Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014592.1 Corchorus olitorius cultivar O-4 contig14625, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42265

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
622--667
5
10.0
5
97
2
64
86
13
0
0
0.56
1342--1451
55
2.0
55
98
0
211
30
21
12
35
1.91
1408--1528
23
5.3
23
62
21
67
32
25
7
34
1.84
1397--1721
45
7.4
45
87
7
463
30
24
9
35
1.88
1454--1527
22
3.3
22
67
10
69
33
27
6
32
1.83
1582--1652
35
2.0
35
91
0
115
30
25
9
33
1.88
1537--1690
80
1.9
81
94
1
274
30
24
10
34
1.89
1617--1723
46
2.3
46
90
1
162
28
23
9
38
1.86
4807--4860
21
2.6
21
82
5
56
16
27
31
24
1.96
8006--8306
157
1.9
157
97
0
575
22
25
25
26
2.00
13353--13382
16
1.9
16
93
6
53
20
10
10
60
1.57
13585--13619
5
6.8
5
93
6
61
20
0
2
77
0.90
13585--13621
16
2.4
16
95
4
67
18
0
5
75
0.99
20642--20685
18
2.4
17
82
17
52
54
2
4
38
1.33
21411--21457
23
2.1
23
84
7
62
57
21
8
12
1.62
29968--29993
2
13.0
2
100
0
52
50
0
0
50
1.00
30744--30821
2
38.5
2
79
16
81
44
0
5
50
1.24
30752--30831
41
2.0
41
95
5
144
41
0
6
52
1.27
35802--35968
80
2.1
80
98
1
325
31
29
23
14
1.95
38804--38885
41
2.0
41
95
0
146
35
18
15
30
1.92

Tables:   1

The End!