Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014595.1 Corchorus olitorius cultivar O-4 contig14628, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9071
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36


Found at i:3911 original size:30 final size:30

Alignment explanation


    Indices: 3875--3937  Score: 126
    Period size: 30  Copynumber: 2.1  Consensus size: 30

       3865 ACATGTAATT

                                          
       3875 CAGTAGTACCTTAGAGCTTAATTTTCTTGC
          1 CAGTAGTACCTTAGAGCTTAATTTTCTTGC

                                          
       3905 CAGTAGTACCTTAGAGCTTAATTTTCTTGC
          1 CAGTAGTACCTTAGAGCTTAATTTTCTTGC

               
       3935 CAG
          1 CAG

       3938 CAATCATAAA


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   33  1.00

ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38


Consensus pattern (30 bp):   
CAGTAGTACCTTAGAGCTTAATTTTCTTGC
Done.