTATCCTATTTTTTTCGAATTAATTTCTAATTAAATCGAAATAAGATTCTGATGCTCAT
66 TATCATTT-TCCTATTTTTTTCGAATTAATTTCTAATTAAATCGAAATAAGATTCTGATGCTCAT
* *
97558 AAAAACAAATTCTTAAATCTAATGTGGCTGAGATTTGGTGAGATGAATACAGATATTTCAACGAG
130 AAAAACAAATCCTTAATTCTAATGT-GCTGAGATTTGGTGAGATGAATACAGATATTTCAACGAG
* * * * *
97623 TCTTGGTGGCAAAAATCATGCAAAATTGAGTCGGAATCCCGAAACGCGGTTTTAGCC---AA---
194 TCTTGGTGCCAAAAATCATGCAAAACTGAGTCGGGA-CCCGGAACGCGTTTTTAGCCAAAAACTG
* **
97682 --A-----A-ACACGATTTCGGCTAAAATTTTGCAAATATTTGATCGAAAGATTTTTTCCTC-AT
258 TGATGGTTAGACACGATTTCGGCTAAAATTTTGCAAAAATTAAATCGAAAGA-TTTTTCCTCAAT
97738 TTTTGGC
322 TTTTGGC
* * * *
97745 CACAATACTCATAAAAAATATATAATTCAACGACAAAAAGATTGAAGGGCTTTTCAGACTTCT
1 CACAATACTCATAAAAAATATAAAATTCAACGCCAAAAAGATTGAAAGGCTTTTCACACTTCT
Statistics
Matches: 622, Mismatches: 72, Indels: 41
0.85 0.10 0.06
Matches are distributed among these distances:
317 103 0.17
318 9 0.01
319 1 0.00
320 20 0.03
321 50 0.08
322 6 0.01
323 2 0.00
324 1 0.00
325 1 0.00
326 3 0.00
327 1 0.00
329 2 0.00
330 106 0.17
331 77 0.12
332 219 0.35
333 21 0.03
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.32
Consensus pattern (328 bp):
CACAATACTCATAAAAAATATAAAATTCAACGCCAAAAAGATTGAAAGGCTTTTCACACTTCTAA
TATCATTTTCCTATTTTTTTCGAATTAATTTCTAATTAAATCGAAATAAGATTCTGATGCTCATA
AAAACAAATCCTTAATTCTAATGTGCTGAGATTTGGTGAGATGAATACAGATATTTCAACGAGTC
TTGGTGCCAAAAATCATGCAAAACTGAGTCGGGACCCGGAACGCGTTTTTAGCCAAAAACTGTGA
TGGTTAGACACGATTTCGGCTAAAATTTTGCAAAAATTAAATCGAAAGATTTTTCCTCAATTTTT
GGC
Done.