Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014591.1 Corchorus olitorius cultivar O-4 contig14624, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69666

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5158--5216
31
1.9
31
89
3
93
54
6
11
27
1.62
5183--5228
23
1.9
25
91
8
78
52
4
10
32
1.56
5794--6054
86
3.0
86
97
0
495
13
26
28
31
1.94
6428--6703
84
3.3
83
80
7
272
18
27
26
27
1.98
6419--6709
28
10.5
28
79
2
228
18
27
26
27
1.98
6428--6709
83
3.4
83
79
8
286
18
27
26
27
1.98
6767--6830
28
2.3
28
80
0
74
29
28
18
23
1.98
7841--7954
59
1.9
59
100
0
228
13
26
34
26
1.93
8240--8287
21
2.4
19
78
21
53
20
20
31
27
1.98
11584--11618
8
4.4
8
96
0
52
31
0
17
51
1.45
11588--11620
4
8.2
4
93
0
57
27
0
21
51
1.48
11583--11618
12
3.0
12
91
0
54
33
0
16
50
1.46
17111--17165
21
2.8
19
72
20
58
36
9
20
34
1.84
22992--23041
9
4.8
10
75
24
50
2
50
0
48
1.12
25335--25400
32
2.1
32
86
5
91
51
7
4
36
1.51
28877--28907
14
2.2
14
100
0
62
45
22
6
25
1.76
29903--29951
25
2.0
25
95
0
89
53
0
38
8
1.31
33139--33186
19
2.6
19
78
15
55
45
0
2
52
1.12
34538--34639
51
2.0
50
80
12
111
21
19
13
45
1.85
35769--35795
10
2.7
10
100
0
54
11
0
59
29
1.32
36117--36168
18
2.9
18
85
0
77
11
25
26
36
1.90
36697--36832
59
2.3
59
92
0
227
14
24
36
25
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41692--41718
12
2.2
12
100
0
54
77
14
0
7
0.97
45910--46378
22
21.4
21
69
16
219
35
17
9
37
1.82
46014--46613
66
9.3
62
69
16
203
34
16
10
38
1.84
45952--46315
128
2.8
127
77
11
317
35
17
9
37
1.82
46395--46699
66
4.6
66
79
8
291
34
16
10
37
1.84
46552--46657
42
2.5
43
85
3
142
33
16
11
37
1.85
46395--46703
22
14.0
22
75
12
226
34
17
10
37
1.84
49745--49921
22
8.0
22
89
2
239
12
26
5
55
1.59
49954--51218
47
26.9
47
94
0
2030
28
19
6
44
1.76
51180--51391
54
3.9
54
78
9
173
28
18
6
45
1.75
51246--51391
56
2.7
54
84
6
170
30
18
6
44
1.76
55303--55329
2
13.5
2
100
0
54
51
0
0
48
1.00
55453--55709
58
4.4
58
86
3
338
31
33
19
15
1.93
56542--56833
28
10.7
28
73
9
199
28
25
29
17
1.97
58859--58884
12
2.2
12
100
0
52
53
15
0
30
1.42
59082--59325
122
2.0
122
100
0
488
31
12
22
34
1.91
61776--61967
96
2.0
96
94
0
339
29
16
18
35
1.93
63151--63195
11
4.1
11
100
0
90
62
8
11
17
1.53
63194--63231
12
3.3
12
89
7
53
15
34
34
15
1.90
68557--68677
55
2.2
55
87
0
170
27
23
17
31
1.97
68577--68698
55
2.2
55
92
0
199
20
22
21
36
1.96

Tables:   1

The End!