Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014593.1 Corchorus olitorius cultivar O-4 contig14626, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70847

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1841--1867
4
6.8
4
100
0
54
77
0
22
0
0.76
1905--1970
13
4.9
13
84
15
82
43
9
10
36
1.71
2608--2653
11
4.0
11
78
10
56
82
2
15
0
0.76
2608--2650
12
3.7
12
84
3
61
81
2
16
0
0.79
2778--2944
87
1.9
87
91
0
271
36
10
23
28
1.89
3721--4179
37
12.4
37
79
5
444
23
15
16
44
1.86
4125--4273
62
2.4
62
94
0
253
25
19
11
43
1.84
4165--4221
25
2.3
25
79
8
64
22
21
10
45
1.82
4348--4595
54
4.6
54
79
9
256
27
16
22
33
1.95
4532--4647
55
2.1
55
81
9
130
29
19
22
28
1.98
4658--4735
33
2.4
33
91
0
120
43
17
6
32
1.75
4871--4915
7
6.4
7
89
0
63
55
17
0
26
1.42
4871--5103
21
11.0
21
81
5
121
52
16
7
23
1.69
4874--5100
14
16.2
14
82
6
66
52
16
7
22
1.69
4963--5101
7
19.9
7
99
0
242
57
14
10
17
1.65
10605--10656
24
2.1
25
89
3
79
34
0
3
61
1.14
15726--15822
32
3.0
32
83
3
124
34
37
19
9
1.84
15728--15851
32
3.9
32
80
6
110
36
34
19
9
1.85
15726--15849
16
7.8
16
71
13
94
35
35
19
9
1.85
16380--16461
42
2.0
42
97
0
155
39
18
4
37
1.72
16988--17063
16
4.8
16
88
3
100
28
38
25
7
1.84
16988--17068
7
10.6
7
75
20
65
29
39
23
7
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17010--17058
9
5.9
9
81
18
61
30
36
24
8
1.85
16988--17063
32
2.4
32
91
4
118
28
38
25
7
1.84
17003--17065
16
3.9
16
93
0
108
31
38
23
6
1.80
17036--17087
22
2.3
22
86
3
68
38
36
17
7
1.78
28611--28640
2
15.5
2
93
6
53
50
0
0
50
1.00
28835--28951
31
3.9
30
85
4
121
17
19
25
36
1.94
28873--28987
31
3.7
31
91
0
167
15
19
27
37
1.92
28862--28997
31
4.4
31
89
0
164
17
21
26
34
1.95
31528--31564
1
37.0
1
100
0
74
100
0
0
0
0.00
32879--32916
11
3.5
11
89
10
51
39
0
2
57
1.12
33079--33119
2
20.5
2
94
0
73
48
0
0
51
1.00
33087--33144
20
2.9
20
85
10
66
48
1
0
50
1.11
34914--34942
14
2.0
15
93
6
51
68
6
3
20
1.27
39395--39439
24
2.0
24
82
8
58
40
8
6
44
1.62
44080--44121
22
2.0
21
86
13
61
45
7
14
33
1.72
45787--45832
22
2.1
22
88
8
67
32
15
17
34
1.91
45986--46061
29
2.5
30
80
6
91
34
25
10
30
1.89
47653--47814
67
2.5
65
84
8
229
38
9
10
41
1.72
47743--47909
90
1.8
91
88
1
255
37
6
10
45
1.64
48450--48594
71
2.1
71
92
1
238
48
10
12
28
1.74
53578--53607
2
15.0
2
100
0
60
50
0
0
50
1.00
55569--55609
21
1.9
22
85
5
57
43
29
17
9
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57349--57375
1
27.0
1
100
0
54
0
0
0
100
0.00
57405--57484
38
2.1
38
100
0
160
60
12
13
13
1.60
61004--61078
29
2.5
30
80
6
89
30
25
12
32
1.92

Tables:   1

The End!